Strain Fitness in Sphingobium sp. HT1-2 around GFF1804

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,825,039	+				-0.8
1,825,045	-				-1.0
1,825,079	+				+0.5
1,825,084	+				+0.3
1,825,107	+				-1.3
1,825,107	+				+0.8
1,825,107	+				+0.1
1,825,115	-				+1.1
1,825,117	-				+0.8
1,825,125	+				-0.1
1,825,138	+				+0.6
1,825,146	-				-0.5
1,825,188	+				+1.2
1,825,235	+				-0.6
1,825,235	+				-0.5
1,825,240	+				-0.9
1,825,243	-				+0.7
1,825,245	+				-1.2
1,825,245	+				-2.1
1,825,245	+				+0.1
1,825,246	+				-1.0
1,825,253	-				-1.1
1,825,253	-				+2.0
1,825,254	-				+1.1
1,825,279	+				-0.6
1,825,287	-				-1.3
1,825,310	-				+1.4
1,825,320	+				-0.7
1,825,328	-				-1.3
1,825,349	+				-1.4
1,825,354	+				+1.3
1,825,354	+				+0.6
1,825,362	-				+1.2
1,825,362	-				-1.4
1,825,395	-				-0.5
1,825,419	+				+2.1
1,825,429	-				-1.0
1,825,439	+				-1.9
1,825,441	+				-0.3
1,825,449	-				-1.4
1,825,449	-				-0.1
1,825,483	+				+0.0
1,825,483	+				-0.2
1,825,483	+				+0.9
1,825,483	+				-0.9
1,825,491	-				-2.3
1,825,491	-				+1.1
1,825,491	-				-0.4
1,825,491	-				-0.7
1,825,518	-				+0.5
1,825,518	-				+1.4
1,825,520	-				-2.5
1,825,534	+				-0.6
1,825,534	+				+0.1
1,825,577	-				-0.5
1,825,619	+		GFF1803	0.14	-1.6
1,825,619	+		GFF1803	0.14	-0.2
1,825,619	+		GFF1803	0.14	-0.2
1,825,619	+		GFF1803	0.14	+0.3
1,825,619	+		GFF1803	0.14	-0.3
1,825,624	+		GFF1803	0.16	-0.9
1,825,624	+		GFF1803	0.16	-0.2
1,825,624	+		GFF1803	0.16	+0.5
1,825,624	+		GFF1803	0.16	+0.8
1,825,624	+		GFF1803	0.16	-0.4
1,825,624	+		GFF1803	0.16	+1.2
1,825,624	+		GFF1803	0.16	-0.7
1,825,624	+		GFF1803	0.16	+0.1
1,825,627	-		GFF1803	0.17	-1.4
1,825,627	-		GFF1803	0.17	-0.2
1,825,632	-		GFF1803	0.19	+0.9
1,825,654	-		GFF1803	0.26	-1.1
1,825,677	+		GFF1803	0.34	-0.2
1,825,742	+		GFF1803	0.57	+0.6
1,825,742	+		GFF1803	0.57	+1.1
1,825,742	+		GFF1803	0.57	+0.2
1,825,742	+		GFF1803	0.57	+0.8
1,825,750	-		GFF1803	0.59	-0.2
1,825,750	-		GFF1803	0.59	+0.2
1,825,750	-		GFF1803	0.59	+0.7
1,825,822	-		GFF1803	0.84	-2.3
1,825,851	+				-1.3
1,825,851	-				-1.6
1,825,856	+				-1.5
1,825,856	+				-0.4
1,825,859	-				-0.8
1,825,861	+				-0.4
1,825,869	-				-0.5
1,825,882	+				+0.6
1,825,882	+				-1.0
1,825,882	+				-1.1
1,825,896	-				-1.7
1,825,901	-				+0.8
1,825,907	+				-0.6
1,825,909	-				-1.5
1,825,912	+				-0.3
1,825,915	-				-0.7
1,825,915	-				-0.7
1,825,915	-				+0.4
1,825,945	-				+0.2
1,825,981	-				-0.5
1,825,998	-				-1.7
1,826,001	+				-1.4
1,826,012	-				-1.1
1,826,030	-				+0.9
1,826,031	+				-1.1
1,826,062	+				+0.5
1,826,070	-				-2.3
1,826,124	+				-1.1
1,826,124	+				-2.6
1,826,132	-				+0.6
1,826,145	+				-0.2
1,826,148	+				-2.2
1,826,148	-				-1.0
1,826,166	+		GFF1804	0.11	+0.3
1,826,174	-		GFF1804	0.11	-0.1
1,826,189	-		GFF1804	0.13	+0.4
1,826,203	+		GFF1804	0.14	-2.3
1,826,203	+		GFF1804	0.14	+0.1
1,826,203	+		GFF1804	0.14	-0.3
1,826,211	+		GFF1804	0.15	-0.3
1,826,211	-		GFF1804	0.15	-1.2
1,826,211	-		GFF1804	0.15	+1.3
1,826,211	-		GFF1804	0.15	+1.1
1,826,211	-		GFF1804	0.15	-0.2
1,826,241	-		GFF1804	0.17	-0.3
1,826,250	-		GFF1804	0.18	-2.1
1,826,257	+		GFF1804	0.18	-0.9
1,826,260	-		GFF1804	0.19	-0.3
1,826,285	+		GFF1804	0.21	-1.0
1,826,285	+		GFF1804	0.21	-1.5
1,826,312	+		GFF1804	0.23	-0.2
1,826,340	+		GFF1804	0.25	-1.0
1,826,343	-		GFF1804	0.25	+0.6
1,826,343	-		GFF1804	0.25	+0.6
1,826,348	-		GFF1804	0.26	-0.6
1,826,350	+		GFF1804	0.26	+1.0
1,826,350	+		GFF1804	0.26	-0.7
1,826,362	-		GFF1804	0.27	+0.1
1,826,362	-		GFF1804	0.27	-1.2
1,826,376	-		GFF1804	0.28	+0.2
1,826,383	+		GFF1804	0.29	+0.3
1,826,383	+		GFF1804	0.29	-0.7
1,826,407	+		GFF1804	0.31	-0.4
1,826,407	+		GFF1804	0.31	-2.7
1,826,415	-		GFF1804	0.31	-0.8
1,826,415	-		GFF1804	0.31	-0.6
1,826,415	-		GFF1804	0.31	+0.4
1,826,425	+		GFF1804	0.32	-1.4
1,826,458	+		GFF1804	0.35	-1.8
1,826,462	-		GFF1804	0.35	+0.1
1,826,462	-		GFF1804	0.35	-0.8
1,826,492	+		GFF1804	0.38	-0.5
1,826,520	+		GFF1804	0.40	-0.2
1,826,554	-		GFF1804	0.43	-0.5
1,826,568	+		GFF1804	0.44	-0.8
1,826,654	+		GFF1804	0.51	+1.4
1,826,654	+		GFF1804	0.51	+0.2
1,826,684	-		GFF1804	0.53	-2.1
1,826,689	-		GFF1804	0.54	-0.5
1,826,705	+		GFF1804	0.55	-0.3
1,826,709	+		GFF1804	0.55	+0.5
1,826,711	-		GFF1804	0.56	+1.4
1,826,717	-		GFF1804	0.56	-1.8
1,826,738	-		GFF1804	0.58	+0.0
1,826,738	-		GFF1804	0.58	+0.1
1,826,789	+		GFF1804	0.62	-0.7
1,826,789	+		GFF1804	0.62	+0.2
1,826,789	+		GFF1804	0.62	+0.8
1,826,806	+		GFF1804	0.63	-0.5
1,826,811	+		GFF1804	0.64	-0.4
1,826,824	-		GFF1804	0.65	-0.8
1,826,826	+		GFF1804	0.65	-0.6
1,826,832	-		GFF1804	0.66	-0.3
1,826,873	+		GFF1804	0.69	+1.3
1,826,892	+		GFF1804	0.70	+0.3
1,826,900	-		GFF1804	0.71	-0.6
1,826,905	-		GFF1804	0.72	-0.7
1,826,909	+		GFF1804	0.72	-0.9
1,826,938	+		GFF1804	0.74	+0.9
1,826,949	-		GFF1804	0.75	-0.9
1,826,950	+		GFF1804	0.75	+0.8
1,826,959	+		GFF1804	0.76	-0.6
1,826,967	-		GFF1804	0.77	+0.2
1,826,967	-		GFF1804	0.77	-2.5
1,826,980	+		GFF1804	0.78	+0.4
1,826,988	-		GFF1804	0.78	-0.5
1,827,003	-		GFF1804	0.80	+1.2
1,827,045	+		GFF1804	0.83	+0.3
1,827,045	+		GFF1804	0.83	-0.8
1,827,045	+		GFF1804	0.83	-1.5
1,827,045	+		GFF1804	0.83	-0.9
1,827,045	+		GFF1804	0.83	+0.6
1,827,045	+		GFF1804	0.83	+0.6
1,827,045	+		GFF1804	0.83	+0.8
1,827,045	+		GFF1804	0.83	+0.8
1,827,045	+		GFF1804	0.83	-2.0
1,827,045	+		GFF1804	0.83	-0.9
1,827,045	+		GFF1804	0.83	+0.0
1,827,045	+		GFF1804	0.83	+0.1
1,827,053	-		GFF1804	0.84	-1.6
1,827,053	-		GFF1804	0.84	+0.6
1,827,053	-		GFF1804	0.84	+0.6
1,827,053	-		GFF1804	0.84	-1.0
1,827,053	-		GFF1804	0.84	-0.9
1,827,053	-		GFF1804	0.84	-2.3
1,827,053	-		GFF1804	0.84	+0.4
1,827,053	-		GFF1804	0.84	+1.0
1,827,053	-		GFF1804	0.84	-1.3
1,827,053	-		GFF1804	0.84	+0.0
1,827,055	+		GFF1804	0.84	-0.7
1,827,063	-		GFF1804	0.84	-0.8
1,827,126	+		GFF1804	0.90	+1.8
1,827,126	+		GFF1804	0.90	+0.1
1,827,126	+		GFF1804	0.90	-1.5
1,827,126	+		GFF1804	0.90	+0.6
1,827,131	+				+1.1
1,827,134	-				-0.5
1,827,134	-				-1.3
1,827,134	-				+0.5
1,827,136	+				-1.4
1,827,136	+				+1.7
1,827,139	-				+0.3
1,827,139	-				+0.1
1,827,139	-				+0.9
1,827,139	-				-1.3
1,827,139	-				-0.6
1,827,144	-				-0.1
1,827,154	-				+0.5
1,827,178	+				+0.8
1,827,178	+				-1.6
1,827,178	+				+0.5
1,827,186	-				-0.1
1,827,193	+				-0.1
1,827,206	-				+0.6
1,827,222	+				-1.0
1,827,255	-				-0.2
1,827,298	-				-2.6
1,827,334	-				-2.1
1,827,337	+				-0.5
1,827,365	+		GFF1805	0.19	+0.6
1,827,365	+		GFF1805	0.19	+1.1
1,827,365	+		GFF1805	0.19	-0.4
1,827,401	+		GFF1805	0.30	-0.3
1,827,418	+		GFF1805	0.36	-0.5
1,827,418	+		GFF1805	0.36	+1.3
1,827,418	+		GFF1805	0.36	-0.1
1,827,418	+		GFF1805	0.36	-2.4
1,827,418	+		GFF1805	0.36	-0.7
1,827,418	+		GFF1805	0.36	-0.6
1,827,418	+		GFF1805	0.36	-0.9
1,827,426	-		GFF1805	0.38	-1.1
1,827,426	-		GFF1805	0.38	+0.5
1,827,426	-		GFF1805	0.38	-0.4
1,827,426	-		GFF1805	0.38	-0.5
1,827,426	-		GFF1805	0.38	+0.9
1,827,442	+		GFF1805	0.44	-0.3
1,827,443	-		GFF1805	0.44	+0.9
1,827,467	-		GFF1805	0.52	+0.4
1,827,473	+		GFF1805	0.54	-1.1
1,827,478	+		GFF1805	0.55	-0.7
1,827,481	-		GFF1805	0.56	+0.6
1,827,481	-		GFF1805	0.56	+1.2
1,827,504	-		GFF1805	0.63	-0.5
1,827,539	+		GFF1805	0.75	-1.2
1,827,539	+		GFF1805	0.75	-0.7
1,827,539	+		GFF1805	0.75	-1.0
1,827,539	+		GFF1805	0.75	+0.5
1,827,539	+		GFF1805	0.75	+1.5
1,827,539	+		GFF1805	0.75	-0.1
1,827,539	+		GFF1805	0.75	-1.5
1,827,539	+		GFF1805	0.75	-0.3
1,827,539	+		GFF1805	0.75	-1.2
1,827,539	+		GFF1805	0.75	+0.2
1,827,541	+		GFF1805	0.75	-0.2
1,827,541	+		GFF1805	0.75	+0.3
1,827,541	+		GFF1805	0.75	-1.6
1,827,541	+		GFF1805	0.75	-0.5
1,827,541	-		GFF1805	0.75	+0.1
1,827,547	-		GFF1805	0.77	-0.7
1,827,547	-		GFF1805	0.77	-2.1
1,827,547	-		GFF1805	0.77	-1.1
1,827,547	-		GFF1805	0.77	+0.1
1,827,547	-		GFF1805	0.77	+1.0
1,827,547	-		GFF1805	0.77	+0.2
1,827,547	-		GFF1805	0.77	+0.3
1,827,549	-		GFF1805	0.78	-0.3
1,827,549	-		GFF1805	0.78	+0.6
1,827,549	-		GFF1805	0.78	+1.9
1,827,549	-		GFF1805	0.78	-1.8
1,827,549	-		GFF1805	0.78	-0.3
1,827,549	-		GFF1805	0.78	+1.3
1,827,575	+		GFF1805	0.86	-0.1
1,827,576	+		GFF1805	0.87	-1.5
1,827,583	-		GFF1805	0.89	-0.7
1,827,583	-		GFF1805	0.89	-1.2
1,827,586	+				+0.3
1,827,586	+				+0.1
1,827,594	-				+0.5
1,827,596	+				-0.1
1,827,601	+				+0.6
1,827,604	-				+1.1
1,827,604	-				-0.0
1,827,609	-				-2.3
1,827,609	-				-0.6
1,827,609	-				-0.1
1,827,609	-				+0.2
1,827,609	-				-1.3
1,827,609	-				-0.9
1,827,631	+				-2.3
1,827,703	-				-1.7
1,827,703	-				-1.2
1,827,789	-				+0.0
1,827,800	+				+0.3
1,827,808	-				-0.7
1,827,821	-				-1.3
1,827,821	-				+1.9
1,827,834	+		GFF1806	0.11	-0.0
1,827,836	-		GFF1806	0.11	-0.8
1,827,844	-		GFF1806	0.11	-0.1
1,827,844	-		GFF1806	0.11	+0.7
1,827,892	+		GFF1806	0.14	-0.8
1,827,894	+		GFF1806	0.15	+1.4
1,827,908	+		GFF1806	0.15	-0.2
1,827,908	+		GFF1806	0.15	-0.2
1,827,914	+		GFF1806	0.16	+0.2
1,827,916	-		GFF1806	0.16	-1.2
1,827,916	-		GFF1806	0.16	+0.7
1,827,916	-		GFF1806	0.16	-0.3
1,827,916	-		GFF1806	0.16	-2.2
1,827,917	+		GFF1806	0.16	-0.6
1,827,927	+		GFF1806	0.17	-1.5
1,827,930	-		GFF1806	0.17	+0.5
1,827,932	+		GFF1806	0.17	-0.8
1,827,940	-		GFF1806	0.17	-0.9
1,827,940	-		GFF1806	0.17	-1.2
1,827,940	-		GFF1806	0.17	+0.6
1,827,940	-		GFF1806	0.17	-0.3
1,827,963	+		GFF1806	0.19	+0.7
1,827,966	-		GFF1806	0.19	+0.1
1,827,966	-		GFF1806	0.19	-0.4
1,827,971	-		GFF1806	0.19	-1.4
1,827,974	-		GFF1806	0.20	+0.2
1,828,005	+		GFF1806	0.21	-0.4
1,828,009	+		GFF1806	0.22	+1.2
1,828,009	+		GFF1806	0.22	-1.8
1,828,013	-		GFF1806	0.22	-0.2
1,828,014	+		GFF1806	0.22	+0.9
1,828,014	+		GFF1806	0.22	-1.2
1,828,015	+		GFF1806	0.22	-0.5
1,828,017	-		GFF1806	0.22	+0.4
1,828,017	-		GFF1806	0.22	+0.8
1,828,019	+		GFF1806	0.22	-1.1
1,828,019	+		GFF1806	0.22	-0.3
1,828,019	+		GFF1806	0.22	-1.6
1,828,019	+		GFF1806	0.22	-1.1
1,828,019	+		GFF1806	0.22	-0.3
1,828,024	+		GFF1806	0.23	-0.8
1,828,024	+		GFF1806	0.23	-1.1
1,828,024	+		GFF1806	0.23	-2.0
1,828,024	+		GFF1806	0.23	-0.1
1,828,024	+		GFF1806	0.23	-0.3
1,828,024	+		GFF1806	0.23	+0.1
1,828,024	+		GFF1806	0.23	+1.4
1,828,024	+		GFF1806	0.23	+0.1
1,828,024	+		GFF1806	0.23	+0.4
1,828,024	+		GFF1806	0.23	+1.1
1,828,024	+		GFF1806	0.23	+0.2
1,828,024	+		GFF1806	0.23	-1.2
1,828,024	+		GFF1806	0.23	-0.1
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