Strain Fitness in Sphingobium sp. HT1-2 around GFF1850

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,879,997	-		GFF1849	0.60	-0.3
1,880,001	+		GFF1849	0.60	+0.4
1,880,010	+		GFF1849	0.61	+1.1
1,880,018	-		GFF1849	0.61	-1.2
1,880,026	+		GFF1849	0.61	+1.3
1,880,073	+		GFF1849	0.63	-0.7
1,880,073	+		GFF1849	0.63	-2.3
1,880,081	+		GFF1849	0.64	-0.6
1,880,081	-		GFF1849	0.64	-0.9
1,880,086	-		GFF1849	0.64	+0.2
1,880,087	+		GFF1849	0.64	-0.5
1,880,087	+		GFF1849	0.64	+1.0
1,880,087	+		GFF1849	0.64	-1.6
1,880,087	+		GFF1849	0.64	-1.4
1,880,088	+		GFF1849	0.64	-0.9
1,880,088	+		GFF1849	0.64	+0.6
1,880,088	+		GFF1849	0.64	+1.3
1,880,088	+		GFF1849	0.64	-1.0
1,880,088	+		GFF1849	0.64	-1.4
1,880,088	+		GFF1849	0.64	-0.5
1,880,091	-		GFF1849	0.64	-0.5
1,880,095	-		GFF1849	0.64	+1.9
1,880,096	-		GFF1849	0.64	+1.4
1,880,096	-		GFF1849	0.64	-0.3
1,880,096	-		GFF1849	0.64	-1.8
1,880,096	-		GFF1849	0.64	-0.9
1,880,096	-		GFF1849	0.64	-2.1
1,880,096	-		GFF1849	0.64	+0.3
1,880,097	-		GFF1849	0.64	-1.8
1,880,115	+		GFF1849	0.65	-1.3
1,880,115	+		GFF1849	0.65	-0.6
1,880,123	-		GFF1849	0.65	-0.5
1,880,128	+		GFF1849	0.66	-0.7
1,880,130	+		GFF1849	0.66	-0.1
1,880,130	+		GFF1849	0.66	+0.1
1,880,130	+		GFF1849	0.66	-2.4
1,880,130	+		GFF1849	0.66	-0.4
1,880,130	+		GFF1849	0.66	+0.4
1,880,130	+		GFF1849	0.66	-1.2
1,880,130	+		GFF1849	0.66	+0.5
1,880,130	+		GFF1849	0.66	-0.3
1,880,130	+		GFF1849	0.66	+0.3
1,880,130	+		GFF1849	0.66	-0.3
1,880,130	+		GFF1849	0.66	-0.2
1,880,130	+		GFF1849	0.66	+0.3
1,880,130	+		GFF1849	0.66	-0.2
1,880,130	+		GFF1849	0.66	-1.9
1,880,130	+		GFF1849	0.66	-1.6
1,880,130	+		GFF1849	0.66	-0.1
1,880,130	+		GFF1849	0.66	+0.6
1,880,130	+		GFF1849	0.66	+0.4
1,880,130	+		GFF1849	0.66	-1.1
1,880,130	+		GFF1849	0.66	-0.7
1,880,130	+		GFF1849	0.66	-1.4
1,880,130	+		GFF1849	0.66	-0.4
1,880,130	+		GFF1849	0.66	-0.2
1,880,130	+		GFF1849	0.66	+0.1
1,880,130	+		GFF1849	0.66	-1.6
1,880,130	+		GFF1849	0.66	-1.0
1,880,130	+		GFF1849	0.66	+0.9
1,880,130	+		GFF1849	0.66	-1.4
1,880,130	+		GFF1849	0.66	+0.5
1,880,131	+		GFF1849	0.66	+0.6
1,880,136	-		GFF1849	0.66	-1.0
1,880,138	-		GFF1849	0.66	+0.9
1,880,138	-		GFF1849	0.66	+1.8
1,880,138	-		GFF1849	0.66	-1.1
1,880,138	-		GFF1849	0.66	+0.0
1,880,138	-		GFF1849	0.66	+0.1
1,880,138	-		GFF1849	0.66	+0.4
1,880,138	-		GFF1849	0.66	-0.9
1,880,138	-		GFF1849	0.66	+1.2
1,880,138	-		GFF1849	0.66	+0.6
1,880,138	-		GFF1849	0.66	+0.4
1,880,138	-		GFF1849	0.66	+0.6
1,880,138	-		GFF1849	0.66	-1.1
1,880,138	-		GFF1849	0.66	-1.9
1,880,138	-		GFF1849	0.66	-1.3
1,880,138	-		GFF1849	0.66	-0.2
1,880,138	-		GFF1849	0.66	-0.1
1,880,138	-		GFF1849	0.66	+0.1
1,880,138	-		GFF1849	0.66	+0.7
1,880,138	-		GFF1849	0.66	-0.8
1,880,138	-		GFF1849	0.66	-0.2
1,880,138	-		GFF1849	0.66	-2.1
1,880,138	-		GFF1849	0.66	+0.2
1,880,138	-		GFF1849	0.66	-0.6
1,880,138	-		GFF1849	0.66	-1.2
1,880,138	-		GFF1849	0.66	+1.4
1,880,138	-		GFF1849	0.66	-0.5
1,880,138	-		GFF1849	0.66	+0.5
1,880,138	-		GFF1849	0.66	-0.5
1,880,138	-		GFF1849	0.66	+0.3
1,880,138	-		GFF1849	0.66	+0.8
1,880,138	-		GFF1849	0.66	+0.1
1,880,138	-		GFF1849	0.66	-2.2
1,880,138	-		GFF1849	0.66	-0.3
1,880,138	-		GFF1849	0.66	-0.4
1,880,138	-		GFF1849	0.66	-0.6
1,880,138	-		GFF1849	0.66	+0.3
1,880,138	-		GFF1849	0.66	-1.4
1,880,138	-		GFF1849	0.66	-1.3
1,880,138	-		GFF1849	0.66	+0.0
1,880,138	-		GFF1849	0.66	+0.5
1,880,138	-		GFF1849	0.66	-1.6
1,880,138	-		GFF1849	0.66	-0.4
1,880,138	-		GFF1849	0.66	+0.3
1,880,138	-		GFF1849	0.66	-1.2
1,880,138	-		GFF1849	0.66	+0.4
1,880,138	-		GFF1849	0.66	-0.5
1,880,198	+		GFF1849	0.69	-1.6
1,880,206	+		GFF1849	0.69	+0.9
1,880,225	+		GFF1849	0.70	-0.7
1,880,261	+		GFF1849	0.71	-0.7
1,880,290	-		GFF1849	0.72	-3.2
1,880,292	+		GFF1849	0.73	+0.6
1,880,292	+		GFF1849	0.73	+1.4
1,880,293	+		GFF1849	0.73	-0.0
1,880,300	-		GFF1849	0.73	+0.2
1,880,301	-		GFF1849	0.73	+1.0
1,880,331	-		GFF1849	0.74	-1.4
1,880,345	+		GFF1849	0.75	-2.0
1,880,345	+		GFF1849	0.75	+1.1
1,880,345	+		GFF1849	0.75	-1.2
1,880,353	-		GFF1849	0.75	-0.7
1,880,358	-		GFF1849	0.75	-2.1
1,880,405	-		GFF1849	0.77	-0.7
1,880,420	+		GFF1849	0.78	-1.1
1,880,441	+		GFF1849	0.79	-1.3
1,880,445	+		GFF1849	0.79	+0.2
1,880,447	-		GFF1849	0.79	+0.3
1,880,447	-		GFF1849	0.79	-0.1
1,880,449	+		GFF1849	0.79	-1.2
1,880,449	+		GFF1849	0.79	-0.3
1,880,449	+		GFF1849	0.79	-0.0
1,880,449	-		GFF1849	0.79	+0.3
1,880,457	-		GFF1849	0.80	-0.3
1,880,457	-		GFF1849	0.80	-1.3
1,880,457	-		GFF1849	0.80	+0.8
1,880,469	+		GFF1849	0.80	-1.7
1,880,477	-		GFF1849	0.80	+0.5
1,880,479	+		GFF1849	0.81	-1.3
1,880,484	+		GFF1849	0.81	+0.8
1,880,504	+		GFF1849	0.82	-2.0
1,880,508	-		GFF1849	0.82	-0.1
1,880,525	+		GFF1849	0.82	-1.4
1,880,525	+		GFF1849	0.82	+0.1
1,880,525	+		GFF1849	0.82	-0.2
1,880,525	+		GFF1849	0.82	+0.5
1,880,533	-		GFF1849	0.83	-1.2
1,880,533	-		GFF1849	0.83	+0.6
1,880,533	-		GFF1849	0.83	-1.2
1,880,533	-		GFF1849	0.83	+0.3
1,880,533	-		GFF1849	0.83	-1.2
1,880,533	-		GFF1849	0.83	-1.3
1,880,533	-		GFF1849	0.83	+0.9
1,880,547	+		GFF1849	0.83	-1.4
1,880,570	-		GFF1849	0.84	-0.7
1,880,601	-		GFF1849	0.86	+0.9
1,880,611	-		GFF1849	0.86	+0.6
1,880,623	-		GFF1849	0.87	-0.6
1,880,626	+		GFF1849	0.87	-1.1
1,880,628	-		GFF1849	0.87	-1.4
1,880,634	-		GFF1849	0.87	-2.9
1,880,634	-		GFF1849	0.87	-0.5
1,880,638	+		GFF1849	0.87	-0.6
1,880,643	+		GFF1849	0.87	+0.7
1,880,651	-		GFF1849	0.88	-0.7
1,880,669	-		GFF1849	0.89	-0.6
1,880,695	+		GFF1849	0.90	-1.5
1,880,700	+		GFF1849	0.90	+0.3
1,880,700	+		GFF1849	0.90	+1.1
1,880,708	-				-0.2
1,880,720	-				+0.3
1,880,722	+				+0.4
1,880,722	+				-1.4
1,880,727	+				-1.0
1,880,727	+				-0.2
1,880,735	-				-0.9
1,880,746	+				-0.8
1,880,754	-				+0.2
1,880,764	+				-0.7
1,880,767	+				+0.8
1,880,791	-				-1.3
1,880,793	+				-0.5
1,880,797	-				+0.3
1,880,814	+				-0.2
1,880,841	+				-1.9
1,880,841	+				-2.9
1,880,841	+				-0.9
1,880,841	+				+1.8
1,880,841	+				-2.1
1,880,841	+				-1.3
1,880,841	+				+0.8
1,880,846	+				-0.3
1,880,846	+				+0.0
1,880,846	+				-1.8
1,880,846	+				-1.2
1,880,849	-				-1.4
1,880,849	-				-1.2
1,880,849	-				-0.0
1,880,851	+				-1.6
1,880,851	+				-0.7
1,880,851	+				-0.3
1,880,851	+				-0.3
1,880,851	+				+0.7
1,880,851	+				-2.4
1,880,851	+				+0.8
1,880,851	+				-0.8
1,880,851	+				-0.9
1,880,851	+				-1.4
1,880,851	+				-1.5
1,880,854	-				-0.1
1,880,854	-				-0.1
1,880,854	-				-2.1
1,880,859	-				-1.2
1,880,859	-				-0.2
1,880,859	-				-1.4
1,880,859	-				+0.9
1,880,859	-				+0.4
1,880,859	-				+0.7
1,880,859	-				-0.5
1,880,859	-				-1.2
1,880,859	-				+0.4
1,880,859	-				-0.2
1,880,859	-				+0.2
1,880,859	-				+1.0
1,880,859	-				+0.3
1,880,859	-				+0.5
1,880,859	-				-0.2
1,880,859	-				+0.0
1,880,859	-				-1.3
1,880,861	+				+0.6
1,880,869	-				-0.5
1,880,880	-				-1.4
1,880,883	-				+1.0
1,880,900	-				+1.1
1,880,915	+				-1.5
1,880,930	+				-0.7
1,880,982	-				-0.0
1,881,013	+				-0.7
1,881,018	+				+1.2
1,881,021	-				-1.6
1,881,021	-				+0.3
1,881,021	-				-0.7
1,881,021	-				-1.0
1,881,081	+		GFF1850	0.12	-0.5
1,881,081	+		GFF1850	0.12	+0.5
1,881,083	+		GFF1850	0.13	+0.2
1,881,089	-		GFF1850	0.14	-1.5
1,881,089	-		GFF1850	0.14	+1.5
1,881,099	-		GFF1850	0.15	+0.1
1,881,117	+		GFF1850	0.18	-0.4
1,881,118	+		GFF1850	0.18	-0.7
1,881,125	+		GFF1850	0.19	+0.4
1,881,142	-		GFF1850	0.22	-0.8
1,881,142	-		GFF1850	0.22	-0.2
1,881,153	-		GFF1850	0.23	+0.5
1,881,162	+		GFF1850	0.25	-1.3
1,881,167	-		GFF1850	0.25	+1.3
1,881,170	-		GFF1850	0.26	-2.0
1,881,170	-		GFF1850	0.26	-0.8
1,881,170	-		GFF1850	0.26	-0.5
1,881,170	-		GFF1850	0.26	-0.3
1,881,172	+		GFF1850	0.26	+0.7
1,881,180	-		GFF1850	0.27	-0.3
1,881,180	-		GFF1850	0.27	+0.7
1,881,180	-		GFF1850	0.27	+0.5
1,881,180	-		GFF1850	0.27	+0.9
1,881,183	-		GFF1850	0.28	+0.2
1,881,185	+		GFF1850	0.28	+1.1
1,881,185	+		GFF1850	0.28	-1.2
1,881,185	-		GFF1850	0.28	-1.5
1,881,210	-		GFF1850	0.32	+0.4
1,881,211	-		GFF1850	0.32	+0.5
1,881,217	+		GFF1850	0.33	-0.2
1,881,217	+		GFF1850	0.33	+0.5
1,881,217	+		GFF1850	0.33	+0.3
1,881,217	+		GFF1850	0.33	-1.5
1,881,217	+		GFF1850	0.33	+0.4
1,881,217	+		GFF1850	0.33	+0.4
1,881,217	+		GFF1850	0.33	+0.8
1,881,217	+		GFF1850	0.33	-1.4
1,881,217	+		GFF1850	0.33	-1.3
1,881,218	-		GFF1850	0.33	-0.3
1,881,225	-		GFF1850	0.34	-0.5
1,881,225	-		GFF1850	0.34	-1.7
1,881,225	-		GFF1850	0.34	+0.0
1,881,225	-		GFF1850	0.34	+0.3
1,881,225	-		GFF1850	0.34	-0.9
1,881,225	-		GFF1850	0.34	-0.3
1,881,225	-		GFF1850	0.34	+0.2
1,881,225	-		GFF1850	0.34	+0.2
1,881,227	-		GFF1850	0.34	+1.1
1,881,266	-		GFF1850	0.40	-1.3
1,881,270	+		GFF1850	0.41	-0.4
1,881,270	+		GFF1850	0.41	-1.3
1,881,270	+		GFF1850	0.41	-0.3
1,881,278	-		GFF1850	0.42	-0.2
1,881,278	-		GFF1850	0.42	-2.5
1,881,278	-		GFF1850	0.42	+1.4
1,881,278	-		GFF1850	0.42	-0.2
1,881,278	-		GFF1850	0.42	-0.3
1,881,278	-		GFF1850	0.42	+0.6
1,881,290	+		GFF1850	0.44	-0.4
1,881,290	+		GFF1850	0.44	+1.2
1,881,290	+		GFF1850	0.44	-0.5
1,881,290	+		GFF1850	0.44	+1.2
1,881,290	+		GFF1850	0.44	-0.2
1,881,290	+		GFF1850	0.44	-1.9
1,881,290	+		GFF1850	0.44	+0.8
1,881,290	+		GFF1850	0.44	-1.4
1,881,290	+		GFF1850	0.44	+0.3
1,881,298	-		GFF1850	0.45	-2.5
1,881,298	-		GFF1850	0.45	-0.2
1,881,298	-		GFF1850	0.45	-0.1
1,881,298	-		GFF1850	0.45	-0.4
1,881,298	-		GFF1850	0.45	+1.4
1,881,298	-		GFF1850	0.45	+0.1
1,881,298	-		GFF1850	0.45	-0.7
1,881,298	-		GFF1850	0.45	-0.8
1,881,309	+		GFF1850	0.46	-0.3
1,881,353	-		GFF1850	0.53	-0.2
1,881,358	+		GFF1850	0.54	-0.9
1,881,358	+		GFF1850	0.54	+0.1
1,881,407	-		GFF1850	0.61	-0.1
1,881,442	-		GFF1850	0.66	+0.3
1,881,451	-		GFF1850	0.68	-0.0
1,881,451	-		GFF1850	0.68	+0.6
1,881,462	+		GFF1850	0.69	-2.3
1,881,474	-		GFF1850	0.71	-1.7
1,881,476	+		GFF1850	0.71	-0.9
1,881,479	-		GFF1850	0.72	-0.7
1,881,484	-		GFF1850	0.72	-1.7
1,881,487	-		GFF1850	0.73	-2.2
1,881,512	-		GFF1850	0.77	+0.4
1,881,515	+		GFF1850	0.77	-1.4
1,881,539	+		GFF1850	0.81	+0.7
1,881,546	+		GFF1850	0.82	+0.4
1,881,546	+		GFF1850	0.82	+0.9
1,881,549	-		GFF1850	0.82	-0.3
1,881,566	-		GFF1850	0.85	-0.3
1,881,582	+		GFF1850	0.87	-1.2
1,881,628	+				-0.2
1,881,661	-				-2.1
1,881,666	-				-0.5
1,881,682	+				-1.4
1,881,692	-				+1.0
1,881,731	-				+1.3
1,881,733	+				-1.1
1,881,769	+				-2.2
1,881,832	+				-1.2
1,881,832	+				-0.3
1,881,832	+				-1.7
1,881,835	-				+0.9
1,881,849	+				-2.1
1,881,857	-				+0.6
1,881,857	-				+0.6
1,881,899	-				+0.6
1,881,901	+				-0.4
1,881,906	+		GFF1851	0.10	+0.3
1,881,906	+		GFF1851	0.10	-1.2
1,881,906	+		GFF1851	0.10	-1.6
1,881,914	-		GFF1851	0.11	-2.2
1,882,005	-		GFF1851	0.23	-0.9
1,882,014	+		GFF1851	0.24	-0.2
1,882,014	+		GFF1851	0.24	+0.6
1,882,014	-		GFF1851	0.24	+0.4
1,882,014	-		GFF1851	0.24	+0.8
1,882,022	-		GFF1851	0.25	-0.7
1,882,027	-		GFF1851	0.26	-0.3
1,882,027	-		GFF1851	0.26	-1.4
1,882,027	-		GFF1851	0.26	+0.3
1,882,054	-		GFF1851	0.30	-3.0
1,882,078	+		GFF1851	0.33	-2.3
1,882,130	+		GFF1851	0.40	-1.0
1,882,130	+		GFF1851	0.40	-2.3
1,882,138	-		GFF1851	0.41	-1.7
1,882,171	+		GFF1851	0.45	-1.2
1,882,179	-		GFF1851	0.46	-1.6
1,882,208	-		GFF1851	0.50	-2.0
1,882,213	+		GFF1851	0.51	+0.3
1,882,235	+		GFF1851	0.54	-0.4
1,882,235	+		GFF1851	0.54	+1.1
1,882,235	+		GFF1851	0.54	+1.0
1,882,237	+		GFF1851	0.54	-1.3
1,882,245	-		GFF1851	0.55	-0.9
1,882,254	+		GFF1851	0.56	-1.4
1,882,254	+		GFF1851	0.56	-1.1
1,882,259	+		GFF1851	0.57	-0.1
1,882,262	+		GFF1851	0.57	-1.9
1,882,262	+		GFF1851	0.57	-1.9
1,882,262	-		GFF1851	0.57	-0.4
1,882,262	-		GFF1851	0.57	-1.2
1,882,262	-		GFF1851	0.57	-1.7
1,882,267	-		GFF1851	0.58	-1.3
1,882,275	-		GFF1851	0.59	+0.7
1,882,289	-		GFF1851	0.61	-1.8
1,882,311	+		GFF1851	0.64	-2.3
1,882,311	+		GFF1851	0.64	-1.7
1,882,311	+		GFF1851	0.64	-1.5
1,882,311	+		GFF1851	0.64	+0.1
1,882,311	+		GFF1851	0.64	-0.4
1,882,311	+		GFF1851	0.64	-0.2
1,882,311	+		GFF1851	0.64	-1.9
1,882,314	-		GFF1851	0.64	-2.6
1,882,316	+		GFF1851	0.65	-2.2
1,882,319	-		GFF1851	0.65	-0.8
1,882,319	-		GFF1851	0.65	-1.2
1,882,319	-		GFF1851	0.65	-0.8
1,882,319	-		GFF1851	0.65	-1.8
1,882,319	-		GFF1851	0.65	-0.7
1,882,319	-		GFF1851	0.65	+0.0
1,882,319	-		GFF1851	0.65	-0.4
1,882,319	-		GFF1851	0.65	-1.8
1,882,324	-		GFF1851	0.66	+0.8
1,882,335	+		GFF1851	0.67	+0.1
1,882,340	+		GFF1851	0.68	-0.6
1,882,340	+		GFF1851	0.68	-1.4
1,882,340	+		GFF1851	0.68	+0.0
1,882,343	-		GFF1851	0.68	-0.2
1,882,348	-		GFF1851	0.69	-1.5
1,882,348	-		GFF1851	0.69	-1.2
1,882,380	-		GFF1851	0.73	-1.3
1,882,415	+		GFF1851	0.78	-0.1
1,882,469	-		GFF1851	0.85	+2.0
1,882,475	-		GFF1851	0.86	-1.7
1,882,480	-		GFF1851	0.86	-1.3
1,882,527	-				-2.1
1,882,528	-				-0.3
1,882,537	+				-0.7
1,882,567	+				-1.5
1,882,567	+				+1.1
1,882,578	+				+0.6