Strain Fitness in Sphingobium sp. HT1-2 around GFF1992

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,012,435	-		GFF1990	0.50	+0.4
2,012,436	-		GFF1990	0.50	-0.3
2,012,466	+		GFF1990	0.52	-1.2
2,012,466	+		GFF1990	0.52	-0.6
2,012,474	-		GFF1990	0.52	+0.2
2,012,491	-		GFF1990	0.54	-0.7
2,012,495	+		GFF1990	0.54	+0.4
2,012,508	-		GFF1990	0.55	+0.7
2,012,538	+		GFF1990	0.57	-1.2
2,012,538	+		GFF1990	0.57	-1.0
2,012,546	-		GFF1990	0.58	+0.5
2,012,546	-		GFF1990	0.58	-1.9
2,012,546	-		GFF1990	0.58	+0.2
2,012,562	-		GFF1990	0.59	+0.2
2,012,562	-		GFF1990	0.59	+0.7
2,012,581	+		GFF1990	0.60	-0.7
2,012,600	+		GFF1990	0.61	+0.2
2,012,636	-		GFF1990	0.64	+0.5
2,012,651	-		GFF1990	0.65	+0.1
2,012,678	-		GFF1990	0.67	-1.0
2,012,694	+		GFF1990	0.68	-0.5
2,012,694	+		GFF1990	0.68	+0.2
2,012,702	-		GFF1990	0.68	-0.7
2,012,702	-		GFF1990	0.68	+0.1
2,012,741	+		GFF1990	0.71	-0.8
2,012,741	+		GFF1990	0.71	+0.2
2,012,741	+		GFF1990	0.71	+1.7
2,012,741	+		GFF1990	0.71	+0.6
2,012,744	-		GFF1990	0.71	-1.3
2,012,749	-		GFF1990	0.72	-0.9
2,012,832	+		GFF1990	0.78	-0.0
2,012,835	-		GFF1990	0.78	-1.4
2,012,840	-		GFF1990	0.78	-1.4
2,012,840	-		GFF1990	0.78	-0.1
2,012,840	-		GFF1990	0.78	-1.7
2,012,848	+		GFF1990	0.79	+0.2
2,012,862	+		GFF1990	0.80	+0.2
2,012,862	+		GFF1990	0.80	+0.1
2,012,868	+		GFF1990	0.80	-0.7
2,012,876	-		GFF1990	0.81	-2.2
2,012,877	-		GFF1990	0.81	+0.3
2,012,916	+		GFF1990	0.84	+0.8
2,012,970	+		GFF1990	0.87	-0.8
2,012,974	-		GFF1990	0.88	-0.1
2,012,975	-		GFF1990	0.88	-0.1
2,012,982	+		GFF1990	0.88	-0.8
2,012,983	-		GFF1990	0.88	+0.2
2,012,984	-		GFF1990	0.88	-0.6
2,012,991	-		GFF1990	0.89	-0.9
2,012,992	+		GFF1990	0.89	+0.1
2,013,013	+				-1.2
2,013,033	-				-1.8
2,013,056	-				-1.4
2,013,081	+				-0.4
2,013,081	+				-1.5
2,013,089	-				+0.3
2,013,111	-				+1.2
2,013,111	-				-0.8
2,013,116	-				-1.4
2,013,116	-				+2.0
2,013,121	-				-0.7
2,013,122	+				+0.6
2,013,131	-				-1.5
2,013,131	-				+0.3
2,013,150	+				+0.6
2,013,160	+				-0.9
2,013,168	-				+0.1
2,013,168	-				-2.5
2,013,170	+				-0.2
2,013,173	-				-0.3
2,013,177	+				-1.4
2,013,185	+		GFF1991	0.13	+0.1
2,013,196	+		GFF1991	0.16	-1.9
2,013,196	+		GFF1991	0.16	+0.0
2,013,204	-		GFF1991	0.19	-1.2
2,013,212	+		GFF1991	0.22	-0.6
2,013,221	-		GFF1991	0.25	+0.2
2,013,221	-		GFF1991	0.25	+1.1
2,013,234	+		GFF1991	0.30	-0.5
2,013,243	+		GFF1991	0.33	-0.5
2,013,251	-		GFF1991	0.36	-0.7
2,013,265	+		GFF1991	0.41	+0.3
2,013,267	+		GFF1991	0.41	-1.9
2,013,274	-		GFF1991	0.44	-0.7
2,013,277	+		GFF1991	0.45	+0.2
2,013,285	-		GFF1991	0.48	-0.5
2,013,285	-		GFF1991	0.48	+0.3
2,013,285	-		GFF1991	0.48	+0.4
2,013,343	-		GFF1991	0.68	+1.0
2,013,347	+		GFF1991	0.69	+1.4
2,013,347	+		GFF1991	0.69	-1.5
2,013,352	+		GFF1991	0.71	-0.4
2,013,355	-		GFF1991	0.72	-0.7
2,013,360	-		GFF1991	0.74	-1.8
2,013,366	+		GFF1991	0.76	+1.5
2,013,366	+		GFF1991	0.76	-0.0
2,013,366	+		GFF1991	0.76	-1.4
2,013,371	+		GFF1991	0.78	+1.5
2,013,379	-		GFF1991	0.81	+0.5
2,013,381	-		GFF1991	0.81	+1.3
2,013,390	+		GFF1991	0.85	-1.7
2,013,398	-		GFF1991	0.87	+0.1
2,013,443	+				-0.5
2,013,450	+				-1.2
2,013,460	+				+0.6
2,013,465	+				+0.8
2,013,465	+				-1.1
2,013,465	+				+0.3
2,013,468	-				+1.7
2,013,468	-				-2.0
2,013,468	-				+0.0
2,013,468	-				-1.7
2,013,468	-				+0.5
2,013,468	-				+0.4
2,013,473	-		GFF1992	0.11	-2.8
2,013,473	-		GFF1992	0.11	+1.1
2,013,484	+		GFF1992	0.14	-0.5
2,013,484	+		GFF1992	0.14	-0.5
2,013,489	+		GFF1992	0.15	-0.7
2,013,492	-		GFF1992	0.16	+0.1
2,013,566	+		GFF1992	0.37	-1.5
2,013,566	+		GFF1992	0.37	-1.9
2,013,566	+		GFF1992	0.37	-0.7
2,013,566	+		GFF1992	0.37	-1.6
2,013,566	+		GFF1992	0.37	-1.4
2,013,566	+		GFF1992	0.37	-1.2
2,013,566	+		GFF1992	0.37	+0.4
2,013,566	+		GFF1992	0.37	-1.1
2,013,571	+		GFF1992	0.38	-0.6
2,013,574	-		GFF1992	0.39	-2.0
2,013,574	-		GFF1992	0.39	+0.5
2,013,574	-		GFF1992	0.39	-1.4
2,013,574	-		GFF1992	0.39	-1.2
2,013,574	-		GFF1992	0.39	+0.4
2,013,574	-		GFF1992	0.39	-1.2
2,013,574	-		GFF1992	0.39	-1.5
2,013,574	-		GFF1992	0.39	+0.3
2,013,598	-		GFF1992	0.46	+0.9
2,013,654	-		GFF1992	0.61	+0.0
2,013,656	+		GFF1992	0.62	+0.4
2,013,660	-		GFF1992	0.63	+1.3
2,013,667	+		GFF1992	0.65	-0.2
2,013,675	-		GFF1992	0.67	-1.4
2,013,677	-		GFF1992	0.68	-2.3
2,013,694	-		GFF1992	0.73	-1.4
2,013,694	-		GFF1992	0.73	-0.8
2,013,701	+		GFF1992	0.75	-1.7
2,013,709	-		GFF1992	0.77	+0.5
2,013,709	-		GFF1992	0.77	-0.3
2,013,709	-		GFF1992	0.77	-0.3
2,013,723	+		GFF1992	0.81	-1.1
2,013,731	-		GFF1992	0.83	-0.8
2,013,731	-		GFF1992	0.83	-0.8
2,013,731	-		GFF1992	0.83	-0.6
2,013,731	-		GFF1992	0.83	+0.3
2,013,761	+				-0.7
2,013,761	+				-1.5
2,013,761	+				-0.9
2,013,761	+				-2.0
2,013,761	+				-0.8
2,013,766	+				-0.2
2,013,769	+				+0.4
2,013,769	+				+0.4
2,013,769	+				+0.6
2,013,769	-				-1.4
2,013,769	-				+0.9
2,013,777	-				-0.2
2,013,777	-				+0.1
2,013,777	-				+1.2
2,013,779	-				+0.0
2,013,790	+				-0.3
2,013,796	-				+0.4
2,013,815	-				+0.6
2,013,821	+				+0.4
2,013,829	-				-1.7
2,013,847	+				-1.9
2,013,847	+				+1.1
2,013,855	-				+0.9
2,013,855	-				+0.4
2,013,855	-				-1.7
2,013,855	-				-1.1
2,013,855	-				+1.4
2,013,855	-				-0.2
2,013,855	-				-1.2
2,013,865	-				-0.5
2,013,865	-				-0.9
2,013,865	-				-0.7
2,013,866	+				-1.9
2,013,873	-				-0.2
2,013,874	-				-0.7
2,013,878	-				+0.3
2,013,884	-				-2.2
2,013,891	+				+0.9
2,013,910	+				+0.3
2,013,958	+				-2.8
2,013,958	+				+1.2
2,013,966	-				-0.9
2,013,971	+				+1.4
2,013,971	+				+0.7
2,013,974	-				-1.7
2,013,989	-				-0.3
2,014,002	+				-0.6
2,014,007	+				-0.9
2,014,050	+		GFF1993	0.11	+0.5
2,014,063	+		GFF1993	0.12	+0.0
2,014,068	+		GFF1993	0.12	-0.5
2,014,073	+		GFF1993	0.13	-0.8
2,014,073	+		GFF1993	0.13	-2.6
2,014,073	+		GFF1993	0.13	-1.5
2,014,073	+		GFF1993	0.13	-0.4
2,014,073	+		GFF1993	0.13	-0.6
2,014,081	-		GFF1993	0.13	-0.7
2,014,081	-		GFF1993	0.13	+1.0
2,014,081	-		GFF1993	0.13	-1.3
2,014,081	-		GFF1993	0.13	+0.4
2,014,087	+		GFF1993	0.14	-1.1
2,014,098	+		GFF1993	0.15	-0.3
2,014,106	-		GFF1993	0.16	-0.4
2,014,116	+		GFF1993	0.17	+1.5
2,014,124	-		GFF1993	0.17	+0.6
2,014,131	-		GFF1993	0.18	-1.9
2,014,159	+		GFF1993	0.20	+0.3
2,014,167	+		GFF1993	0.21	-0.2
2,014,174	+		GFF1993	0.22	+1.2
2,014,174	+		GFF1993	0.22	+0.4
2,014,174	+		GFF1993	0.22	-1.4
2,014,174	+		GFF1993	0.22	-0.4
2,014,174	+		GFF1993	0.22	+1.3
2,014,182	-		GFF1993	0.22	+0.6
2,014,182	-		GFF1993	0.22	+0.7
2,014,182	-		GFF1993	0.22	+0.3
2,014,192	-		GFF1993	0.23	+1.2
2,014,220	-		GFF1993	0.26	+0.9
2,014,233	-		GFF1993	0.27	+0.6
2,014,240	+		GFF1993	0.28	-1.3
2,014,248	-		GFF1993	0.28	+0.1
2,014,248	-		GFF1993	0.28	+1.2
2,014,272	+		GFF1993	0.30	+1.4
2,014,272	+		GFF1993	0.30	+1.0
2,014,272	+		GFF1993	0.30	-0.2
2,014,277	+		GFF1993	0.31	-0.4
2,014,280	-		GFF1993	0.31	-0.4
2,014,280	-		GFF1993	0.31	-1.4
2,014,280	-		GFF1993	0.31	+0.2
2,014,296	+		GFF1993	0.33	-0.2
2,014,309	-		GFF1993	0.34	-1.1
2,014,318	-		GFF1993	0.34	+0.2
2,014,333	-		GFF1993	0.36	+1.5
2,014,333	-		GFF1993	0.36	+0.3
2,014,337	-		GFF1993	0.36	+1.7
2,014,373	-		GFF1993	0.39	-0.1
2,014,380	+		GFF1993	0.40	+0.3
2,014,414	+		GFF1993	0.43	-2.1
2,014,421	+		GFF1993	0.44	-1.0
2,014,424	-		GFF1993	0.44	+0.3
2,014,452	+		GFF1993	0.46	+0.7
2,014,453	-		GFF1993	0.46	-0.6
2,014,474	-		GFF1993	0.48	-3.5
2,014,482	-		GFF1993	0.49	-0.8
2,014,482	-		GFF1993	0.49	+0.8
2,014,487	+		GFF1993	0.50	-0.4
2,014,487	-		GFF1993	0.50	-1.2
2,014,497	-		GFF1993	0.50	+0.2
2,014,497	-		GFF1993	0.50	-1.0
2,014,514	+		GFF1993	0.52	+0.1
2,014,514	+		GFF1993	0.52	+0.3
2,014,522	-		GFF1993	0.53	-0.4
2,014,532	-		GFF1993	0.54	-2.4
2,014,556	-		GFF1993	0.56	+0.5
2,014,630	+		GFF1993	0.62	-3.8
2,014,630	+		GFF1993	0.62	+0.7
2,014,633	-		GFF1993	0.62	-2.0
2,014,633	-		GFF1993	0.62	+0.2
2,014,638	-		GFF1993	0.63	-0.8
2,014,638	-		GFF1993	0.63	+0.6
2,014,638	-		GFF1993	0.63	-0.1
2,014,646	+		GFF1993	0.64	+0.6
2,014,646	+		GFF1993	0.64	+0.4
2,014,768	+		GFF1993	0.74	+1.3
2,014,768	+		GFF1993	0.74	-2.1
2,014,768	+		GFF1993	0.74	+1.0
2,014,770	+		GFF1993	0.75	+0.3
2,014,776	-		GFF1993	0.75	-0.2
2,014,776	-		GFF1993	0.75	-0.2
2,014,776	-		GFF1993	0.75	-1.7
2,014,777	-		GFF1993	0.75	-0.7
2,014,786	+		GFF1993	0.76	+0.1
2,014,786	+		GFF1993	0.76	-0.3
2,014,786	+		GFF1993	0.76	-0.4