Strain Fitness in Sphingobium sp. HT1-2 around GFF1703

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,728,143	-				-0.2
1,728,149	+				+0.5
1,728,153	-				-0.7
1,728,157	-				-2.4
1,728,183	+		GFF1701	0.21	-2.3
1,728,190	-		GFF1701	0.24	-0.4
1,728,190	-		GFF1701	0.24	-0.3
1,728,190	-		GFF1701	0.24	+0.0
1,728,191	-		GFF1701	0.25	-0.5
1,728,228	+		GFF1701	0.42	+0.5
1,728,236	-		GFF1701	0.45	-1.5
1,728,251	-		GFF1701	0.52	-1.7
1,728,251	-		GFF1701	0.52	-0.2
1,728,255	+		GFF1701	0.54	+1.3
1,728,259	+		GFF1701	0.56	+1.9
1,728,263	-		GFF1701	0.58	-0.7
1,728,269	+		GFF1701	0.61	-0.4
1,728,269	+		GFF1701	0.61	-1.0
1,728,286	-		GFF1701	0.69	-0.8
1,728,286	-		GFF1701	0.69	+0.2
1,728,297	-		GFF1701	0.74	+0.6
1,728,303	-		GFF1701	0.76	-1.7
1,728,303	-		GFF1701	0.76	+0.8
1,728,303	-		GFF1701	0.76	-0.3
1,728,303	-		GFF1701	0.76	-0.7
1,728,305	+		GFF1701	0.77	+0.4
1,728,314	+		GFF1701	0.81	-0.4
1,728,365	-				-0.2
1,728,384	+				+0.9
1,728,394	+				-0.3
1,728,402	-				+1.0
1,728,404	+				-2.0
1,728,404	+				-1.7
1,728,404	+				-1.7
1,728,436	+				+0.9
1,728,436	+				-0.6
1,728,445	-				-1.6
1,728,455	+				+1.8
1,728,457	+				-1.1
1,728,486	+		GFF1702	0.13	+0.0
1,728,486	+		GFF1702	0.13	+0.1
1,728,495	+		GFF1702	0.14	-0.9
1,728,509	+		GFF1702	0.16	+1.1
1,728,520	+		GFF1702	0.18	+1.0
1,728,550	+		GFF1702	0.22	-2.4
1,728,557	-		GFF1702	0.23	-0.4
1,728,565	+		GFF1702	0.24	-0.4
1,728,588	+		GFF1702	0.28	-1.5
1,728,589	+		GFF1702	0.28	+0.1
1,728,589	+		GFF1702	0.28	-0.3
1,728,589	+		GFF1702	0.28	+0.5
1,728,589	+		GFF1702	0.28	+0.9
1,728,589	+		GFF1702	0.28	+0.6
1,728,589	+		GFF1702	0.28	+0.1
1,728,596	-		GFF1702	0.29	+0.1
1,728,596	-		GFF1702	0.29	-0.2
1,728,597	-		GFF1702	0.29	-0.3
1,728,597	-		GFF1702	0.29	-1.5
1,728,597	-		GFF1702	0.29	-0.2
1,728,607	+		GFF1702	0.30	-0.9
1,728,630	+		GFF1702	0.34	+0.1
1,728,644	-		GFF1702	0.36	-0.3
1,728,711	-		GFF1702	0.46	-1.2
1,728,711	-		GFF1702	0.46	-0.1
1,728,722	+		GFF1702	0.47	-0.0
1,728,722	+		GFF1702	0.47	+0.0
1,728,730	-		GFF1702	0.49	+1.4
1,728,766	-		GFF1702	0.54	+0.7
1,728,773	-		GFF1702	0.55	-0.8
1,728,775	+		GFF1702	0.55	+0.9
1,728,775	+		GFF1702	0.55	+0.8
1,728,775	+		GFF1702	0.55	-1.8
1,728,775	+		GFF1702	0.55	-1.2
1,728,775	+		GFF1702	0.55	-1.4
1,728,775	+		GFF1702	0.55	+1.8
1,728,783	-		GFF1702	0.56	+1.1
1,728,783	-		GFF1702	0.56	+0.4
1,728,783	-		GFF1702	0.56	-0.2
1,728,783	-		GFF1702	0.56	-0.4
1,728,802	-		GFF1702	0.59	+0.0
1,728,803	-		GFF1702	0.59	+0.6
1,728,818	-		GFF1702	0.62	+0.3
1,728,819	-		GFF1702	0.62	-1.4
1,728,831	-		GFF1702	0.63	+0.4
1,728,838	+		GFF1702	0.64	+0.1
1,728,868	+		GFF1702	0.69	+0.8
1,728,868	+		GFF1702	0.69	+1.3
1,728,889	-		GFF1702	0.72	+0.3
1,728,912	-		GFF1702	0.75	+0.1
1,728,922	+		GFF1702	0.77	-0.6
1,728,930	-		GFF1702	0.78	-0.0
1,728,932	+		GFF1702	0.78	+0.6
1,728,940	-		GFF1702	0.79	+1.1
1,728,940	-		GFF1702	0.79	+0.0
1,728,940	-		GFF1702	0.79	+1.5
1,728,950	+		GFF1702	0.81	-0.1
1,728,956	+		GFF1702	0.82	-0.9
1,728,966	+		GFF1702	0.83	+0.3
1,728,966	+		GFF1702	0.83	+0.7
1,728,968	+		GFF1702	0.84	-0.6
1,728,968	+		GFF1702	0.84	+0.1
1,728,974	-		GFF1702	0.85	-0.4
1,728,974	-		GFF1702	0.85	+1.0
1,728,974	-		GFF1702	0.85	-1.2
1,728,974	-		GFF1702	0.85	-0.9
1,728,974	-		GFF1702	0.85	-1.3
1,728,974	-		GFF1702	0.85	+0.2
1,728,976	+		GFF1702	0.85	+0.6
1,728,976	-		GFF1702	0.85	+0.1
1,729,029	+				-0.6
1,729,033	-				-0.9
1,729,040	-				+0.1
1,729,052	+				+0.1
1,729,058	+				+0.2
1,729,060	-				-0.3
1,729,068	+				+0.2
1,729,087	-				+0.3
1,729,217	+		GFF1703	0.37	+0.1
1,729,217	+		GFF1703	0.37	+0.9
1,729,223	+		GFF1703	0.40	-0.6
1,729,225	-		GFF1703	0.41	-0.3
1,729,225	-		GFF1703	0.41	+0.1
1,729,225	-		GFF1703	0.41	+0.3
1,729,256	+		GFF1703	0.56	+0.9
1,729,263	+		GFF1703	0.59	-0.9
1,729,264	-		GFF1703	0.60	-0.4
1,729,269	-		GFF1703	0.62	+0.4
1,729,270	-		GFF1703	0.63	+0.3
1,729,278	+		GFF1703	0.67	+1.0
1,729,278	+		GFF1703	0.67	-0.3
1,729,278	+		GFF1703	0.67	+1.1
1,729,283	+		GFF1703	0.69	-0.0
1,729,286	-		GFF1703	0.71	-1.4
1,729,286	-		GFF1703	0.71	-0.5
1,729,288	+		GFF1703	0.71	-0.2
1,729,288	+		GFF1703	0.71	-2.5
1,729,288	+		GFF1703	0.71	-0.2
1,729,288	+		GFF1703	0.71	-0.6
1,729,296	-		GFF1703	0.75	-0.4
1,729,296	-		GFF1703	0.75	+0.5
1,729,296	-		GFF1703	0.75	-0.2
1,729,296	-		GFF1703	0.75	-0.5
1,729,296	-		GFF1703	0.75	+0.7
1,729,296	-		GFF1703	0.75	-1.3
1,729,305	+		GFF1703	0.80	-0.6
1,729,353	-				-1.9
1,729,371	+				+0.7
1,729,387	+				+1.3
1,729,402	+				+0.4
1,729,402	+				+1.7
1,729,404	+				+0.5
1,729,412	+				-0.1
1,729,487	-				+0.4
1,729,487	-				-1.3
1,729,492	+				-0.6
1,729,492	+				-1.1
1,729,500	-				+0.2
1,729,500	-				+0.6
1,729,500	-				-0.5
1,729,500	-				-0.5
1,729,514	+				-0.1
1,729,516	+				+0.4
1,729,516	+				-2.1
1,729,517	-				+0.1
1,729,521	+				-1.1
1,729,541	-				-3.2
1,729,544	-				+0.4
1,729,554	+				-2.0
1,729,610	+		GFF1704	0.22	-0.8
1,729,618	-		GFF1704	0.24	-1.2
1,729,618	-		GFF1704	0.24	-0.5
1,729,618	-		GFF1704	0.24	-0.6
1,729,692	-		GFF1704	0.43	-0.2
1,729,703	+		GFF1704	0.46	-0.9
1,729,703	+		GFF1704	0.46	+0.4
1,729,706	-		GFF1704	0.47	+1.8
1,729,708	+		GFF1704	0.47	-1.1
1,729,708	+		GFF1704	0.47	-0.1
1,729,708	+		GFF1704	0.47	-0.2
1,729,708	+		GFF1704	0.47	+1.5
1,729,708	+		GFF1704	0.47	-1.1
1,729,716	-		GFF1704	0.49	-0.5
1,729,732	+		GFF1704	0.54	+0.4
1,729,801	-		GFF1704	0.72	+0.5
1,729,819	-		GFF1704	0.76	-0.1
1,729,829	-		GFF1704	0.79	+0.8
1,729,829	-		GFF1704	0.79	+0.3
1,729,836	+		GFF1704	0.81	-1.2
1,729,836	+		GFF1704	0.81	-0.0
1,729,836	+		GFF1704	0.81	-1.3
1,729,836	+		GFF1704	0.81	-3.5
1,729,836	+		GFF1704	0.81	-0.2
1,729,839	-		GFF1704	0.82	+1.1
1,729,839	-		GFF1704	0.82	+0.0
1,729,841	+		GFF1704	0.82	+0.9
1,729,841	+		GFF1704	0.82	+0.0
1,729,844	-		GFF1704	0.83	+0.1
1,729,844	-		GFF1704	0.83	-0.6
1,729,844	-		GFF1704	0.83	-0.5
1,729,844	-		GFF1704	0.83	+0.1
1,729,849	-		GFF1704	0.84	-0.6
1,729,849	-		GFF1704	0.84	+0.1
1,729,849	-		GFF1704	0.84	-2.0
1,729,871	-				+0.5
1,729,888	+				-2.4
1,729,896	-				+0.0
1,729,927	+				-0.6
1,729,932	+				-0.5
1,729,935	-				+0.7
1,729,935	-				-0.7
1,729,940	-				-0.1
1,729,940	-				-0.3
1,729,945	+				-0.2
1,729,945	+				-0.7
1,729,982	+				-2.2
1,729,992	+				-0.9
1,729,992	-				+0.9
1,730,006	-				-0.4
1,730,008	+				-1.6
1,730,008	+				+1.1
1,730,008	+				+0.3
1,730,016	-				+0.3
1,730,021	-				-1.8
1,730,022	+				+0.0
1,730,022	+				-1.3
1,730,023	+				+0.1