Strain Fitness in Sphingobium sp. HT1-2 around GFF1766

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,794,002	-		GFF1764	0.72	-2.4
1,794,041	-		GFF1764	0.76	-2.4
1,794,052	-		GFF1764	0.77	-0.2
1,794,282	-				-0.9
1,794,321	-				-1.5
1,794,339	-				-1.3
1,794,347	+				-1.0
1,794,413	+				+0.3
1,794,417	-				-0.4
1,794,418	+				+0.2
1,794,426	-				+0.4
1,794,431	+				-2.1
1,794,431	+				+0.4
1,794,439	-				-1.3
1,794,444	+				-0.3
1,794,444	+				+1.0
1,794,452	-				+0.1
1,794,498	+				-1.8
1,794,498	+				-1.8
1,794,498	+				-1.9
1,794,506	-				-0.8
1,794,506	-				-1.1
1,794,506	-				+0.6
1,794,516	-				-2.2
1,794,567	-		GFF1765	0.17	+0.5
1,794,645	+		GFF1765	0.32	-0.0
1,794,648	-		GFF1765	0.33	-0.4
1,794,662	+		GFF1765	0.36	+2.0
1,794,670	+		GFF1765	0.37	-0.4
1,794,678	+		GFF1765	0.39	-0.4
1,794,678	-		GFF1765	0.39	-1.3
1,794,678	-		GFF1765	0.39	-1.4
1,794,684	-		GFF1765	0.40	-2.0
1,794,742	+		GFF1765	0.51	+0.4
1,794,742	+		GFF1765	0.51	-0.4
1,794,742	+		GFF1765	0.51	+0.9
1,794,742	+		GFF1765	0.51	-1.3
1,794,742	+		GFF1765	0.51	+0.6
1,794,750	-		GFF1765	0.53	-0.7
1,794,750	-		GFF1765	0.53	-0.0
1,794,750	-		GFF1765	0.53	+1.2
1,794,750	-		GFF1765	0.53	-0.7
1,794,771	+		GFF1765	0.57	+1.1
1,794,776	-		GFF1765	0.58	+0.4
1,794,782	+		GFF1765	0.59	+0.4
1,794,782	+		GFF1765	0.59	-1.3
1,794,791	+		GFF1765	0.61	-1.0
1,794,817	+		GFF1765	0.66	-0.3
1,794,820	-		GFF1765	0.67	+0.9
1,794,820	-		GFF1765	0.67	-0.4
1,794,855	+		GFF1765	0.74	+0.9
1,794,863	-		GFF1765	0.76	-1.3
1,794,863	-		GFF1765	0.76	-1.3
1,794,867	+		GFF1765	0.76	-0.2
1,794,867	+		GFF1765	0.76	-0.2
1,794,867	+		GFF1765	0.76	-0.5
1,794,875	-		GFF1765	0.78	-1.2
1,794,877	+		GFF1765	0.78	-0.7
1,794,880	-		GFF1765	0.79	-1.0
1,794,895	-		GFF1765	0.82	-0.6
1,794,914	-		GFF1765	0.86	-1.0
1,794,949	-				+0.3
1,794,949	-				+0.0
1,794,949	-				-1.1
1,794,977	-				-1.5
1,794,986	+				-0.2
1,794,993	+				+0.1
1,794,996	+				+0.6
1,794,996	+				-1.3
1,794,996	+				+0.0
1,794,996	+				+2.1
1,795,004	-				-1.6
1,795,004	-				-0.3
1,795,026	+				-1.1
1,795,036	-				+0.3
1,795,041	+				+0.9
1,795,048	+				-0.3
1,795,057	+				-2.0
1,795,057	+				-0.1
1,795,057	+				-0.1
1,795,059	+				+0.7
1,795,059	+				-1.7
1,795,059	-				+0.4
1,795,065	-				+0.2
1,795,065	-				+0.3
1,795,065	-				-0.5
1,795,065	-				-0.9
1,795,067	-				+0.4
1,795,067	-				+0.8
1,795,067	-				-1.0
1,795,105	+				+0.4
1,795,105	+				+1.7
1,795,105	+				-0.3
1,795,107	+				+0.5
1,795,107	+				+0.3
1,795,113	+				-1.4
1,795,113	-				-0.9
1,795,113	-				-0.1
1,795,113	-				-0.8
1,795,118	+				-1.0
1,795,118	+				-2.0
1,795,120	-				+0.6
1,795,121	-				-1.3
1,795,121	-				-0.5
1,795,125	+				-0.2
1,795,140	+				-1.1
1,795,168	-				+0.5
1,795,174	+				-0.1
1,795,182	-				-1.3
1,795,182	-				-0.3
1,795,210	+				-2.3
1,795,215	+				-1.7
1,795,215	+				+0.3
1,795,249	+		GFF1766	0.11	+0.3
1,795,257	-		GFF1766	0.12	+0.8
1,795,269	+		GFF1766	0.12	+0.1
1,795,278	-		GFF1766	0.13	+0.6
1,795,329	-		GFF1766	0.15	-0.7
1,795,342	+		GFF1766	0.16	-1.5
1,795,342	-		GFF1766	0.16	+0.6
1,795,345	-		GFF1766	0.16	-2.1
1,795,357	+		GFF1766	0.16	-0.4
1,795,385	-		GFF1766	0.18	+0.0
1,795,396	-		GFF1766	0.18	+0.0
1,795,396	-		GFF1766	0.18	-1.1
1,795,452	+		GFF1766	0.21	-1.2
1,795,452	+		GFF1766	0.21	-1.4
1,795,455	-		GFF1766	0.21	+0.6
1,795,487	-		GFF1766	0.22	+0.9
1,795,489	-		GFF1766	0.22	-0.1
1,795,491	+		GFF1766	0.22	+0.1
1,795,491	+		GFF1766	0.22	+0.6
1,795,496	+		GFF1766	0.23	+0.5
1,795,499	-		GFF1766	0.23	+0.5
1,795,501	+		GFF1766	0.23	-0.7
1,795,509	-		GFF1766	0.23	+0.6
1,795,509	-		GFF1766	0.23	+1.0
1,795,509	-		GFF1766	0.23	+0.6
1,795,516	+		GFF1766	0.24	+0.2
1,795,524	-		GFF1766	0.24	-2.0
1,795,550	-		GFF1766	0.25	+0.6
1,795,556	+		GFF1766	0.25	-0.5
1,795,556	+		GFF1766	0.25	-0.8
1,795,556	+		GFF1766	0.25	+0.3
1,795,556	+		GFF1766	0.25	-0.6
1,795,556	+		GFF1766	0.25	+0.6
1,795,556	+		GFF1766	0.25	-0.1
1,795,556	+		GFF1766	0.25	+0.8
1,795,556	+		GFF1766	0.25	-1.0
1,795,556	+		GFF1766	0.25	-0.6
1,795,561	+		GFF1766	0.26	-0.9
1,795,561	+		GFF1766	0.26	+0.0
1,795,564	+		GFF1766	0.26	-1.8
1,795,564	-		GFF1766	0.26	+0.5
1,795,564	-		GFF1766	0.26	-0.3
1,795,564	-		GFF1766	0.26	+1.1
1,795,564	-		GFF1766	0.26	-0.8
1,795,564	-		GFF1766	0.26	-1.5
1,795,564	-		GFF1766	0.26	+0.1
1,795,564	-		GFF1766	0.26	+0.1
1,795,564	-		GFF1766	0.26	-0.6
1,795,564	-		GFF1766	0.26	-0.5
1,795,569	-		GFF1766	0.26	-0.2
1,795,569	-		GFF1766	0.26	-0.6
1,795,579	+		GFF1766	0.26	-1.5
1,795,583	-		GFF1766	0.27	-0.6
1,795,583	-		GFF1766	0.27	-0.5
1,795,585	+		GFF1766	0.27	+0.2
1,795,587	-		GFF1766	0.27	-1.5
1,795,593	-		GFF1766	0.27	-1.4
1,795,593	-		GFF1766	0.27	-0.1
1,795,596	+		GFF1766	0.27	-1.5
1,795,600	+		GFF1766	0.27	-1.4
1,795,604	-		GFF1766	0.28	-1.1
1,795,606	+		GFF1766	0.28	-1.2
1,795,606	+		GFF1766	0.28	+1.0
1,795,606	+		GFF1766	0.28	+0.5
1,795,614	-		GFF1766	0.28	+1.1
1,795,632	+		GFF1766	0.29	-1.6
1,795,646	-		GFF1766	0.30	+0.2
1,795,646	-		GFF1766	0.30	-0.6
1,795,650	+		GFF1766	0.30	+0.9
1,795,651	-		GFF1766	0.30	-0.5
1,795,656	-		GFF1766	0.30	-1.3
1,795,658	-		GFF1766	0.30	+0.3
1,795,658	-		GFF1766	0.30	-0.7
1,795,675	+		GFF1766	0.31	-0.4
1,795,682	+		GFF1766	0.31	-0.8
1,795,683	+		GFF1766	0.31	-1.9
1,795,690	-		GFF1766	0.32	+0.4
1,795,693	-		GFF1766	0.32	-1.3
1,795,705	-		GFF1766	0.32	+0.7
1,795,707	+		GFF1766	0.32	+0.0
1,795,707	+		GFF1766	0.32	-1.4
1,795,715	-		GFF1766	0.33	+0.9
1,795,715	-		GFF1766	0.33	+0.3
1,795,728	+		GFF1766	0.33	-1.8
1,795,736	-		GFF1766	0.34	-0.4
1,795,736	-		GFF1766	0.34	-2.1
1,795,736	-		GFF1766	0.34	-1.7
1,795,741	-		GFF1766	0.34	-0.7
1,795,759	-		GFF1766	0.35	-1.1
1,795,767	-		GFF1766	0.35	-2.0
1,795,774	+		GFF1766	0.35	-0.7
1,795,790	-		GFF1766	0.36	+0.4
1,795,796	-		GFF1766	0.36	-1.2
1,795,807	+		GFF1766	0.37	-0.7
1,795,807	+		GFF1766	0.37	-0.2
1,795,813	+		GFF1766	0.37	+0.8
1,795,815	-		GFF1766	0.37	-1.2
1,795,815	-		GFF1766	0.37	-1.7
1,795,817	+		GFF1766	0.37	+0.1
1,795,820	-		GFF1766	0.37	-0.5
1,795,820	-		GFF1766	0.37	+0.5
1,795,822	+		GFF1766	0.38	-0.2
1,795,823	+		GFF1766	0.38	+0.6
1,795,825	-		GFF1766	0.38	-1.7
1,795,825	-		GFF1766	0.38	-1.4
1,795,836	-		GFF1766	0.38	-0.8
1,795,860	-		GFF1766	0.39	+1.0
1,795,860	-		GFF1766	0.39	+0.5
1,795,875	-		GFF1766	0.40	-1.1
1,795,882	+		GFF1766	0.40	+0.0
1,795,891	+		GFF1766	0.41	-1.0
1,795,894	-		GFF1766	0.41	-1.1
1,795,908	-		GFF1766	0.41	-2.5
1,795,909	+		GFF1766	0.42	-1.8
1,795,909	+		GFF1766	0.42	-1.3
1,795,910	+		GFF1766	0.42	+0.7
1,795,910	+		GFF1766	0.42	+0.3
1,795,913	-		GFF1766	0.42	+0.9
1,795,917	-		GFF1766	0.42	+1.5
1,795,943	+		GFF1766	0.43	+0.3
1,795,954	+		GFF1766	0.44	-1.0
1,795,962	-		GFF1766	0.44	-0.3
1,795,962	-		GFF1766	0.44	-1.1
1,795,964	+		GFF1766	0.44	-2.3
1,795,969	+		GFF1766	0.44	-1.2
1,795,972	-		GFF1766	0.44	+0.0
1,795,974	+		GFF1766	0.45	+1.5
1,795,977	-		GFF1766	0.45	-1.3
1,795,977	-		GFF1766	0.45	-1.1
1,795,977	-		GFF1766	0.45	-1.6
1,796,002	+		GFF1766	0.46	-1.3
1,796,005	-		GFF1766	0.46	-1.4
1,796,005	-		GFF1766	0.46	-0.5
1,796,033	-		GFF1766	0.47	-1.4
1,796,033	-		GFF1766	0.47	+1.1
1,796,051	-		GFF1766	0.48	-1.3
1,796,067	-		GFF1766	0.49	-1.4
1,796,079	-		GFF1766	0.49	-0.2
1,796,089	+		GFF1766	0.50	-0.2
1,796,101	+		GFF1766	0.50	+1.5
1,796,122	+		GFF1766	0.51	-0.4
1,796,135	-		GFF1766	0.52	+0.9
1,796,139	-		GFF1766	0.52	-0.2
1,796,142	+		GFF1766	0.52	-0.8
1,796,142	+		GFF1766	0.52	+0.6
1,796,150	-		GFF1766	0.53	-1.2
1,796,152	+		GFF1766	0.53	-0.5
1,796,153	+		GFF1766	0.53	-0.1
1,796,190	-		GFF1766	0.54	-2.3
1,796,192	+		GFF1766	0.54	-0.2
1,796,195	-		GFF1766	0.55	+0.3
1,796,197	+		GFF1766	0.55	-0.5
1,796,200	-		GFF1766	0.55	+0.3
1,796,209	+		GFF1766	0.55	-0.2
1,796,217	-		GFF1766	0.56	-2.8
1,796,235	+		GFF1766	0.56	+1.1
1,796,243	-		GFF1766	0.57	-2.6
1,796,245	+		GFF1766	0.57	-2.0
1,796,259	+		GFF1766	0.58	+0.7
1,796,263	-		GFF1766	0.58	+0.2
1,796,292	-		GFF1766	0.59	+0.3
1,796,301	+		GFF1766	0.59	-0.7
1,796,303	-		GFF1766	0.60	+1.0
1,796,309	-		GFF1766	0.60	-0.4
1,796,321	+		GFF1766	0.60	-0.5
1,796,321	+		GFF1766	0.60	-1.6
1,796,321	+		GFF1766	0.60	-0.5
1,796,321	+		GFF1766	0.60	+1.0
1,796,321	+		GFF1766	0.60	-0.6
1,796,321	+		GFF1766	0.60	-0.7
1,796,329	-		GFF1766	0.61	-1.9
1,796,329	-		GFF1766	0.61	+0.2
1,796,329	-		GFF1766	0.61	+1.2
1,796,329	-		GFF1766	0.61	-0.1
1,796,329	-		GFF1766	0.61	-1.6
1,796,352	-		GFF1766	0.62	-0.1
1,796,381	-		GFF1766	0.63	-0.7
1,796,397	+		GFF1766	0.64	-0.9
1,796,400	-		GFF1766	0.64	-0.8
1,796,421	+		GFF1766	0.65	-0.2
1,796,442	+		GFF1766	0.66	-0.7
1,796,447	+		GFF1766	0.66	-0.3
1,796,452	+		GFF1766	0.66	-1.1
1,796,452	+		GFF1766	0.66	+1.1
1,796,452	+		GFF1766	0.66	-0.1
1,796,452	+		GFF1766	0.66	+1.5
1,796,452	+		GFF1766	0.66	-0.4
1,796,452	+		GFF1766	0.66	-1.2
1,796,452	+		GFF1766	0.66	-0.4
1,796,458	+		GFF1766	0.67	-0.1
1,796,460	-		GFF1766	0.67	-0.8
1,796,460	-		GFF1766	0.67	-0.3
1,796,460	-		GFF1766	0.67	-0.9
1,796,460	-		GFF1766	0.67	-3.4
1,796,460	-		GFF1766	0.67	-1.0
1,796,466	+		GFF1766	0.67	-0.7
1,796,466	+		GFF1766	0.67	-0.0
1,796,468	-		GFF1766	0.67	-1.7
1,796,474	-		GFF1766	0.67	-0.6
1,796,487	+		GFF1766	0.68	-0.4
1,796,492	+		GFF1766	0.68	-1.6
1,796,492	+		GFF1766	0.68	+0.5
1,796,492	+		GFF1766	0.68	-1.9
1,796,492	+		GFF1766	0.68	-0.7
1,796,492	+		GFF1766	0.68	-0.1
1,796,497	+		GFF1766	0.68	-0.8
1,796,497	+		GFF1766	0.68	-0.4
1,796,499	-		GFF1766	0.68	-0.5
1,796,500	-		GFF1766	0.68	-0.4
1,796,500	-		GFF1766	0.68	-1.6
1,796,500	-		GFF1766	0.68	-0.4
1,796,500	-		GFF1766	0.68	-0.7
1,796,500	-		GFF1766	0.68	-1.6
1,796,519	+		GFF1766	0.69	-0.3
1,796,520	+		GFF1766	0.69	-0.8
1,796,520	+		GFF1766	0.69	-1.8
1,796,520	+		GFF1766	0.69	-0.1
1,796,528	-		GFF1766	0.70	-0.1
1,796,528	-		GFF1766	0.70	+0.7
1,796,533	-		GFF1766	0.70	-1.8
1,796,549	+		GFF1766	0.71	-1.3
1,796,549	+		GFF1766	0.71	+0.9
1,796,557	-		GFF1766	0.71	-1.8
1,796,557	-		GFF1766	0.71	-1.5
1,796,562	-		GFF1766	0.71	-0.6
1,796,562	-		GFF1766	0.71	+0.7
1,796,593	+		GFF1766	0.73	-1.5
1,796,598	+		GFF1766	0.73	-0.1
1,796,622	-		GFF1766	0.74	-0.3
1,796,629	-		GFF1766	0.74	-0.1
1,796,630	+		GFF1766	0.74	+0.5
1,796,655	-		GFF1766	0.76	+0.6
1,796,656	+		GFF1766	0.76	-1.7
1,796,662	-		GFF1766	0.76	+0.8
1,796,674	+		GFF1766	0.76	-0.7
1,796,674	-		GFF1766	0.76	+0.9
1,796,674	-		GFF1766	0.76	-0.7
1,796,677	+		GFF1766	0.77	+0.1
1,796,709	+		GFF1766	0.78	+0.6
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