Strain Fitness in Sphingobium sp. HT1-2 around GFF1653

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,677,694	+		GFF1652	0.10	+0.1
1,677,763	+		GFF1652	0.18	-1.5
1,677,771	-		GFF1652	0.19	+0.9
1,677,781	+		GFF1652	0.20	-0.0
1,677,827	+		GFF1652	0.25	+0.6
1,677,827	+		GFF1652	0.25	-1.6
1,677,827	+		GFF1652	0.25	+0.5
1,677,835	-		GFF1652	0.25	-0.7
1,677,837	+		GFF1652	0.26	-0.7
1,677,853	+		GFF1652	0.27	+0.1
1,677,861	-		GFF1652	0.28	-0.0
1,677,863	+		GFF1652	0.28	-0.2
1,677,866	-		GFF1652	0.29	-0.0
1,677,871	-		GFF1652	0.29	-0.3
1,677,876	+		GFF1652	0.30	-1.0
1,677,931	+		GFF1652	0.36	-0.6
1,677,940	+		GFF1652	0.37	-0.3
1,677,944	+		GFF1652	0.37	-2.0
1,677,969	+		GFF1652	0.40	+0.1
1,677,969	+		GFF1652	0.40	-1.2
1,677,979	+		GFF1652	0.41	+1.0
1,677,979	+		GFF1652	0.41	+2.1
1,677,987	-		GFF1652	0.42	-0.2
1,677,987	-		GFF1652	0.42	+1.2
1,678,031	-		GFF1652	0.46	+1.6
1,678,038	+		GFF1652	0.47	-0.0
1,678,078	+		GFF1652	0.51	+0.6
1,678,089	-		GFF1652	0.52	+0.9
1,678,101	+		GFF1652	0.54	+0.5
1,678,124	+		GFF1652	0.56	-0.7
1,678,129	+		GFF1652	0.57	+0.4
1,678,132	-		GFF1652	0.57	+0.2
1,678,153	+		GFF1652	0.59	+0.5
1,678,153	+		GFF1652	0.59	-0.1
1,678,153	+		GFF1652	0.59	+1.8
1,678,153	+		GFF1652	0.59	+0.2
1,678,161	-		GFF1652	0.60	+0.2
1,678,161	-		GFF1652	0.60	-0.2
1,678,210	-		GFF1652	0.65	+0.2
1,678,210	-		GFF1652	0.65	-2.3
1,678,253	+		GFF1652	0.70	-1.0
1,678,261	-		GFF1652	0.71	-0.2
1,678,278	+		GFF1652	0.72	-0.9
1,678,286	-		GFF1652	0.73	-0.3
1,678,286	-		GFF1652	0.73	+0.9
1,678,308	+		GFF1652	0.76	+1.7
1,678,308	+		GFF1652	0.76	-0.7
1,678,316	-		GFF1652	0.76	-1.2
1,678,316	-		GFF1652	0.76	+0.1
1,678,316	-		GFF1652	0.76	-0.6
1,678,316	-		GFF1652	0.76	+1.0
1,678,339	+		GFF1652	0.79	+1.0
1,678,354	+		GFF1652	0.80	+0.7
1,678,357	-		GFF1652	0.81	-0.2
1,678,419	+		GFF1652	0.87	+0.1
1,678,419	+		GFF1652	0.87	+0.2
1,678,456	+				-1.4
1,678,456	+				-1.5
1,678,473	+				+0.4
1,678,473	+				+0.2
1,678,483	-				-0.4
1,678,489	+				+0.3
1,678,507	+				-0.0
1,678,515	-				+0.6
1,678,517	+				+0.1
1,678,517	+				+0.5
1,678,535	+				-0.6
1,678,546	+				-0.1
1,678,554	-				+1.7
1,678,554	-				-0.9
1,678,592	+				-1.8
1,678,592	+				-0.8
1,678,600	-				-0.4
1,678,606	-				-0.8
1,678,632	-				+0.8
1,678,637	-				-0.6
1,678,637	-				-1.2
1,678,749	+		GFF1653	0.11	+0.4
1,678,749	+		GFF1653	0.11	+0.1
1,678,770	-		GFF1653	0.15	-0.9
1,678,770	-		GFF1653	0.15	+0.2
1,678,773	+		GFF1653	0.16	-0.5
1,678,774	-		GFF1653	0.16	+0.2
1,678,797	+		GFF1653	0.21	-0.2
1,678,803	-		GFF1653	0.22	-0.2
1,678,810	-		GFF1653	0.23	-0.9
1,678,830	+		GFF1653	0.27	-1.5
1,678,837	+		GFF1653	0.29	-0.1
1,678,837	+		GFF1653	0.29	+0.4
1,678,841	+		GFF1653	0.29	+0.1
1,678,847	+		GFF1653	0.31	+0.4
1,678,848	+		GFF1653	0.31	+0.1
1,678,855	-		GFF1653	0.32	-1.5
1,678,862	+		GFF1653	0.34	+1.1
1,678,870	-		GFF1653	0.35	+0.2
1,678,896	+		GFF1653	0.40	+0.1
1,678,921	+		GFF1653	0.45	-1.8
1,678,921	+		GFF1653	0.45	-0.0
1,678,921	+		GFF1653	0.45	-0.7
1,678,929	-		GFF1653	0.47	-0.3
1,678,929	-		GFF1653	0.47	-1.2
1,678,929	-		GFF1653	0.47	-0.1
1,678,929	-		GFF1653	0.47	-0.6
1,678,929	-		GFF1653	0.47	-0.7
1,678,929	-		GFF1653	0.47	-0.3
1,678,929	-		GFF1653	0.47	+1.2
1,678,929	-		GFF1653	0.47	+0.7
1,678,929	-		GFF1653	0.47	+0.6
1,678,929	-		GFF1653	0.47	+1.6
1,678,929	-		GFF1653	0.47	+0.3
1,678,931	-		GFF1653	0.47	-0.6
1,678,938	+		GFF1653	0.49	+1.1
1,678,946	-		GFF1653	0.50	+1.0
1,678,946	-		GFF1653	0.50	+0.1
1,678,946	-		GFF1653	0.50	-1.0
1,678,961	+		GFF1653	0.53	-1.2
1,678,989	+		GFF1653	0.59	-0.5
1,678,991	+		GFF1653	0.59	-0.4
1,679,002	+		GFF1653	0.61	+0.8
1,679,057	-		GFF1653	0.72	-0.3
1,679,057	-		GFF1653	0.72	+0.1
1,679,057	-		GFF1653	0.72	-1.3
1,679,069	+		GFF1653	0.74	-1.3
1,679,083	-		GFF1653	0.77	+0.2
1,679,096	+		GFF1653	0.80	-0.5
1,679,104	-		GFF1653	0.81	-0.0
1,679,104	-		GFF1653	0.81	-0.2
1,679,104	-		GFF1653	0.81	-1.2
1,679,104	-		GFF1653	0.81	+0.2
1,679,114	-		GFF1653	0.83	+1.0
1,679,161	+				+0.4
1,679,161	+				-0.6
1,679,161	+				+0.6
1,679,161	+				-0.3
1,679,161	+				-0.2
1,679,161	+				-0.4
1,679,161	+				-1.3
1,679,161	+				-0.6
1,679,161	+				+0.5
1,679,161	+				-0.0
1,679,169	-				-1.5
1,679,169	-				+0.5
1,679,169	-				+1.1
1,679,169	-				-1.4
1,679,169	-				+0.4
1,679,169	-				-1.5
1,679,169	-				-0.7
1,679,169	-				-0.1
1,679,169	-				-1.5
1,679,169	-				-1.7
1,679,169	-				-1.5
1,679,169	-				+0.7
1,679,169	-				+0.7
1,679,193	+				+0.7
1,679,218	+				+0.3
1,679,218	+				+1.5
1,679,239	+				+0.9
1,679,247	-				-0.1
1,679,248	+				-0.2
1,679,248	+				-0.0
1,679,251	-				+0.7
1,679,278	+				-1.5
1,679,293	-				+1.0
1,679,298	+		GFF1654	0.10	-1.1
1,679,298	+		GFF1654	0.10	-0.1
1,679,306	-		GFF1654	0.12	-0.0
1,679,314	+		GFF1654	0.13	+0.4
1,679,329	-		GFF1654	0.16	-1.5
1,679,332	+		GFF1654	0.16	-0.7
1,679,332	-		GFF1654	0.16	-0.4
1,679,332	-		GFF1654	0.16	-1.5
1,679,348	-		GFF1654	0.19	-0.0
1,679,349	+		GFF1654	0.19	-0.9
1,679,356	+		GFF1654	0.21	+0.1
1,679,356	+		GFF1654	0.21	+0.7
1,679,357	-		GFF1654	0.21	+0.4
1,679,364	-		GFF1654	0.22	+0.3
1,679,378	+		GFF1654	0.25	+1.1
1,679,379	+		GFF1654	0.25	+0.5
1,679,399	+		GFF1654	0.28	-0.3
1,679,407	-		GFF1654	0.30	-1.9
1,679,407	-		GFF1654	0.30	+0.1
1,679,428	-		GFF1654	0.34	-0.5
1,679,445	+		GFF1654	0.37	+0.5
1,679,453	-		GFF1654	0.38	-1.0
1,679,455	+		GFF1654	0.39	+0.2
1,679,459	+		GFF1654	0.39	-0.1
1,679,464	+		GFF1654	0.40	-0.9
1,679,467	-		GFF1654	0.41	+1.6
1,679,480	+		GFF1654	0.43	-1.9
1,679,485	+		GFF1654	0.44	+0.7
1,679,485	+		GFF1654	0.44	+0.6
1,679,485	+		GFF1654	0.44	+0.6
1,679,490	+		GFF1654	0.45	-0.8
1,679,490	+		GFF1654	0.45	+0.8
1,679,490	+		GFF1654	0.45	+0.5
1,679,490	+		GFF1654	0.45	-1.1
1,679,490	+		GFF1654	0.45	-0.9
1,679,490	+		GFF1654	0.45	-0.8
1,679,490	+		GFF1654	0.45	-1.3
1,679,493	-		GFF1654	0.45	-0.4
1,679,498	-		GFF1654	0.46	+1.1
1,679,498	-		GFF1654	0.46	+0.3
1,679,504	+		GFF1654	0.47	-1.4
1,679,539	-		GFF1654	0.54	+0.0
1,679,550	+		GFF1654	0.56	-1.6
1,679,562	+		GFF1654	0.58	+1.5
1,679,563	+		GFF1654	0.58	+1.5
1,679,568	-		GFF1654	0.59	+0.9
1,679,583	+		GFF1654	0.62	-0.6
1,679,590	-		GFF1654	0.63	-1.0
1,679,597	+		GFF1654	0.64	-0.2
1,679,607	+		GFF1654	0.66	-0.3
1,679,676	-		GFF1654	0.78	+0.0
1,679,706	-		GFF1654	0.84	+0.2
1,679,717	+		GFF1654	0.86	-0.1
1,679,719	+		GFF1654	0.86	-0.7
1,679,742	-				-1.8
1,679,749	+				+0.5
1,679,760	+				-0.8
1,679,774	+				+0.7
1,679,780	+				+0.3
1,679,792	+				-0.3
1,679,800	-				-0.4
1,679,834	+				+0.1
1,679,839	+				+1.1
1,679,847	-				-0.2