Strain Fitness in Sphingobium sp. HT1-2 around GFF182

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
184,186	+		GFF180	0.69	-0.7
184,213	+		GFF180	0.73	+0.4
184,216	-		GFF180	0.73	+1.1
184,218	+		GFF180	0.73	+0.4
184,231	+		GFF180	0.75	-2.2
184,246	+		GFF180	0.76	-1.2
184,246	+		GFF180	0.76	-0.5
184,246	+		GFF180	0.76	+0.7
184,246	+		GFF180	0.76	-1.6
184,246	+		GFF180	0.76	+0.5
184,247	-		GFF180	0.76	-1.5
184,254	-		GFF180	0.77	+0.5
184,254	-		GFF180	0.77	-1.6
184,254	-		GFF180	0.77	-0.0
184,261	+		GFF180	0.78	-1.5
184,262	+		GFF180	0.78	-2.0
184,278	+		GFF180	0.80	-1.2
184,285	-		GFF180	0.81	-0.4
184,286	-		GFF180	0.81	-0.1
184,331	-		GFF180	0.86	-1.2
184,341	+		GFF180	0.87	-0.7
184,341	+		GFF180	0.87	-1.7
184,343	+		GFF180	0.88	-1.2
184,359	-		GFF180	0.90	-0.5
184,364	-				-0.2
184,437	-				+0.2
184,440	+				+0.3
184,463	+				+0.3
184,471	-				+0.3
184,472	+				-0.1
184,501	+				+0.1
184,508	-				+0.3
184,509	-				+0.3
184,514	-				+0.3
184,519	+				-0.8
184,519	+				+0.9
184,519	+				-0.9
184,526	+				-0.8
184,534	+				-0.8
184,534	-				-0.3
184,539	+				+1.4
184,550	+				-1.5
184,558	-				+0.0
184,568	-				+0.1
184,589	-				+0.5
184,615	+				+1.1
184,616	+				-0.1
184,621	+				-1.7
184,643	+				-0.5
184,646	-				-1.4
184,646	-				-0.4
184,646	-				-0.1
184,646	-				+0.6
184,648	+				+0.9
184,665	-				-0.1
184,665	-				+1.2
184,674	+				-0.6
184,680	-				-0.6
184,683	+				+0.2
184,706	+		GFF181	0.11	+0.4
184,708	+		GFF181	0.12	-0.2
184,716	-		GFF181	0.15	-0.3
184,741	+		GFF181	0.26	+0.3
184,744	-		GFF181	0.27	-2.0
184,744	-		GFF181	0.27	-0.5
184,755	+		GFF181	0.32	-1.6
184,755	+		GFF181	0.32	-1.2
184,755	+		GFF181	0.32	+1.0
184,755	-		GFF181	0.32	+0.2
184,762	-		GFF181	0.35	-1.2
184,762	-		GFF181	0.35	+0.6
184,780	-		GFF181	0.43	-0.3
184,788	-		GFF181	0.46	+0.5
184,788	-		GFF181	0.46	-0.8
184,789	-		GFF181	0.47	+0.4
184,791	-		GFF181	0.48	-0.7
184,791	-		GFF181	0.48	-2.6
184,791	-		GFF181	0.48	-0.2
184,791	-		GFF181	0.48	-1.3
184,793	-		GFF181	0.48	-0.4
184,806	+		GFF181	0.54	+0.4
184,834	+		GFF181	0.66	-0.3
184,854	+		GFF181	0.75	-1.2
184,864	+		GFF181	0.79	+0.1
184,866	-		GFF181	0.80	+1.0
184,877	-		GFF181	0.85	+0.6
184,880	+		GFF181	0.86	-1.2
184,883	-		GFF181	0.87	-0.5
184,883	-		GFF181	0.87	-2.4
184,885	+		GFF181	0.88	-0.5
184,885	+		GFF181	0.88	+1.0
184,885	+		GFF181	0.88	+0.1
184,885	+		GFF181	0.88	-0.2
184,885	+		GFF181	0.88	-0.2
184,885	+		GFF181	0.88	+0.2
184,888	+		GFF181	0.90	-1.4
184,888	-		GFF181	0.90	+0.0
184,890	+				-0.7
184,890	+				-2.0
184,893	-				-0.0
184,893	-				+0.8
184,893	-				+0.9
184,893	-				-0.3
184,893	-				+0.0
184,893	-				-0.9
184,893	-				-1.7
184,893	-				+0.0
184,893	-				-2.3
184,898	-				-0.8
184,910	+				+0.2
184,910	+				+1.4
184,910	+				-1.7
184,910	+				+0.5
184,910	+				-0.5
184,910	+				+0.8
184,910	+				+0.4
184,910	+				-0.3
184,910	+				-0.1
184,910	+				-0.5
184,910	+				-0.0
184,910	+				-1.6
184,910	+				-0.4
184,910	+				+0.1
184,910	+				+1.4
184,910	+				-0.9
184,915	+				-1.2
184,915	+				+0.3
184,915	+				-0.0
184,918	-				+0.5
184,918	-				+0.2
184,918	-				-0.9
184,918	-				-2.6
184,918	-				+0.3
184,918	-				+0.7
184,918	-				-0.6
184,918	-				-0.3
184,918	-				+1.2
184,918	-				-0.1
184,923	-				+1.3
184,923	-				+1.1
184,923	-				+0.8
184,923	-				-0.3
184,928	+				-1.9
184,928	+				+1.3
184,928	+				-0.5
184,936	-				-0.6
184,936	-				+0.4
184,958	-				-0.7
184,973	+				-0.7
184,981	+				+0.8
184,985	+				+0.6
184,999	-				-0.2
185,015	-				+0.9
185,030	+				-0.2
185,030	+				-0.5
185,030	+				+0.3
185,030	+				-1.2
185,030	+				-0.5
185,035	+				-1.6
185,035	+				+0.0
185,035	+				+0.6
185,038	-				-0.1
185,038	-				-0.1
185,038	-				-1.4
185,038	-				-0.9
185,038	-				-0.2
185,040	+				+0.7
185,040	+				-0.5
185,040	+				-0.1
185,040	+				-0.4
185,040	+				+0.5
185,040	+				-1.0
185,040	+				-0.6
185,040	+				-0.1
185,040	+				+0.0
185,040	+				-1.4
185,040	+				-0.1
185,043	-				-0.4
185,043	-				-1.6
185,048	-				-0.6
185,048	-				+1.2
185,048	-				+0.2
185,048	-				-0.3
185,048	-				-0.2
185,048	-				-1.7
185,048	-				-0.7
185,048	-				+0.3
185,069	+				+0.2
185,077	+				+0.5
185,116	-				-0.4
185,118	+				+0.2
185,120	+				-0.7
185,128	-				-0.0
185,128	-				-2.4
185,128	-				-1.1
185,133	-				+0.4
185,135	-				-1.6
185,135	-				-1.9
185,135	-				-0.3
185,135	-				+0.4
185,153	+				-1.6
185,153	+				+0.6
185,153	+				-0.3
185,160	+				-0.0
185,161	-				-0.4
185,161	-				-0.1
185,161	-				-1.8
185,161	-				-1.9
185,197	-				-0.9
185,209	+				+0.5
185,214	+				-0.2
185,219	+				+0.0
185,222	-				-1.9
185,227	-		GFF182	0.10	-3.0
185,246	-		GFF182	0.14	-1.5
185,258	-		GFF182	0.17	-0.4
185,262	+		GFF182	0.18	-2.8
185,277	-		GFF182	0.21	+0.1
185,316	+		GFF182	0.29	-0.3
185,352	+		GFF182	0.36	-1.3
185,360	-		GFF182	0.38	-0.7
185,361	+		GFF182	0.38	-1.1
185,361	+		GFF182	0.38	+1.4
185,361	+		GFF182	0.38	-0.7
185,369	-		GFF182	0.40	-0.6
185,369	-		GFF182	0.40	-1.4
185,379	-		GFF182	0.42	-0.2
185,379	-		GFF182	0.42	-0.3
185,425	-		GFF182	0.51	+0.0
185,452	+		GFF182	0.57	-0.2
185,453	+		GFF182	0.57	+0.6
185,460	+		GFF182	0.59	+0.8
185,462	+		GFF182	0.59	-0.5
185,462	+		GFF182	0.59	-0.3
185,462	+		GFF182	0.59	+0.6
185,470	-		GFF182	0.61	+0.2
185,481	-		GFF182	0.63	+1.7
185,481	-		GFF182	0.63	+0.3
185,483	+		GFF182	0.63	-0.2
185,491	-		GFF182	0.65	-0.1
185,491	-		GFF182	0.65	-0.5
185,491	-		GFF182	0.65	-1.5
185,491	-		GFF182	0.65	-0.4
185,491	-		GFF182	0.65	+0.2
185,491	-		GFF182	0.65	-1.8
185,491	-		GFF182	0.65	+0.3
185,491	-		GFF182	0.65	-1.2
185,507	-		GFF182	0.68	-0.6
185,509	-		GFF182	0.69	+0.7
185,509	-		GFF182	0.69	+0.1
185,523	+		GFF182	0.72	-1.5
185,528	+		GFF182	0.73	-0.8
185,535	-		GFF182	0.74	-0.8
185,535	-		GFF182	0.74	-0.4
185,544	-		GFF182	0.76	-0.2
185,552	-		GFF182	0.78	+0.1
185,554	-		GFF182	0.78	-0.2
185,554	-		GFF182	0.78	-1.7
185,554	-		GFF182	0.78	-0.7
185,572	-		GFF182	0.82	-0.7
185,572	-		GFF182	0.82	-0.4
185,580	+		GFF182	0.83	-1.2
185,591	+		GFF182	0.86	-1.9
185,613	+				+1.7
185,617	+				-1.0
185,620	-				+0.5
185,623	+				-0.6
185,629	+				-1.2
185,629	+				-0.7
185,631	-				+0.2
185,631	-				-1.1
185,640	+				+0.9
185,648	-				+0.2
185,650	+				-0.6
185,658	-				-0.3
185,659	+				-0.1
185,665	-				-0.2
185,676	+				-0.6
185,742	+				-1.0
185,742	+				+1.3
185,742	+				+0.4
185,745	-				+0.9
185,750	-				-1.1
185,750	-				-0.0
185,750	-				-0.6
185,750	-				-1.2
185,794	+				-0.5
185,801	+				-0.4
185,819	-				+0.4
185,824	+				-0.2
185,824	+				-0.6
185,824	+				+0.6
185,824	+				-1.5
185,824	+				+0.8
185,824	+				-2.6
185,824	+				-1.2
185,824	+				+0.4
185,832	-				-1.3
185,832	-				-1.2
185,832	-				-1.0
185,832	-				-0.2
185,850	+				+0.6
185,913	+		GFF183	0.14	-1.0
185,924	+		GFF183	0.16	-0.7
185,927	+		GFF183	0.16	+1.2
185,927	+		GFF183	0.16	+0.5
185,927	+		GFF183	0.16	-1.0
185,935	-		GFF183	0.17	-2.4
185,935	-		GFF183	0.17	+0.1
185,945	+		GFF183	0.19	-1.7
185,950	+		GFF183	0.20	-0.5
185,963	+		GFF183	0.22	-0.5
185,971	-		GFF183	0.23	-0.2
185,973	+		GFF183	0.24	-1.3
185,993	+		GFF183	0.27	+0.4
186,001	+		GFF183	0.28	+0.1
186,006	+		GFF183	0.29	+0.8
186,009	-		GFF183	0.30	-1.4
186,014	-		GFF183	0.31	-0.1
186,036	+		GFF183	0.34	-0.3
186,036	-		GFF183	0.34	+0.4
186,051	-		GFF183	0.37	-1.1
186,056	-		GFF183	0.37	-0.7
186,063	+		GFF183	0.39	-1.5
186,065	+		GFF183	0.39	-0.0
186,085	+		GFF183	0.42	-2.0
186,140	+		GFF183	0.51	-0.7
186,140	+		GFF183	0.51	-0.6
186,148	-		GFF183	0.53	+0.2
186,156	-		GFF183	0.54	+0.4
186,159	-		GFF183	0.55	-1.2
186,174	-		GFF183	0.57	+0.4
186,180	+		GFF183	0.58	+0.5
186,180	+		GFF183	0.58	-1.5
186,214	+		GFF183	0.64	+0.9
186,219	+		GFF183	0.65	-1.5
186,219	+		GFF183	0.65	+0.0
186,219	+		GFF183	0.65	-0.6
186,219	+		GFF183	0.65	-0.2
186,219	+		GFF183	0.65	+0.1
186,224	+		GFF183	0.65	-0.0
186,227	-		GFF183	0.66	+0.3
186,227	-		GFF183	0.66	+0.0
186,232	-		GFF183	0.67	-0.9
186,241	+		GFF183	0.68	-0.2
186,243	+		GFF183	0.68	-2.2
186,249	-		GFF183	0.69	-2.4
186,251	-		GFF183	0.70	-0.4
186,276	+		GFF183	0.74	-0.4
186,276	+		GFF183	0.74	-0.8
186,284	-		GFF183	0.75	-0.5
186,284	-		GFF183	0.75	-2.1
186,284	-		GFF183	0.75	+0.9
186,284	-		GFF183	0.75	+0.0
186,291	+		GFF183	0.76	-0.8
186,297	+		GFF183	0.77	-1.0
186,297	+		GFF183	0.77	+0.1
186,299	-		GFF183	0.78	+0.5
186,299	-		GFF183	0.78	-1.1
186,300	-		GFF183	0.78	-1.0
186,305	-		GFF183	0.79	-1.1
186,305	-		GFF183	0.79	+0.8
186,324	+		GFF183	0.82	-1.5
186,332	-		GFF183	0.83	-0.7
186,332	-		GFF183	0.83	+0.2
186,346	-		GFF183	0.86	-1.2
186,346	-		GFF183	0.86	-2.0
186,346	-		GFF183	0.86	-1.8
186,355	+		GFF183	0.87	-0.3
186,358	-		GFF183	0.88	-0.4
186,358	-		GFF183	0.88	-0.3
186,358	-		GFF183	0.88	-1.7
186,365	+		GFF183	0.89	-1.2
186,391	-				-0.2
186,402	+				+0.1
186,408	+				-0.6
186,408	+				-0.4
186,410	+				-0.2
186,410	+				-0.6
186,410	+				-1.0
186,410	+				-2.4
186,410	+				-0.0
186,410	+				-1.1
186,410	+				-0.6
186,410	+				-0.3
186,410	-				+0.0
186,410	-				+0.1
186,416	-				+0.0
186,416	-				+0.4
186,417	-				-0.7
186,417	-				+0.2
186,417	-				-2.0
186,418	-				-1.2
186,418	-				+0.5
186,418	-				+0.6
186,418	-				-1.1
186,431	-				-2.1
186,516	+				-2.2
186,524	-				+0.1
186,524	-				-0.7
186,536	+				+0.6
186,536	+				-0.6
186,544	-				-2.8
186,553	+				+0.5
186,558	+				-0.5
186,558	+				-1.5
186,561	-				-0.4
186,566	-				+0.4
186,570	+				-0.4
186,571	-				-1.0
186,571	-				-0.4
186,573	+				-0.5
186,575	+				+1.3
186,575	+				-2.2
186,575	+				-1.4
186,578	-				-1.5
186,583	+				-0.9
186,583	-				-0.4
186,583	-				-0.9
186,588	-				-0.2
186,588	-				-1.4
186,593	-				-2.3
186,595	-				-0.1
186,601	+				+0.9
186,618	+				-0.2
186,634	-		GFF184	0.12	+1.4
186,650	+		GFF184	0.15	-2.0
186,657	+		GFF184	0.16	-2.3