Strain Fitness in Sphingobium sp. HT1-2 around GFF1579

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,606,861	+				-0.1
1,606,861	+				-0.2
1,606,861	+				-0.0
1,606,863	-				+0.7
1,606,865	+				+0.6
1,606,871	+				+1.9
1,606,871	+				+0.4
1,606,871	+				-0.7
1,606,871	+				+0.0
1,606,879	-				+1.3
1,606,879	-				-2.2
1,606,926	+				-0.4
1,606,959	-				+0.9
1,606,959	-				-0.6
1,606,964	-				+0.6
1,606,974	-				-0.9
1,606,976	+				-0.6
1,606,984	-				-2.1
1,607,001	+				-1.6
1,607,008	+				-1.3
1,607,009	-				-0.4
1,607,064	+		GFF1578	0.15	-2.2
1,607,072	-		GFF1578	0.16	+0.0
1,607,077	+		GFF1578	0.17	+0.5
1,607,085	-		GFF1578	0.18	-0.4
1,607,087	+		GFF1578	0.18	-1.0
1,607,087	+		GFF1578	0.18	-0.0
1,607,087	+		GFF1578	0.18	-2.1
1,607,087	+		GFF1578	0.18	-0.5
1,607,087	+		GFF1578	0.18	-1.1
1,607,087	+		GFF1578	0.18	-1.2
1,607,087	+		GFF1578	0.18	-0.1
1,607,095	-		GFF1578	0.19	+0.4
1,607,095	-		GFF1578	0.19	-0.4
1,607,095	-		GFF1578	0.19	-1.8
1,607,095	-		GFF1578	0.19	+0.1
1,607,095	-		GFF1578	0.19	+0.9
1,607,095	-		GFF1578	0.19	+0.2
1,607,095	-		GFF1578	0.19	-0.2
1,607,095	-		GFF1578	0.19	-0.7
1,607,095	-		GFF1578	0.19	-1.5
1,607,095	-		GFF1578	0.19	-0.5
1,607,097	+		GFF1578	0.20	+0.4
1,607,105	-		GFF1578	0.21	-0.4
1,607,112	+		GFF1578	0.22	+1.3
1,607,120	-		GFF1578	0.23	+0.3
1,607,123	-		GFF1578	0.23	-0.9
1,607,128	+		GFF1578	0.24	+0.6
1,607,133	+		GFF1578	0.24	-1.0
1,607,133	+		GFF1578	0.24	+0.1
1,607,159	+		GFF1578	0.28	-1.4
1,607,159	+		GFF1578	0.28	-0.4
1,607,169	+		GFF1578	0.29	+0.6
1,607,177	-		GFF1578	0.30	-1.6
1,607,216	+		GFF1578	0.36	+0.6
1,607,216	+		GFF1578	0.36	-2.1
1,607,216	+		GFF1578	0.36	-1.2
1,607,222	+		GFF1578	0.37	+0.1
1,607,222	+		GFF1578	0.37	-0.9
1,607,224	-		GFF1578	0.37	+0.5
1,607,227	-		GFF1578	0.37	+0.2
1,607,230	-		GFF1578	0.38	-2.3
1,607,237	+		GFF1578	0.39	-0.4
1,607,238	+		GFF1578	0.39	-0.6
1,607,244	-		GFF1578	0.40	+0.0
1,607,244	-		GFF1578	0.40	-1.0
1,607,246	-		GFF1578	0.40	+1.3
1,607,257	+		GFF1578	0.41	+0.9
1,607,257	+		GFF1578	0.41	+0.3
1,607,257	+		GFF1578	0.41	-0.5
1,607,259	-		GFF1578	0.42	-2.7
1,607,265	-		GFF1578	0.42	-0.8
1,607,282	+		GFF1578	0.45	-0.4
1,607,285	+		GFF1578	0.45	-1.6
1,607,295	+		GFF1578	0.47	-0.0
1,607,295	+		GFF1578	0.47	+1.4
1,607,295	+		GFF1578	0.47	+1.0
1,607,295	+		GFF1578	0.47	-0.5
1,607,343	+		GFF1578	0.53	+0.8
1,607,352	+		GFF1578	0.54	+0.3
1,607,360	-		GFF1578	0.55	-0.7
1,607,435	+		GFF1578	0.66	-0.9
1,607,443	-		GFF1578	0.67	+0.2
1,607,443	-		GFF1578	0.67	+0.4
1,607,467	-		GFF1578	0.70	+0.0
1,607,500	+		GFF1578	0.74	-0.2
1,607,506	-		GFF1578	0.75	+0.2
1,607,523	+		GFF1578	0.78	-0.1
1,607,523	+		GFF1578	0.78	+0.1
1,607,531	-		GFF1578	0.79	+0.4
1,607,531	-		GFF1578	0.79	-0.0
1,607,531	-		GFF1578	0.79	+1.3
1,607,552	+		GFF1578	0.81	+0.1
1,607,552	+		GFF1578	0.81	+0.1
1,607,565	-		GFF1578	0.83	+0.9
1,607,570	-		GFF1578	0.84	-2.5
1,607,576	+		GFF1578	0.85	+2.0
1,607,600	+		GFF1578	0.88	+0.1
1,607,600	+		GFF1578	0.88	+1.5
1,607,608	-		GFF1578	0.89	+0.4
1,607,608	-		GFF1578	0.89	+1.0
1,607,608	-		GFF1578	0.89	+0.7
1,607,608	-		GFF1578	0.89	-1.6
1,607,630	+				-1.3
1,607,633	-				+0.3
1,607,633	-				-0.6
1,607,635	+				-1.2
1,607,645	+				-0.2
1,607,688	-				-1.6
1,607,688	-				+1.5
1,607,714	+				+0.6
1,607,714	+				+0.1
1,607,714	+				+0.6
1,607,719	+				-0.7
1,607,719	+				-0.5
1,607,719	+				-0.9
1,607,722	-				-0.9
1,607,722	-				+1.2
1,607,722	-				+0.8
1,607,724	+				-2.2
1,607,727	-				-0.1
1,607,727	-				-1.7
1,607,727	-				+0.5
1,607,730	+				-0.0
1,607,730	+				+2.5
1,607,732	-				-1.0
1,607,742	+				-1.6
1,607,748	+				-1.8
1,607,814	+				+0.2
1,607,816	+				+0.4
1,607,819	-				+0.4
1,607,824	-				-0.5
1,607,874	+				-1.1
1,607,874	-				-0.2
1,607,901	-				-0.9
1,607,901	-				-2.1
1,607,904	+				+1.5
1,607,904	+				-1.9
1,607,904	+				-1.1
1,607,912	-				-0.8
1,607,912	-				-0.8
1,607,912	-				+1.0
1,607,936	+				-1.4
1,607,936	+				+0.5
1,607,938	-				-1.2
1,607,939	-				-1.5
1,607,940	+				-1.2
1,607,946	+				-2.3
1,607,953	+				-0.7
1,607,978	+				+0.5
1,607,978	+				-1.6
1,607,978	+				-0.4
1,607,978	+				-0.9
1,607,979	-				+0.1
1,607,986	-		GFF1579	0.10	-0.1
1,607,986	-		GFF1579	0.10	+0.9
1,607,986	-		GFF1579	0.10	+0.2
1,607,986	-		GFF1579	0.10	+0.1
1,607,986	-		GFF1579	0.10	+0.2
1,607,986	-		GFF1579	0.10	+0.9
1,607,986	-		GFF1579	0.10	+1.1
1,607,986	-		GFF1579	0.10	-1.1
1,607,988	+		GFF1579	0.11	+0.1
1,607,996	-		GFF1579	0.11	+1.0
1,607,996	-		GFF1579	0.11	-1.2
1,607,996	-		GFF1579	0.11	-0.4
1,607,996	-		GFF1579	0.11	-0.3
1,607,996	-		GFF1579	0.11	+0.8
1,607,996	-		GFF1579	0.11	-2.2
1,607,998	+		GFF1579	0.11	-2.4
1,607,998	+		GFF1579	0.11	+0.3
1,608,006	-		GFF1579	0.12	-1.3
1,608,011	+		GFF1579	0.12	+0.9
1,608,016	+		GFF1579	0.13	+0.3
1,608,016	+		GFF1579	0.13	-0.5
1,608,016	+		GFF1579	0.13	+0.4
1,608,016	+		GFF1579	0.13	-0.1
1,608,016	+		GFF1579	0.13	+0.1
1,608,016	+		GFF1579	0.13	+0.4
1,608,016	+		GFF1579	0.13	-0.3
1,608,019	-		GFF1579	0.13	-1.4
1,608,024	-		GFF1579	0.14	+0.8
1,608,024	-		GFF1579	0.14	+0.3
1,608,024	-		GFF1579	0.14	-0.8
1,608,027	+		GFF1579	0.14	-1.2
1,608,035	-		GFF1579	0.14	-0.7
1,608,035	-		GFF1579	0.14	-0.2
1,608,040	+		GFF1579	0.15	-1.4
1,608,048	-		GFF1579	0.16	-0.2
1,608,048	-		GFF1579	0.16	-0.4
1,608,048	-		GFF1579	0.16	+1.0
1,608,070	+		GFF1579	0.17	-0.9
1,608,075	+		GFF1579	0.18	-0.1
1,608,078	-		GFF1579	0.18	-0.2
1,608,083	-		GFF1579	0.18	-0.2
1,608,083	-		GFF1579	0.18	-0.8
1,608,083	-		GFF1579	0.18	-1.3
1,608,086	+		GFF1579	0.19	+0.5
1,608,091	+		GFF1579	0.19	-0.2
1,608,091	+		GFF1579	0.19	+0.6
1,608,099	-		GFF1579	0.20	+1.4
1,608,107	-		GFF1579	0.20	-3.0
1,608,114	+		GFF1579	0.21	-1.2
1,608,122	-		GFF1579	0.22	-0.6
1,608,122	-		GFF1579	0.22	-1.0
1,608,145	-		GFF1579	0.24	+0.1
1,608,155	-		GFF1579	0.24	+0.1
1,608,158	-		GFF1579	0.25	-0.3
1,608,163	+		GFF1579	0.25	-0.1
1,608,168	+		GFF1579	0.25	-0.4
1,608,176	-		GFF1579	0.26	-0.5
1,608,176	-		GFF1579	0.26	-0.6
1,608,303	-		GFF1579	0.37	+0.2
1,608,308	+		GFF1579	0.37	+0.4
1,608,338	-		GFF1579	0.40	-1.6
1,608,352	+		GFF1579	0.41	-1.2
1,608,352	+		GFF1579	0.41	+0.2
1,608,360	-		GFF1579	0.41	-0.7
1,608,381	-		GFF1579	0.43	-0.8
1,608,384	+		GFF1579	0.43	+0.0
1,608,384	+		GFF1579	0.43	+0.2
1,608,400	+		GFF1579	0.45	+0.6
1,608,400	+		GFF1579	0.45	-0.0
1,608,403	-		GFF1579	0.45	-0.1
1,608,467	+		GFF1579	0.50	+1.2
1,608,475	+		GFF1579	0.51	-1.4
1,608,477	+		GFF1579	0.51	-0.1
1,608,512	+		GFF1579	0.54	+0.4
1,608,520	-		GFF1579	0.55	+0.0
1,608,527	+		GFF1579	0.55	-0.7
1,608,531	+		GFF1579	0.56	-0.1
1,608,532	+		GFF1579	0.56	-0.2
1,608,570	-		GFF1579	0.59	+0.8
1,608,571	+		GFF1579	0.59	-2.1
1,608,571	+		GFF1579	0.59	+1.0
1,608,571	+		GFF1579	0.59	+0.9
1,608,571	-		GFF1579	0.59	-0.5
1,608,576	+		GFF1579	0.59	-0.5
1,608,576	+		GFF1579	0.59	+1.1
1,608,576	+		GFF1579	0.59	-0.2
1,608,579	-		GFF1579	0.59	-1.4
1,608,579	-		GFF1579	0.59	+0.4
1,608,581	+		GFF1579	0.60	-0.4
1,608,584	-		GFF1579	0.60	-2.7
1,608,589	-		GFF1579	0.60	-0.8
1,608,589	-		GFF1579	0.60	+0.1
1,608,591	+		GFF1579	0.60	-1.0
1,608,591	+		GFF1579	0.60	-0.4
1,608,597	+		GFF1579	0.61	-0.4
1,608,597	+		GFF1579	0.61	+0.3
1,608,624	+		GFF1579	0.63	+0.1
1,608,624	+		GFF1579	0.63	-1.7
1,608,632	-		GFF1579	0.64	+1.7
1,608,668	-		GFF1579	0.67	+1.0
1,608,692	+		GFF1579	0.69	-0.8
1,608,692	+		GFF1579	0.69	+0.5
1,608,692	+		GFF1579	0.69	-0.3
1,608,692	+		GFF1579	0.69	-2.2
1,608,692	+		GFF1579	0.69	+0.9
1,608,692	+		GFF1579	0.69	-1.8
1,608,692	+		GFF1579	0.69	-0.8
1,608,692	+		GFF1579	0.69	-1.2
1,608,694	+		GFF1579	0.69	+0.8
1,608,700	-		GFF1579	0.69	-0.3
1,608,700	-		GFF1579	0.69	-1.1
1,608,700	-		GFF1579	0.69	+0.1
1,608,700	-		GFF1579	0.69	+0.6
1,608,700	-		GFF1579	0.69	+0.4
1,608,700	-		GFF1579	0.69	+1.1
1,608,700	-		GFF1579	0.69	+0.5
1,608,700	-		GFF1579	0.69	+0.9
1,608,700	-		GFF1579	0.69	-0.1
1,608,700	-		GFF1579	0.69	+0.8
1,608,700	-		GFF1579	0.69	-1.0
1,608,711	+		GFF1579	0.70	+0.5
1,608,719	-		GFF1579	0.71	-1.1
1,608,719	-		GFF1579	0.71	-1.4
1,608,719	-		GFF1579	0.71	-1.3
1,608,719	-		GFF1579	0.71	+0.3
1,608,723	+		GFF1579	0.71	-0.1
1,608,734	+		GFF1579	0.72	-0.9
1,608,734	+		GFF1579	0.72	+0.7
1,608,734	+		GFF1579	0.72	-1.2
1,608,734	+		GFF1579	0.72	+0.4
1,608,742	-		GFF1579	0.73	-0.6
1,608,750	-		GFF1579	0.74	+0.1
1,608,784	+		GFF1579	0.76	+1.3
1,608,784	+		GFF1579	0.76	+0.1
1,608,792	-		GFF1579	0.77	-0.9
1,608,792	-		GFF1579	0.77	-0.0
1,608,792	-		GFF1579	0.77	-1.6
1,608,794	+		GFF1579	0.77	+1.1
1,608,799	+		GFF1579	0.78	+0.1
1,608,799	+		GFF1579	0.78	-2.2
1,608,799	+		GFF1579	0.78	+1.2
1,608,802	-		GFF1579	0.78	+0.5
1,608,807	-		GFF1579	0.78	-0.0
1,608,807	-		GFF1579	0.78	-0.7
1,608,807	-		GFF1579	0.78	-2.4
1,608,807	-		GFF1579	0.78	+1.2
1,608,807	-		GFF1579	0.78	-1.4
1,608,807	-		GFF1579	0.78	+1.0
1,608,824	+		GFF1579	0.80	-1.6
1,608,832	-		GFF1579	0.80	-0.1
1,608,832	-		GFF1579	0.80	-0.5
1,608,841	+		GFF1579	0.81	+0.0
1,608,843	-		GFF1579	0.81	+0.2
1,608,849	-		GFF1579	0.82	+0.9
1,608,856	+		GFF1579	0.82	+0.0
1,608,861	-		GFF1579	0.83	-0.0
1,608,869	-		GFF1579	0.83	+1.3
1,608,869	-		GFF1579	0.83	-0.7
1,608,881	+		GFF1579	0.84	-0.4
1,608,881	+		GFF1579	0.84	+0.1
1,608,881	+		GFF1579	0.84	-0.1
1,608,881	+		GFF1579	0.84	-0.2
1,608,881	+		GFF1579	0.84	-1.6
1,608,889	-		GFF1579	0.85	+0.4
1,608,904	-		GFF1579	0.86	-0.2
1,608,905	-		GFF1579	0.86	+0.2
1,608,958	+				-0.2
1,608,958	+				-0.2
1,608,958	+				+0.2
1,608,958	+				-0.5
1,608,958	+				-2.9
1,608,958	+				-0.6
1,608,958	+				+1.1
1,608,958	+				-1.9
1,608,958	+				+0.6
1,608,958	+				+0.0
1,608,958	+				+1.3
1,608,958	-				-0.8
1,608,960	+				-1.4
1,608,960	+				-1.9
1,608,961	-				+0.2
1,608,966	-				-0.7
1,608,966	-				+0.2
1,608,968	-				-0.6
1,608,968	-				+1.2
1,608,978	-				-1.0
1,608,988	-				-2.9
1,608,994	+				-1.3
1,608,994	+				+0.8
1,608,994	+				+0.5
1,609,001	-				+1.0
1,609,002	-				+0.0
1,609,002	-				+0.1
1,609,002	-				-1.2
1,609,018	-				+0.9
1,609,020	+				-0.5
1,609,033	+				-0.9
1,609,033	+				-2.2
1,609,059	-				-0.3
1,609,070	-				+1.3
1,609,083	+				+0.7
1,609,091	+				+0.9
1,609,091	-				+0.4
1,609,093	+				-0.8
1,609,093	+				-2.9
1,609,093	+				+0.5
1,609,101	-				-0.6
1,609,101	-				-1.9
1,609,101	-				+0.7
1,609,101	-				-1.6
1,609,108	+				-0.7
1,609,170	-				+0.4
1,609,196	+				-0.1
1,609,196	+				-0.4
1,609,201	+				-0.5
1,609,204	-				-2.2
1,609,204	-				-0.2
1,609,221	-				-0.5
1,609,224	+				-0.2
1,609,232	-				-0.5
1,609,232	-				-0.4
1,609,245	-				+0.8
1,609,262	+				-0.4
1,609,262	+				+0.1
1,609,262	+				+0.5
1,609,262	+				+0.6
1,609,262	+				-0.5
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