Strain Fitness in Sphingobium sp. HT1-2 around GFF1610

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,636,368	+		GFF1608	0.76	+1.4
1,636,368	+		GFF1608	0.76	-0.1
1,636,378	+		GFF1608	0.77	-2.1
1,636,378	+		GFF1608	0.77	-1.2
1,636,386	-		GFF1608	0.77	-2.2
1,636,386	-		GFF1608	0.77	+0.4
1,636,386	-		GFF1608	0.77	+0.2
1,636,396	+		GFF1608	0.78	-1.6
1,636,396	+		GFF1608	0.78	-0.6
1,636,396	+		GFF1608	0.78	-0.9
1,636,399	-		GFF1608	0.78	-1.5
1,636,404	-		GFF1608	0.78	-0.9
1,636,404	-		GFF1608	0.78	+1.0
1,636,419	-		GFF1608	0.79	+2.0
1,636,437	+		GFF1608	0.79	-0.2
1,636,461	+		GFF1608	0.81	-0.4
1,636,461	+		GFF1608	0.81	-1.2
1,636,469	-		GFF1608	0.81	-1.5
1,636,469	-		GFF1608	0.81	+0.7
1,636,504	-		GFF1608	0.83	-0.9
1,636,506	+		GFF1608	0.83	-0.2
1,636,506	+		GFF1608	0.83	-1.9
1,636,506	+		GFF1608	0.83	+0.3
1,636,506	+		GFF1608	0.83	+0.5
1,636,521	+		GFF1608	0.83	-0.9
1,636,524	-		GFF1608	0.83	-0.6
1,636,531	+		GFF1608	0.84	-0.1
1,636,531	+		GFF1608	0.84	-0.0
1,636,555	+		GFF1608	0.85	-0.1
1,636,565	+		GFF1608	0.85	-2.7
1,636,565	-		GFF1608	0.85	-2.8
1,636,572	+		GFF1608	0.86	+1.0
1,636,572	+		GFF1608	0.86	+0.7
1,636,572	+		GFF1608	0.86	-1.7
1,636,572	+		GFF1608	0.86	+0.2
1,636,572	+		GFF1608	0.86	+0.9
1,636,572	+		GFF1608	0.86	+0.4
1,636,580	-		GFF1608	0.86	-0.2
1,636,580	-		GFF1608	0.86	-1.1
1,636,580	-		GFF1608	0.86	-0.7
1,636,580	-		GFF1608	0.86	-0.7
1,636,596	+		GFF1608	0.87	+0.5
1,636,597	+		GFF1608	0.87	+0.4
1,636,626	-		GFF1608	0.88	-0.7
1,636,631	-		GFF1608	0.88	-1.1
1,636,640	+		GFF1608	0.89	-0.4
1,636,657	+		GFF1608	0.89	+0.8
1,636,681	+				-0.1
1,636,681	+				+0.8
1,636,681	+				+0.1
1,636,689	-				-1.0
1,636,689	-				-0.6
1,636,689	-				+0.3
1,636,689	-				+0.3
1,636,689	-				-1.4
1,636,725	+				+0.8
1,636,725	+				-0.6
1,636,733	-				-0.5
1,636,781	-				+0.9
1,636,801	+				+0.4
1,636,815	+				-1.7
1,636,816	-				+0.8
1,636,817	-				-0.6
1,636,817	-				-2.1
1,636,819	+				-2.4
1,636,819	+				-0.6
1,636,819	+				-0.3
1,636,819	+				-0.5
1,636,823	-				+0.1
1,636,827	-				+0.1
1,636,827	-				-0.2
1,636,827	-				+0.7
1,636,834	+				-0.2
1,636,834	+				-0.9
1,636,834	+				-1.8
1,636,834	+				-0.1
1,636,842	-				+0.3
1,636,845	+				-0.5
1,636,845	+				+1.7
1,636,853	-				+0.3
1,636,853	-				+0.5
1,636,853	-				-1.1
1,636,855	+				-0.2
1,636,855	+				-0.9
1,636,855	+				+0.1
1,636,855	+				+0.4
1,636,855	+				-0.7
1,636,855	+				+0.3
1,636,855	+				-0.5
1,636,855	+				-2.2
1,636,863	-				-0.9
1,636,863	-				+0.4
1,636,863	-				-0.4
1,636,863	-				+0.5
1,636,863	-				+0.4
1,636,863	-				-0.1
1,636,863	-				+1.6
1,636,863	-				-0.8
1,636,863	-				-1.9
1,636,887	+				-0.6
1,636,887	+				-1.9
1,636,892	+				+0.1
1,636,895	-				-1.6
1,636,897	+				+0.1
1,636,900	-				-0.9
1,636,905	-				-0.1
1,636,905	-				-1.6
1,636,905	-				-0.9
1,636,937	+				-2.7
1,636,945	-				-0.1
1,636,955	-				-0.5
1,636,969	-				+1.1
1,636,977	-				+1.0
1,636,977	-				+0.5
1,636,987	+				-1.1
1,636,988	+				-1.1
1,636,988	+				-0.3
1,636,988	+				+0.1
1,636,988	+				+0.1
1,636,988	+				+0.0
1,636,988	+				-1.4
1,636,993	+				-1.6
1,636,993	+				+0.3
1,636,996	-				-0.3
1,636,996	-				-0.2
1,636,996	-				+0.5
1,636,996	-				+0.3
1,636,996	-				+1.1
1,636,996	-				+0.5
1,636,996	-				-0.2
1,636,996	-				+0.2
1,636,996	-				+0.1
1,636,996	-				+1.7
1,636,996	-				+1.2
1,636,996	-				+0.6
1,636,998	+				-0.2
1,636,998	+				+0.1
1,636,998	+				-0.5
1,636,998	+				-0.4
1,637,005	+				-0.0
1,637,006	+				-0.5
1,637,006	-				-0.8
1,637,006	-				-0.5
1,637,006	-				+0.3
1,637,006	-				-1.7
1,637,012	+				-0.7
1,637,052	+		GFF1609	0.24	-0.6
1,637,052	+		GFF1609	0.24	+0.1
1,637,052	+		GFF1609	0.24	+0.8
1,637,066	+		GFF1609	0.32	+1.1
1,637,068	+		GFF1609	0.33	-1.4
1,637,074	-		GFF1609	0.37	-0.4
1,637,074	-		GFF1609	0.37	+0.4
1,637,074	-		GFF1609	0.37	+0.9
1,637,085	+		GFF1609	0.43	+0.9
1,637,092	+		GFF1609	0.47	-0.4
1,637,100	-		GFF1609	0.51	-2.9
1,637,108	-		GFF1609	0.56	-0.5
1,637,108	-		GFF1609	0.56	+0.4
1,637,109	+		GFF1609	0.56	-2.5
1,637,126	+		GFF1609	0.66	+0.6
1,637,157	+		GFF1609	0.83	+1.0
1,637,176	+				+0.5
1,637,178	+				+0.3
1,637,178	+				-1.5
1,637,194	+				+0.0
1,637,194	+				+1.2
1,637,199	+				-1.8
1,637,199	+				+1.4
1,637,213	+				-0.0
1,637,213	+				-0.7
1,637,216	-				-0.7
1,637,221	+				-0.4
1,637,221	-				-0.4
1,637,221	-				-0.8
1,637,240	-				-2.1
1,637,248	+				+1.4
1,637,253	+				+0.1
1,637,256	-				-1.5
1,637,266	-				+0.4
1,637,283	+				-0.3
1,637,283	+				+0.3
1,637,286	-				+0.4
1,637,286	-				-1.7
1,637,289	-				-2.6
1,637,291	-				-2.6
1,637,291	-				-1.4
1,637,297	+				+0.1
1,637,297	+				-1.2
1,637,297	+				-1.6
1,637,297	+				+0.5
1,637,298	+				-2.6
1,637,304	+				-1.2
1,637,304	+				-0.2
1,637,305	-				-2.2
1,637,305	-				+0.3
1,637,306	+				-2.2
1,637,306	+				+0.1
1,637,306	+				-0.3
1,637,306	-				-0.4
1,637,311	-				-0.1
1,637,312	-				-0.1
1,637,314	-				+0.3
1,637,319	-				-0.7
1,637,324	-				-0.2
1,637,324	-				-0.5
1,637,329	-				-0.6
1,637,338	-				-1.2
1,637,354	-				-0.4
1,637,402	+				-0.6
1,637,405	+				-1.1
1,637,407	+				-0.1
1,637,407	+				-0.8
1,637,415	-				+0.6
1,637,415	-				-0.8
1,637,415	-				+0.4
1,637,420	-				+0.1
1,637,422	-				-1.4
1,637,422	-				-0.2
1,637,422	-				+1.3
1,637,422	-				-0.7
1,637,422	-				-0.4
1,637,422	-				+0.2
1,637,435	-				-0.8
1,637,464	+				-1.0
1,637,533	+		GFF1610	0.15	-0.9
1,637,539	-		GFF1610	0.16	-1.6
1,637,541	-		GFF1610	0.16	+0.5
1,637,547	+		GFF1610	0.16	-1.1
1,637,562	+		GFF1610	0.18	-3.4
1,637,562	+		GFF1610	0.18	+1.1
1,637,562	+		GFF1610	0.18	+1.4
1,637,562	+		GFF1610	0.18	+0.4
1,637,570	-		GFF1610	0.19	-0.4
1,637,570	-		GFF1610	0.19	-1.0
1,637,595	-		GFF1610	0.21	+0.8
1,637,597	+		GFF1610	0.21	+0.5
1,637,605	-		GFF1610	0.22	+0.1
1,637,605	-		GFF1610	0.22	+0.0
1,637,613	+		GFF1610	0.23	-1.5
1,637,655	+		GFF1610	0.26	-0.7
1,637,672	+		GFF1610	0.28	+1.6
1,637,705	+		GFF1610	0.31	-2.2
1,637,705	+		GFF1610	0.31	+0.9
1,637,705	+		GFF1610	0.31	-1.2
1,637,705	+		GFF1610	0.31	-2.4
1,637,705	+		GFF1610	0.31	-1.9
1,637,705	+		GFF1610	0.31	+0.7
1,637,710	+		GFF1610	0.31	+0.7
1,637,713	-		GFF1610	0.32	-2.2
1,637,715	+		GFF1610	0.32	-0.5
1,637,718	-		GFF1610	0.32	+0.3
1,637,718	-		GFF1610	0.32	+1.2
1,637,718	-		GFF1610	0.32	+0.6
1,637,718	-		GFF1610	0.32	+1.4
1,637,718	-		GFF1610	0.32	+0.8
1,637,728	+		GFF1610	0.33	-0.1
1,637,728	+		GFF1610	0.33	+0.7
1,637,728	-		GFF1610	0.33	+0.6
1,637,730	-		GFF1610	0.33	-1.4
1,637,730	-		GFF1610	0.33	-1.8
1,637,730	-		GFF1610	0.33	+0.1
1,637,737	+		GFF1610	0.34	+0.4
1,637,737	+		GFF1610	0.34	+0.1
1,637,737	+		GFF1610	0.34	+0.2
1,637,737	+		GFF1610	0.34	-0.8
1,637,742	+		GFF1610	0.34	+0.4
1,637,745	-		GFF1610	0.35	+0.6
1,637,747	+		GFF1610	0.35	-0.2
1,637,747	+		GFF1610	0.35	-0.4
1,637,747	+		GFF1610	0.35	+0.1
1,637,747	+		GFF1610	0.35	-1.9
1,637,747	+		GFF1610	0.35	+1.0
1,637,747	+		GFF1610	0.35	-0.6
1,637,747	+		GFF1610	0.35	+0.5
1,637,747	+		GFF1610	0.35	+0.0
1,637,747	+		GFF1610	0.35	-0.2
1,637,747	+		GFF1610	0.35	+0.3
1,637,752	+		GFF1610	0.35	-1.0
1,637,755	-		GFF1610	0.36	+1.3
1,637,755	-		GFF1610	0.36	+0.1
1,637,755	-		GFF1610	0.36	-0.5
1,637,755	-		GFF1610	0.36	-0.9
1,637,755	-		GFF1610	0.36	-0.2
1,637,755	-		GFF1610	0.36	+0.5
1,637,755	-		GFF1610	0.36	-0.9
1,637,755	-		GFF1610	0.36	+1.2
1,637,755	-		GFF1610	0.36	-1.4
1,637,774	+		GFF1610	0.37	-1.3
1,637,775	-		GFF1610	0.37	-1.7
1,637,775	-		GFF1610	0.37	-1.3
1,637,780	+		GFF1610	0.38	-1.3
1,637,780	+		GFF1610	0.38	+0.2
1,637,782	-		GFF1610	0.38	-0.1
1,637,788	-		GFF1610	0.39	-0.4
1,637,836	+		GFF1610	0.43	-1.6
1,637,844	+		GFF1610	0.44	-0.7
1,637,872	-		GFF1610	0.46	+0.1
1,637,872	-		GFF1610	0.46	-0.4
1,637,888	-		GFF1610	0.48	-0.4
1,637,888	-		GFF1610	0.48	+1.0
1,637,911	-		GFF1610	0.50	-0.6
1,637,917	+		GFF1610	0.51	-0.3
1,637,917	+		GFF1610	0.51	+0.6
1,637,925	-		GFF1610	0.51	-0.0
1,637,925	-		GFF1610	0.51	-1.5
1,637,925	-		GFF1610	0.51	+0.5
1,637,958	+		GFF1610	0.54	+0.2
1,637,958	+		GFF1610	0.54	+0.2
1,637,969	+		GFF1610	0.55	-0.1
1,637,969	+		GFF1610	0.55	+0.4
1,637,977	-		GFF1610	0.56	-2.2
1,637,977	-		GFF1610	0.56	-1.2
1,638,014	-		GFF1610	0.59	-1.0
1,638,015	+		GFF1610	0.60	-1.4
1,638,048	+		GFF1610	0.63	-0.4
1,638,079	-		GFF1610	0.65	+0.5
1,638,087	+		GFF1610	0.66	-0.7
1,638,087	+		GFF1610	0.66	-0.2
1,638,087	+		GFF1610	0.66	-0.9
1,638,095	-		GFF1610	0.67	-0.4
1,638,095	-		GFF1610	0.67	-0.1
1,638,095	-		GFF1610	0.67	+0.8
1,638,095	-		GFF1610	0.67	+0.6
1,638,095	-		GFF1610	0.67	-0.0
1,638,095	-		GFF1610	0.67	+0.2
1,638,111	+		GFF1610	0.68	-1.0
1,638,116	+		GFF1610	0.69	+1.2
1,638,116	+		GFF1610	0.69	-1.4
1,638,131	+		GFF1610	0.70	+0.5
1,638,134	-		GFF1610	0.71	-0.3
1,638,139	-		GFF1610	0.71	-0.1
1,638,144	-		GFF1610	0.71	+0.9
1,638,170	-		GFF1610	0.74	-0.3
1,638,193	-		GFF1610	0.76	+0.6
1,638,193	-		GFF1610	0.76	-0.2
1,638,212	+		GFF1610	0.78	-0.6
1,638,217	-		GFF1610	0.78	-0.4
1,638,222	-		GFF1610	0.79	-0.4
1,638,226	+		GFF1610	0.79	-0.5
1,638,244	-		GFF1610	0.81	+0.9
1,638,249	+		GFF1610	0.81	+0.2
1,638,262	+		GFF1610	0.82	-0.8
1,638,262	+		GFF1610	0.82	+0.8
1,638,262	+		GFF1610	0.82	+0.4
1,638,262	+		GFF1610	0.82	+0.4
1,638,270	-		GFF1610	0.83	-1.9
1,638,270	-		GFF1610	0.83	+0.5
1,638,270	-		GFF1610	0.83	-1.2
1,638,270	-		GFF1610	0.83	+0.4
1,638,276	+		GFF1610	0.84	-1.7
1,638,277	+		GFF1610	0.84	+0.2
1,638,284	-		GFF1610	0.84	+0.3
1,638,285	-		GFF1610	0.84	-1.5
1,638,294	+		GFF1610	0.85	-0.1
1,638,307	-		GFF1610	0.86	-0.9
1,638,307	-		GFF1610	0.86	-1.8
1,638,325	+		GFF1610	0.88	+0.0
1,638,328	-		GFF1610	0.88	-1.2
1,638,403	-				-1.1
1,638,415	+				-0.1
1,638,423	-				+0.1
1,638,423	-				-1.6
1,638,482	-				-1.1
1,638,484	+				+0.7
1,638,487	-				-1.4
1,638,501	+				+0.1
1,638,501	+				-0.8
1,638,509	-				+0.5
1,638,509	-				+0.1
1,638,509	-				-0.6
1,638,509	-				-0.2
1,638,530	+				-0.1
1,638,569	-				-0.6
1,638,574	-				+0.9
1,638,583	+		GFF1611	0.11	-0.8
1,638,583	+		GFF1611	0.11	-0.3
1,638,591	-		GFF1611	0.12	+0.8
1,638,591	-		GFF1611	0.12	-2.5
1,638,591	-		GFF1611	0.12	+0.2
1,638,605	-		GFF1611	0.14	+0.6
1,638,630	+		GFF1611	0.18	-2.0
1,638,637	+		GFF1611	0.19	+0.2
1,638,650	+		GFF1611	0.21	+0.3
1,638,650	+		GFF1611	0.21	-0.6
1,638,652	+		GFF1611	0.21	+0.2
1,638,658	-		GFF1611	0.22	+0.4
1,638,658	-		GFF1611	0.22	-0.0
1,638,658	-		GFF1611	0.22	+0.2
1,638,658	-		GFF1611	0.22	-1.6
1,638,658	-		GFF1611	0.22	+0.4
1,638,660	+		GFF1611	0.22	-1.7
1,638,664	+		GFF1611	0.23	-1.9
1,638,711	+		GFF1611	0.30	-0.0
1,638,720	-		GFF1611	0.31	+0.1
1,638,728	+		GFF1611	0.32	+0.4
1,638,756	-		GFF1611	0.36	-0.9
1,638,758	+		GFF1611	0.36	-0.9
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