Strain Fitness in Sphingobium sp. HT1-2 around GFF1750

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,776,713	-		GFF1749	0.48	+0.1
1,776,719	+		GFF1749	0.49	+0.8
1,776,734	+		GFF1749	0.50	-0.3
1,776,734	+		GFF1749	0.50	+0.0
1,776,742	-		GFF1749	0.50	-0.9
1,776,776	+		GFF1749	0.52	+1.0
1,776,828	-		GFF1749	0.55	+1.9
1,776,828	-		GFF1749	0.55	-0.5
1,776,839	+		GFF1749	0.56	+0.9
1,776,865	+		GFF1749	0.57	-0.3
1,776,872	+		GFF1749	0.58	+1.9
1,776,872	+		GFF1749	0.58	+0.3
1,776,880	-		GFF1749	0.58	-1.3
1,776,880	-		GFF1749	0.58	-0.5
1,776,880	-		GFF1749	0.58	-0.2
1,776,885	-		GFF1749	0.58	-0.5
1,776,890	-		GFF1749	0.59	+1.6
1,776,890	-		GFF1749	0.59	-0.1
1,776,929	+		GFF1749	0.61	+1.0
1,776,932	-		GFF1749	0.61	-0.5
1,776,938	-		GFF1749	0.61	+1.2
1,776,942	-		GFF1749	0.62	+0.6
1,776,966	+		GFF1749	0.63	-1.8
1,777,021	+		GFF1749	0.66	+1.7
1,777,044	+		GFF1749	0.67	-0.0
1,777,052	-		GFF1749	0.68	-0.3
1,777,052	-		GFF1749	0.68	+0.8
1,777,068	+		GFF1749	0.69	-1.8
1,777,073	+		GFF1749	0.69	+1.6
1,777,073	+		GFF1749	0.69	+1.4
1,777,073	+		GFF1749	0.69	+0.1
1,777,073	+		GFF1749	0.69	-0.7
1,777,073	+		GFF1749	0.69	-0.3
1,777,073	+		GFF1749	0.69	+0.7
1,777,073	+		GFF1749	0.69	-0.8
1,777,079	+		GFF1749	0.69	-1.7
1,777,079	+		GFF1749	0.69	-1.4
1,777,079	+		GFF1749	0.69	+0.7
1,777,079	+		GFF1749	0.69	+0.5
1,777,079	+		GFF1749	0.69	+0.5
1,777,081	-		GFF1749	0.70	+1.1
1,777,081	-		GFF1749	0.70	+0.6
1,777,084	+		GFF1749	0.70	+0.5
1,777,087	-		GFF1749	0.70	-0.5
1,777,087	-		GFF1749	0.70	-0.1
1,777,087	-		GFF1749	0.70	+0.8
1,777,087	-		GFF1749	0.70	-0.1
1,777,087	-		GFF1749	0.70	-1.2
1,777,087	-		GFF1749	0.70	+0.2
1,777,089	+		GFF1749	0.70	-0.5
1,777,089	+		GFF1749	0.70	+0.4
1,777,097	-		GFF1749	0.71	-0.1
1,777,097	-		GFF1749	0.71	-0.1
1,777,097	-		GFF1749	0.71	+0.8
1,777,097	-		GFF1749	0.71	-2.4
1,777,104	-		GFF1749	0.71	-0.5
1,777,104	-		GFF1749	0.71	-0.2
1,777,111	+		GFF1749	0.71	-1.4
1,777,135	+		GFF1749	0.73	-1.7
1,777,150	+		GFF1749	0.74	-0.9
1,777,169	+		GFF1749	0.75	-1.1
1,777,215	+		GFF1749	0.77	-0.7
1,777,222	+		GFF1749	0.78	-1.2
1,777,225	-		GFF1749	0.78	-2.3
1,777,227	+		GFF1749	0.78	-0.8
1,777,234	+		GFF1749	0.78	+0.6
1,777,239	+		GFF1749	0.79	+0.1
1,777,242	-		GFF1749	0.79	+0.1
1,777,247	-		GFF1749	0.79	-0.8
1,777,247	-		GFF1749	0.79	+0.6
1,777,247	-		GFF1749	0.79	+0.1
1,777,247	-		GFF1749	0.79	+1.0
1,777,247	-		GFF1749	0.79	+0.3
1,777,247	-		GFF1749	0.79	+0.6
1,777,280	-		GFF1749	0.81	-0.4
1,777,285	+		GFF1749	0.81	-1.0
1,777,290	+		GFF1749	0.82	-1.2
1,777,292	+		GFF1749	0.82	+0.3
1,777,292	-		GFF1749	0.82	+0.7
1,777,297	+		GFF1749	0.82	-0.4
1,777,298	-		GFF1749	0.82	+0.3
1,777,305	-		GFF1749	0.82	+1.3
1,777,317	+		GFF1749	0.83	+1.3
1,777,317	+		GFF1749	0.83	-1.1
1,777,325	-		GFF1749	0.84	+0.6
1,777,359	+		GFF1749	0.86	+0.5
1,777,364	+		GFF1749	0.86	+0.5
1,777,372	-		GFF1749	0.86	-0.2
1,777,374	+		GFF1749	0.86	-0.2
1,777,374	+		GFF1749	0.86	+0.7
1,777,374	+		GFF1749	0.86	-2.5
1,777,377	-		GFF1749	0.87	+0.0
1,777,377	-		GFF1749	0.87	-0.1
1,777,382	-		GFF1749	0.87	-1.5
1,777,382	-		GFF1749	0.87	+0.1
1,777,382	-		GFF1749	0.87	-0.6
1,777,390	+		GFF1749	0.87	-1.9
1,777,393	-		GFF1749	0.88	+0.2
1,777,433	+		GFF1749	0.90	+1.4
1,777,441	+				+0.2
1,777,463	+				-0.1
1,777,471	+				-0.1
1,777,471	-				+0.9
1,777,478	+				-1.4
1,777,478	+				-0.7
1,777,486	-				+0.2
1,777,493	+				-1.0
1,777,493	+				-1.9
1,777,501	-				-1.2
1,777,501	-				+1.4
1,777,501	-				+1.5
1,777,511	-				-0.8
1,777,517	+				-1.2
1,777,517	+				-0.5
1,777,518	-				-1.6
1,777,525	-				+0.4
1,777,527	+				+1.3
1,777,543	+				-1.3
1,777,549	+				-0.0
1,777,549	+				+0.5
1,777,549	+				-0.8
1,777,549	+				+0.4
1,777,549	+				+0.8
1,777,549	+				+1.5
1,777,549	+				-0.6
1,777,549	+				+0.9
1,777,549	+				-0.7
1,777,556	+				+0.5
1,777,557	-				+0.7
1,777,557	-				+1.6
1,777,557	-				-1.7
1,777,557	-				+1.4
1,777,557	-				-0.5
1,777,557	-				-0.9
1,777,557	-				-0.7
1,777,557	-				+0.3
1,777,557	-				+0.3
1,777,580	+				-1.1
1,777,590	+				+0.1
1,777,590	+				-0.3
1,777,593	+				+0.1
1,777,593	+				-0.5
1,777,593	+				+1.4
1,777,596	-				-0.2
1,777,598	-				+0.2
1,777,598	-				-0.7
1,777,600	+				-0.8
1,777,601	-				-1.0
1,777,606	-				+0.7
1,777,606	-				-0.9
1,777,608	-				+0.6
1,777,616	+				+0.0
1,777,651	+				-2.5
1,777,677	+				-1.9
1,777,707	+				-0.5
1,777,710	+				-0.7
1,777,713	-				+1.2
1,777,718	-				-1.8
1,777,718	-				-0.2
1,777,718	-				+0.9
1,777,718	-				+0.5
1,777,718	-				-0.5
1,777,755	+				-0.8
1,777,772	-		GFF1750	0.10	-0.9
1,777,800	+		GFF1750	0.15	-0.3
1,777,808	-		GFF1750	0.16	-0.4
1,777,808	-		GFF1750	0.16	+0.6
1,777,814	+		GFF1750	0.17	+1.7
1,777,814	+		GFF1750	0.17	-0.3
1,777,818	-		GFF1750	0.18	-0.3
1,777,822	+		GFF1750	0.19	-0.0
1,777,822	+		GFF1750	0.19	-0.1
1,777,822	+		GFF1750	0.19	-1.0
1,777,849	-		GFF1750	0.23	-0.1
1,777,866	+		GFF1750	0.26	+0.1
1,777,920	-		GFF1750	0.35	-0.3
1,777,930	-		GFF1750	0.37	-1.2
1,777,934	+		GFF1750	0.37	-0.6
1,777,942	-		GFF1750	0.39	-2.1
1,777,952	-		GFF1750	0.40	-0.2
1,778,008	-		GFF1750	0.50	-1.9
1,778,037	+		GFF1750	0.55	-1.0
1,778,037	+		GFF1750	0.55	+0.9
1,778,048	+		GFF1750	0.57	-1.0
1,778,087	-		GFF1750	0.63	-1.0
1,778,087	-		GFF1750	0.63	-0.2
1,778,094	+		GFF1750	0.64	+0.7
1,778,094	+		GFF1750	0.64	-0.7
1,778,094	+		GFF1750	0.64	+1.7
1,778,102	-		GFF1750	0.66	+0.9
1,778,102	-		GFF1750	0.66	-1.0
1,778,102	-		GFF1750	0.66	+0.2
1,778,102	-		GFF1750	0.66	-0.6
1,778,104	+		GFF1750	0.66	+0.7
1,778,104	-		GFF1750	0.66	-0.6
1,778,121	+		GFF1750	0.69	+0.5
1,778,138	+		GFF1750	0.72	+0.5
1,778,138	-		GFF1750	0.72	+0.2
1,778,144	+		GFF1750	0.73	-1.5
1,778,153	+		GFF1750	0.74	+1.8
1,778,160	+		GFF1750	0.75	+0.7
1,778,160	+		GFF1750	0.75	-1.1
1,778,160	+		GFF1750	0.75	-1.4
1,778,161	-		GFF1750	0.76	-1.8
1,778,161	-		GFF1750	0.76	-1.1
1,778,161	-		GFF1750	0.76	+1.9
1,778,161	-		GFF1750	0.76	+0.6
1,778,161	-		GFF1750	0.76	-2.5
1,778,168	-		GFF1750	0.77	-1.6
1,778,168	-		GFF1750	0.77	+0.7
1,778,206	-		GFF1750	0.83	-0.3
1,778,207	-		GFF1750	0.83	-1.0
1,778,237	-		GFF1750	0.88	-0.2
1,778,255	+				+0.2
1,778,263	-				+0.3
1,778,263	-				+1.2
1,778,270	-				+0.0
1,778,313	+				+0.2
1,778,313	+				-2.5
1,778,315	+				+0.3
1,778,318	+				-0.3
1,778,321	-				-1.2
1,778,323	+				+0.4
1,778,323	+				+0.7
1,778,323	+				+0.4
1,778,323	+				+1.0
1,778,323	+				-0.7
1,778,323	+				-0.2
1,778,323	+				-1.0
1,778,323	+				-2.3
1,778,326	-				+1.4
1,778,328	+				-0.4
1,778,331	-				-1.9
1,778,331	-				+0.5
1,778,331	-				-1.2
1,778,331	-				+0.3
1,778,331	-				-0.5
1,778,331	-				-0.2
1,778,336	+				-1.3
1,778,336	-				+0.7
1,778,337	+				-1.0
1,778,339	-				+0.2
1,778,339	-				-0.6
1,778,345	-				-0.6
1,778,367	+				+0.5
1,778,367	+				-0.9
1,778,367	+				+0.9
1,778,370	-				-0.8
1,778,370	-				+0.1
1,778,375	-				-0.4
1,778,375	-				-1.1
1,778,375	-				-0.6
1,778,375	-				-1.0
1,778,388	+				-0.8
1,778,393	+				-0.6
1,778,393	+				-0.2
1,778,393	+				-0.6
1,778,411	+				-1.0
1,778,419	-				-0.1
1,778,419	-				+0.1
1,778,460	-		GFF1751	0.10	-2.6
1,778,462	+		GFF1751	0.11	+0.5
1,778,475	-		GFF1751	0.12	-1.2
1,778,475	-		GFF1751	0.12	+0.3
1,778,475	-		GFF1751	0.12	+0.8
1,778,485	-		GFF1751	0.13	-0.2
1,778,490	-		GFF1751	0.14	+0.3
1,778,525	+		GFF1751	0.17	-0.6
1,778,548	+		GFF1751	0.20	+0.1
1,778,556	-		GFF1751	0.21	-0.2
1,778,581	+		GFF1751	0.23	-1.1
1,778,589	-		GFF1751	0.24	+0.2
1,778,595	+		GFF1751	0.25	-0.3
1,778,628	+		GFF1751	0.28	+0.7
1,778,628	+		GFF1751	0.28	-0.2
1,778,628	+		GFF1751	0.28	-2.7
1,778,628	+		GFF1751	0.28	+0.1
1,778,628	+		GFF1751	0.28	+0.2
1,778,628	+		GFF1751	0.28	-0.7
1,778,636	-		GFF1751	0.29	-0.5
1,778,636	-		GFF1751	0.29	-1.1
1,778,636	-		GFF1751	0.29	-0.4
1,778,636	-		GFF1751	0.29	-1.5
1,778,641	+		GFF1751	0.30	-2.2
1,778,649	-		GFF1751	0.31	-0.4
1,778,665	+		GFF1751	0.32	-0.3
1,778,672	-		GFF1751	0.33	+0.5
1,778,714	-		GFF1751	0.38	-0.9
1,778,716	+		GFF1751	0.38	-0.2
1,778,716	+		GFF1751	0.38	-1.2
1,778,724	-		GFF1751	0.39	-0.1
1,778,724	-		GFF1751	0.39	+0.2
1,778,724	-		GFF1751	0.39	-1.1
1,778,736	-		GFF1751	0.40	-1.9
1,778,743	+		GFF1751	0.41	-1.4
1,778,743	+		GFF1751	0.41	-0.6
1,778,751	-		GFF1751	0.42	-1.5
1,778,751	-		GFF1751	0.42	-0.4
1,778,751	-		GFF1751	0.42	-0.2
1,778,751	-		GFF1751	0.42	-0.7
1,778,751	-		GFF1751	0.42	+1.0
1,778,772	+		GFF1751	0.44	-1.0
1,778,775	-		GFF1751	0.44	-1.5
1,778,780	-		GFF1751	0.45	-0.0
1,778,780	-		GFF1751	0.45	-0.2
1,778,804	-		GFF1751	0.47	+0.3
1,778,829	-		GFF1751	0.50	+0.1
1,778,830	+		GFF1751	0.50	-0.3
1,778,830	+		GFF1751	0.50	+0.0
1,778,877	+		GFF1751	0.55	+0.2
1,778,906	+		GFF1751	0.58	-0.2
1,778,906	+		GFF1751	0.58	+1.1
1,778,906	+		GFF1751	0.58	+0.1
1,778,930	+		GFF1751	0.61	+0.2
1,778,938	-		GFF1751	0.62	+0.3
1,778,951	+		GFF1751	0.63	+0.7
1,778,959	-		GFF1751	0.64	-2.1
1,778,960	-		GFF1751	0.64	+0.7
1,778,960	-		GFF1751	0.64	-0.4
1,778,990	+		GFF1751	0.68	+0.9
1,778,998	-		GFF1751	0.68	-0.1
1,779,005	+		GFF1751	0.69	-0.3
1,779,009	+		GFF1751	0.70	+0.6
1,779,009	+		GFF1751	0.70	+0.9
1,779,009	+		GFF1751	0.70	-0.2
1,779,017	-		GFF1751	0.70	-2.3
1,779,017	-		GFF1751	0.70	-1.0
1,779,017	-		GFF1751	0.70	+0.3
1,779,035	+		GFF1751	0.72	+0.4
1,779,035	+		GFF1751	0.72	+1.2
1,779,035	+		GFF1751	0.72	-0.5
1,779,037	-		GFF1751	0.73	+0.3
1,779,037	-		GFF1751	0.73	+0.8
1,779,043	-		GFF1751	0.73	+1.1
1,779,068	+		GFF1751	0.76	+0.3
1,779,076	-		GFF1751	0.77	+0.5
1,779,097	+		GFF1751	0.79	+1.0
1,779,097	+		GFF1751	0.79	-0.5
1,779,099	-		GFF1751	0.79	+0.5
1,779,102	+		GFF1751	0.80	+0.5
1,779,105	-		GFF1751	0.80	-0.9
1,779,105	-		GFF1751	0.80	+0.5
1,779,107	+		GFF1751	0.80	+0.8
1,779,110	-		GFF1751	0.80	+0.9
1,779,115	-		GFF1751	0.81	-0.1
1,779,115	-		GFF1751	0.81	-0.4
1,779,115	-		GFF1751	0.81	-2.1
1,779,117	+		GFF1751	0.81	+0.1
1,779,117	+		GFF1751	0.81	-0.5
1,779,117	+		GFF1751	0.81	-1.1
1,779,117	-		GFF1751	0.81	-2.1
1,779,122	+		GFF1751	0.82	-0.6
1,779,122	+		GFF1751	0.82	+0.2
1,779,125	-		GFF1751	0.82	-0.3
1,779,141	+		GFF1751	0.84	-2.1
1,779,149	-		GFF1751	0.85	-0.5
1,779,160	-		GFF1751	0.86	+0.0
1,779,160	-		GFF1751	0.86	-2.8
1,779,160	-		GFF1751	0.86	+0.3
1,779,184	+		GFF1751	0.88	+0.2
1,779,184	+		GFF1751	0.88	-0.2
1,779,186	+		GFF1751	0.89	-1.2
1,779,186	+		GFF1751	0.89	+0.1
1,779,186	+		GFF1751	0.89	+0.6
1,779,186	+		GFF1751	0.89	+0.9
1,779,186	+		GFF1751	0.89	-0.5
1,779,192	-		GFF1751	0.89	-1.3
1,779,194	-		GFF1751	0.90	+1.2
1,779,194	-		GFF1751	0.90	-0.2
1,779,194	-		GFF1751	0.90	-0.2
1,779,194	-		GFF1751	0.90	-0.1
1,779,194	-		GFF1751	0.90	+0.7
1,779,194	-		GFF1751	0.90	-0.5
1,779,202	-				+0.2
1,779,297	-				+1.5
1,779,301	-				-0.1
1,779,303	+				-1.1
1,779,303	+				+1.2
1,779,303	+				-1.2
1,779,303	+				-0.6