Strain Fitness in Sphingobium sp. HT1-2 around GFF1910

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,931,559	+		GFF1908	0.44	-1.3
1,931,577	-		GFF1908	0.46	-1.2
1,931,654	+		GFF1908	0.54	-0.1
1,931,654	+		GFF1908	0.54	-0.4
1,931,654	+		GFF1908	0.54	-0.4
1,931,654	+		GFF1908	0.54	-0.3
1,931,654	+		GFF1908	0.54	-1.1
1,931,654	+		GFF1908	0.54	-0.3
1,931,654	+		GFF1908	0.54	-0.5
1,931,654	+		GFF1908	0.54	-1.7
1,931,654	+		GFF1908	0.54	-0.3
1,931,654	+		GFF1908	0.54	+0.6
1,931,654	+		GFF1908	0.54	-0.2
1,931,655	+		GFF1908	0.54	+0.4
1,931,655	+		GFF1908	0.54	-1.5
1,931,655	+		GFF1908	0.54	+1.0
1,931,655	+		GFF1908	0.54	+1.6
1,931,655	+		GFF1908	0.54	-0.5
1,931,656	+		GFF1908	0.54	-0.0
1,931,662	-		GFF1908	0.54	-0.9
1,931,662	-		GFF1908	0.54	-1.0
1,931,662	-		GFF1908	0.54	+0.5
1,931,662	-		GFF1908	0.54	-0.8
1,931,662	-		GFF1908	0.54	+0.5
1,931,662	-		GFF1908	0.54	-0.6
1,931,662	-		GFF1908	0.54	+0.3
1,931,662	-		GFF1908	0.54	+1.1
1,931,662	-		GFF1908	0.54	-0.7
1,931,662	-		GFF1908	0.54	-1.9
1,931,662	-		GFF1908	0.54	-1.3
1,931,662	-		GFF1908	0.54	-1.6
1,931,662	-		GFF1908	0.54	-0.8
1,931,662	-		GFF1908	0.54	+0.9
1,931,662	-		GFF1908	0.54	-0.5
1,931,666	+		GFF1908	0.55	+0.8
1,931,667	-		GFF1908	0.55	-0.5
1,931,692	+		GFF1908	0.57	+0.8
1,931,698	+		GFF1908	0.58	+0.4
1,931,700	-		GFF1908	0.58	-1.9
1,931,700	-		GFF1908	0.58	+0.8
1,931,700	-		GFF1908	0.58	+1.1
1,931,700	-		GFF1908	0.58	-1.7
1,931,703	+		GFF1908	0.59	+0.3
1,931,703	+		GFF1908	0.59	+0.3
1,931,703	+		GFF1908	0.59	-0.6
1,931,705	-		GFF1908	0.59	+1.0
1,931,710	-		GFF1908	0.59	-0.1
1,931,711	-		GFF1908	0.59	-2.2
1,931,711	-		GFF1908	0.59	-1.3
1,931,711	-		GFF1908	0.59	-2.7
1,931,713	+		GFF1908	0.60	-0.2
1,931,722	-		GFF1908	0.61	-0.4
1,931,727	-		GFF1908	0.61	-0.2
1,931,732	-		GFF1908	0.62	-2.7
1,931,746	+		GFF1908	0.63	+1.2
1,931,768	+		GFF1908	0.65	-0.7
1,931,768	+		GFF1908	0.65	+1.7
1,931,769	+		GFF1908	0.65	+0.1
1,931,769	+		GFF1908	0.65	-0.2
1,931,770	+		GFF1908	0.65	-1.3
1,931,777	-		GFF1908	0.66	+1.1
1,931,784	+		GFF1908	0.67	-0.2
1,931,784	+		GFF1908	0.67	-1.8
1,931,800	+		GFF1908	0.69	+0.0
1,931,815	+		GFF1908	0.70	-0.1
1,931,815	+		GFF1908	0.70	-0.3
1,931,815	+		GFF1908	0.70	-0.1
1,931,815	+		GFF1908	0.70	+0.5
1,931,823	-		GFF1908	0.71	-1.0
1,931,824	+		GFF1908	0.71	+0.0
1,931,850	-		GFF1908	0.74	-0.3
1,931,859	+		GFF1908	0.75	+0.9
1,931,859	+		GFF1908	0.75	-0.2
1,931,860	-		GFF1908	0.75	-0.1
1,931,867	-		GFF1908	0.75	-1.7
1,931,867	-		GFF1908	0.75	-0.7
1,931,885	+		GFF1908	0.77	-1.2
1,931,885	+		GFF1908	0.77	+0.8
1,931,885	+		GFF1908	0.77	-1.8
1,931,893	-		GFF1908	0.78	+0.8
1,931,893	-		GFF1908	0.78	-0.9
1,931,893	-		GFF1908	0.78	-0.6
1,931,893	-		GFF1908	0.78	-0.4
1,931,893	-		GFF1908	0.78	-0.6
1,931,951	+		GFF1908	0.84	-0.2
1,931,951	+		GFF1908	0.84	-0.9
1,931,951	+		GFF1908	0.84	-0.3
1,931,956	+		GFF1908	0.85	+0.8
1,931,956	+		GFF1908	0.85	-1.8
1,931,956	+		GFF1908	0.85	+0.4
1,931,959	-		GFF1908	0.85	+0.1
1,931,964	-		GFF1908	0.85	+0.2
1,931,966	-		GFF1908	0.86	-0.6
1,931,966	-		GFF1908	0.86	-1.4
1,932,022	-				-0.1
1,932,023	-				+0.9
1,932,039	+				+0.3
1,932,044	+				-0.2
1,932,049	+				+0.5
1,932,052	-				-0.8
1,932,052	-				+1.4
1,932,052	-				-0.6
1,932,052	-				-0.3
1,932,052	-				+1.4
1,932,057	-				-1.2
1,932,059	+				+0.6
1,932,067	-				+0.1
1,932,067	-				-1.6
1,932,067	-				-0.2
1,932,067	-				-0.3
1,932,067	-				+0.1
1,932,069	+				-0.5
1,932,069	+				+0.0
1,932,070	+				-0.3
1,932,070	+				-1.3
1,932,077	-				+0.2
1,932,078	-				-1.2
1,932,078	-				+0.9
1,932,078	-				+0.4
1,932,078	-				+0.2
1,932,109	+				+1.8
1,932,109	+				-0.3
1,932,116	-				+0.3
1,932,117	-				-0.2
1,932,117	-				-0.8
1,932,117	-				+1.5
1,932,118	-				+0.4
1,932,119	+				-2.8
1,932,127	-				-1.3
1,932,129	-				-3.0
1,932,145	-		GFF1909	0.12	-1.1
1,932,255	-		GFF1909	0.51	-1.8
1,932,265	-		GFF1909	0.55	-1.8
1,932,278	+		GFF1909	0.59	-1.6
1,932,296	+		GFF1909	0.66	-1.3
1,932,300	+		GFF1909	0.67	-1.3
1,932,305	+		GFF1909	0.69	-2.6
1,932,305	+		GFF1909	0.69	-2.6
1,932,305	+		GFF1909	0.69	-1.2
1,932,305	+		GFF1909	0.69	-0.5
1,932,305	+		GFF1909	0.69	-2.7
1,932,305	+		GFF1909	0.69	-1.7
1,932,305	+		GFF1909	0.69	-3.6
1,932,305	+		GFF1909	0.69	-1.2
1,932,305	+		GFF1909	0.69	-1.4
1,932,305	+		GFF1909	0.69	-0.8
1,932,305	+		GFF1909	0.69	-1.7
1,932,305	+		GFF1909	0.69	-3.0
1,932,305	+		GFF1909	0.69	-0.5
1,932,305	+		GFF1909	0.69	-2.1
1,932,305	+		GFF1909	0.69	-1.8
1,932,305	+		GFF1909	0.69	-2.3
1,932,305	+		GFF1909	0.69	-2.6
1,932,305	+		GFF1909	0.69	-2.7
1,932,305	+		GFF1909	0.69	-1.0
1,932,305	+		GFF1909	0.69	-3.1
1,932,305	+		GFF1909	0.69	+0.1
1,932,313	-		GFF1909	0.72	-2.9
1,932,313	-		GFF1909	0.72	-1.6
1,932,313	-		GFF1909	0.72	-4.9
1,932,313	-		GFF1909	0.72	-1.2
1,932,313	-		GFF1909	0.72	-1.6
1,932,313	-		GFF1909	0.72	-2.8
1,932,313	-		GFF1909	0.72	-1.6
1,932,313	-		GFF1909	0.72	-1.7
1,932,313	-		GFF1909	0.72	-2.7
1,932,313	-		GFF1909	0.72	-2.5
1,932,313	-		GFF1909	0.72	-2.9
1,932,313	-		GFF1909	0.72	-1.8
1,932,313	-		GFF1909	0.72	-2.1
1,932,313	-		GFF1909	0.72	-3.1
1,932,313	-		GFF1909	0.72	-2.5
1,932,313	-		GFF1909	0.72	-3.1
1,932,313	-		GFF1909	0.72	-1.6
1,932,313	-		GFF1909	0.72	-1.0
1,932,313	-		GFF1909	0.72	-1.9
1,932,313	-		GFF1909	0.72	-3.1
1,932,313	-		GFF1909	0.72	-1.8
1,932,314	-		GFF1909	0.72	-2.5
1,932,314	-		GFF1909	0.72	-1.9
1,932,324	+		GFF1909	0.76	-2.6
1,932,325	+		GFF1909	0.76	-2.1
1,932,331	+		GFF1909	0.78	-2.8
1,932,332	-		GFF1909	0.79	-1.3
1,932,359	-		GFF1909	0.89	-3.5
1,932,371	-				-2.8
1,932,373	+				-1.3
1,932,402	-				-1.1
1,932,404	-				+0.8
1,932,406	-				+0.7
1,932,407	-				+0.4
1,932,498	+				+1.4
1,933,618	-				-1.2
1,933,650	+				-1.5
1,933,650	+				+0.2
1,933,670	+				-0.3
1,933,685	-				-1.2
1,933,695	-				+0.5
1,933,700	+				+1.2
1,933,708	-				-0.4
1,933,748	+				-0.4
1,933,765	+				-0.6
1,933,767	-				-0.6
1,933,774	+				+0.1
1,933,774	+				-0.5
1,933,782	-				-0.1
1,933,873	+		GFF1911	0.11	+0.1
1,933,946	-		GFF1911	0.21	+0.4
1,933,953	+		GFF1911	0.22	-2.7
1,933,957	+		GFF1911	0.22	-0.9
1,933,957	+		GFF1911	0.22	-2.3
1,933,957	+		GFF1911	0.22	-0.2
1,933,957	+		GFF1911	0.22	+1.2
1,933,965	-		GFF1911	0.23	+0.4
1,933,975	+		GFF1911	0.24	+0.2
1,933,992	+		GFF1911	0.27	-0.2
1,933,992	+		GFF1911	0.27	+0.5
1,933,992	+		GFF1911	0.27	-0.2
1,934,008	-		GFF1911	0.29	-0.2
1,934,015	-		GFF1911	0.29	+1.1
1,934,036	+		GFF1911	0.32	-0.2
1,934,053	-		GFF1911	0.34	-0.9
1,934,064	+		GFF1911	0.36	-2.3
1,934,072	+		GFF1911	0.37	+0.9
1,934,088	-		GFF1911	0.39	+0.9
1,934,119	-		GFF1911	0.43	+0.2
1,934,119	-		GFF1911	0.43	-0.5
1,934,125	-		GFF1911	0.44	+0.2
1,934,189	-		GFF1911	0.52	+0.2
1,934,189	-		GFF1911	0.52	-0.1
1,934,193	-		GFF1911	0.52	-0.3
1,934,193	-		GFF1911	0.52	+0.0
1,934,226	-		GFF1911	0.57	+0.6
1,934,226	-		GFF1911	0.57	+0.6
1,934,256	+		GFF1911	0.60	-0.1
1,934,263	-		GFF1911	0.61	+0.7
1,934,285	-		GFF1911	0.64	-1.7
1,934,305	+		GFF1911	0.67	-1.1
1,934,310	+		GFF1911	0.67	-1.5
1,934,310	+		GFF1911	0.67	+0.5
1,934,310	+		GFF1911	0.67	-1.3
1,934,313	-		GFF1911	0.68	-0.8
1,934,315	+		GFF1911	0.68	-1.1
1,934,315	+		GFF1911	0.68	+1.0
1,934,315	+		GFF1911	0.68	+0.0
1,934,315	+		GFF1911	0.68	-0.8
1,934,318	-		GFF1911	0.68	-0.9
1,934,318	-		GFF1911	0.68	-0.9
1,934,318	-		GFF1911	0.68	-0.2
1,934,323	-		GFF1911	0.69	-0.8
1,934,323	-		GFF1911	0.69	-1.0
1,934,323	-		GFF1911	0.69	+0.4
1,934,323	-		GFF1911	0.69	+0.7
1,934,352	+		GFF1911	0.73	+0.4
1,934,357	-		GFF1911	0.73	-2.1
1,934,359	+		GFF1911	0.74	-1.5
1,934,427	+		GFF1911	0.82	+0.6
1,934,430	-		GFF1911	0.83	-0.3
1,934,432	+		GFF1911	0.83	+1.4
1,934,436	+		GFF1911	0.83	-1.7
1,934,437	+		GFF1911	0.84	-0.4
1,934,440	-		GFF1911	0.84	+0.0
1,934,445	-		GFF1911	0.85	-2.0
1,934,456	+		GFF1911	0.86	-1.6
1,934,461	+		GFF1911	0.87	+0.4
1,934,461	+		GFF1911	0.87	+0.1
1,934,461	+		GFF1911	0.87	-0.6
1,934,466	+		GFF1911	0.87	-0.6
1,934,469	-		GFF1911	0.88	-0.3
1,934,471	+		GFF1911	0.88	+1.1
1,934,471	+		GFF1911	0.88	-0.2
1,934,479	-		GFF1911	0.89	-0.4
1,934,486	-		GFF1911	0.90	-0.2
1,934,491	-				+0.3
1,934,509	+				+0.9
1,934,519	-				-1.3
1,934,520	-				+0.4
1,934,520	-				-0.2
1,934,545	+				+0.4
1,934,546	+				+0.4
1,934,553	-				-0.5
1,934,574	-				-0.7