Strain Fitness in Sphingobium sp. HT1-2 around GFF1573

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,601,118	+		GFF1572	0.72	-0.9
1,601,118	+		GFF1572	0.72	+0.2
1,601,118	+		GFF1572	0.72	+0.1
1,601,118	+		GFF1572	0.72	+0.6
1,601,126	-		GFF1572	0.73	-0.8
1,601,141	-		GFF1572	0.73	+0.0
1,601,143	+		GFF1572	0.73	+0.1
1,601,143	+		GFF1572	0.73	-0.1
1,601,143	+		GFF1572	0.73	-0.4
1,601,143	+		GFF1572	0.73	-1.6
1,601,143	+		GFF1572	0.73	-0.8
1,601,143	+		GFF1572	0.73	+0.8
1,601,143	+		GFF1572	0.73	+1.2
1,601,143	+		GFF1572	0.73	-1.9
1,601,151	-		GFF1572	0.74	+1.5
1,601,151	-		GFF1572	0.74	+0.7
1,601,151	-		GFF1572	0.74	-0.1
1,601,151	-		GFF1572	0.74	-0.1
1,601,153	+		GFF1572	0.74	-1.8
1,601,153	+		GFF1572	0.74	-1.9
1,601,157	+		GFF1572	0.74	-2.2
1,601,157	+		GFF1572	0.74	-0.8
1,601,159	+		GFF1572	0.74	-0.1
1,601,161	-		GFF1572	0.74	-0.9
1,601,167	+		GFF1572	0.74	+0.1
1,601,167	+		GFF1572	0.74	+0.2
1,601,175	-		GFF1572	0.75	+0.3
1,601,175	-		GFF1572	0.75	-1.5
1,601,175	-		GFF1572	0.75	-1.1
1,601,175	-		GFF1572	0.75	-0.5
1,601,175	-		GFF1572	0.75	-0.4
1,601,177	+		GFF1572	0.75	-0.5
1,601,185	-		GFF1572	0.75	-0.4
1,601,204	+		GFF1572	0.76	+1.1
1,601,212	-		GFF1572	0.76	+0.8
1,601,212	-		GFF1572	0.76	-1.0
1,601,241	-		GFF1572	0.77	+0.4
1,601,254	+		GFF1572	0.78	+0.1
1,601,254	+		GFF1572	0.78	-1.7
1,601,254	+		GFF1572	0.78	-0.4
1,601,254	+		GFF1572	0.78	+0.6
1,601,254	-		GFF1572	0.78	-0.4
1,601,256	+		GFF1572	0.78	-2.5
1,601,259	+		GFF1572	0.78	-1.9
1,601,262	-		GFF1572	0.78	+0.3
1,601,262	-		GFF1572	0.78	-0.4
1,601,262	-		GFF1572	0.78	-0.2
1,601,262	-		GFF1572	0.78	+0.6
1,601,272	-		GFF1572	0.79	+0.7
1,601,275	-		GFF1572	0.79	-0.1
1,601,279	+		GFF1572	0.79	-1.0
1,601,281	-		GFF1572	0.79	+1.9
1,601,281	-		GFF1572	0.79	+0.0
1,601,287	+		GFF1572	0.79	-1.4
1,601,287	+		GFF1572	0.79	-1.0
1,601,300	-		GFF1572	0.80	-0.5
1,601,322	+		GFF1572	0.81	-0.7
1,601,322	+		GFF1572	0.81	-0.5
1,601,322	+		GFF1572	0.81	-0.4
1,601,322	+		GFF1572	0.81	-0.7
1,601,330	-		GFF1572	0.81	-1.9
1,601,330	-		GFF1572	0.81	-3.1
1,601,358	+		GFF1572	0.82	-0.3
1,601,358	+		GFF1572	0.82	+0.6
1,601,358	+		GFF1572	0.82	-1.4
1,601,363	+		GFF1572	0.83	-2.5
1,601,363	+		GFF1572	0.83	-0.6
1,601,366	-		GFF1572	0.83	+0.3
1,601,371	-		GFF1572	0.83	-1.2
1,601,419	+		GFF1572	0.85	+0.1
1,601,419	+		GFF1572	0.85	-1.8
1,601,429	+		GFF1572	0.85	-0.2
1,601,437	-		GFF1572	0.86	-0.8
1,601,437	-		GFF1572	0.86	-0.2
1,601,437	-		GFF1572	0.86	-0.6
1,601,448	+		GFF1572	0.86	+0.4
1,601,448	+		GFF1572	0.86	+0.1
1,601,448	+		GFF1572	0.86	-1.2
1,601,448	+		GFF1572	0.86	-2.7
1,601,448	+		GFF1572	0.86	+0.4
1,601,456	-		GFF1572	0.86	-2.2
1,601,456	-		GFF1572	0.86	+0.6
1,601,456	-		GFF1572	0.86	+0.5
1,601,456	-		GFF1572	0.86	+1.6
1,601,456	-		GFF1572	0.86	-1.4
1,601,456	-		GFF1572	0.86	-0.9
1,601,456	-		GFF1572	0.86	+0.2
1,601,456	-		GFF1572	0.86	-0.0
1,601,456	-		GFF1572	0.86	-0.9
1,601,456	-		GFF1572	0.86	+1.1
1,601,456	-		GFF1572	0.86	+0.3
1,601,486	-		GFF1572	0.88	-1.9
1,601,496	-		GFF1572	0.88	+0.6
1,601,496	-		GFF1572	0.88	-0.9
1,601,509	-		GFF1572	0.89	-0.3
1,601,519	+		GFF1572	0.89	+0.2
1,601,542	-				-1.0
1,601,554	+				-0.1
1,601,562	-				-1.3
1,601,567	-				+1.1
1,601,567	-				-1.3
1,601,569	-				+0.9
1,601,590	+				+0.8
1,601,598	-				-0.1
1,601,623	-				+0.6
1,601,656	-				+1.3
1,601,696	+				-1.1
1,601,698	+				-1.6
1,601,703	+				+0.4
1,601,703	+				+1.7
1,601,703	+				-1.9
1,601,703	+				+0.0
1,601,703	+				-0.4
1,601,703	+				+0.1
1,601,703	+				-0.4
1,601,703	+				+0.5
1,601,703	+				-0.9
1,601,703	+				-0.7
1,601,711	-				-1.0
1,601,711	-				+0.1
1,601,711	-				+2.0
1,601,711	-				-0.7
1,601,711	-				-0.6
1,601,711	-				-1.0
1,601,711	-				-0.9
1,601,711	-				+0.3
1,601,711	-				+0.1
1,601,730	+				+0.1
1,601,730	+				+1.0
1,601,738	-				-0.5
1,601,738	-				-0.6
1,601,738	-				+1.9
1,601,740	+				+0.6
1,601,740	+				-1.3
1,601,773	+				-1.7
1,601,773	+				-0.3
1,601,773	+				+0.3
1,601,774	+				-0.6
1,601,781	-				-1.0
1,601,786	+				-0.0
1,601,795	-				-0.5
1,601,817	-				+0.8
1,601,826	-				-0.7
1,601,826	-				-0.7
1,601,826	-				+1.2
1,601,826	-				+0.9
1,601,826	-				+0.6
1,601,833	+				-1.1
1,601,835	-				+0.0
1,601,843	-				-0.9
1,601,851	+				-0.9
1,601,853	+				-2.8
1,601,858	+				+0.8
1,601,859	+				+0.6
1,601,865	+				-0.6
1,601,865	+				-0.4
1,601,865	+				-0.4
1,601,873	-				-1.9
1,601,873	-				-1.2
1,601,886	+				+1.0
1,601,886	-				-0.9
1,601,891	+				-0.4
1,601,964	-				+1.3
1,602,050	+				-2.6
1,602,050	+				-2.7
1,602,055	+				+0.1
1,602,055	+				+0.6
1,602,055	+				-0.1
1,602,055	+				-0.7
1,602,055	+				-0.6
1,602,058	-				+1.3
1,602,058	-				+0.2
1,602,060	+				+0.7
1,602,060	+				-2.4
1,602,063	-				-1.2
1,602,063	-				-0.1
1,602,063	-				-1.9
1,602,063	-				-2.9
1,602,063	-				+0.5
1,602,063	-				-0.8
1,602,068	-				-0.7
1,602,068	-				+0.0
1,602,068	-				+0.3
1,602,113	-				-1.9
1,602,122	+				-0.2
1,602,147	-				-1.5
1,602,191	+		GFF1573	0.10	+0.8
1,602,225	+		GFF1573	0.15	-0.5
1,602,225	+		GFF1573	0.15	+0.2
1,602,256	-		GFF1573	0.19	-1.6
1,602,268	-		GFF1573	0.20	+1.3
1,602,311	+		GFF1573	0.26	+0.0
1,602,366	-		GFF1573	0.33	-1.4
1,602,389	-		GFF1573	0.36	-0.1
1,602,389	-		GFF1573	0.36	-0.4
1,602,389	-		GFF1573	0.36	-0.4
1,602,394	+		GFF1573	0.36	-0.0
1,602,422	+		GFF1573	0.40	+0.7
1,602,422	+		GFF1573	0.40	-2.1
1,602,422	+		GFF1573	0.40	-0.8
1,602,430	-		GFF1573	0.41	+0.6
1,602,472	-		GFF1573	0.46	-0.2
1,602,492	+		GFF1573	0.49	-0.7
1,602,499	-		GFF1573	0.50	-1.5
1,602,509	-		GFF1573	0.51	-1.3
1,602,528	+		GFF1573	0.54	-0.2
1,602,536	-		GFF1573	0.55	-0.2
1,602,585	-		GFF1573	0.61	+0.1
1,602,585	-		GFF1573	0.61	-0.5
1,602,600	+		GFF1573	0.63	-0.3
1,602,617	+		GFF1573	0.65	-0.4
1,602,627	+		GFF1573	0.66	+0.0
1,602,724	+		GFF1573	0.79	-0.8
1,602,732	-		GFF1573	0.80	+1.2
1,602,732	-		GFF1573	0.80	-1.0
1,602,732	-		GFF1573	0.80	+1.4
1,602,732	-		GFF1573	0.80	-0.8
1,602,734	+		GFF1573	0.80	+0.6
1,602,734	+		GFF1573	0.80	-2.4
1,602,735	+		GFF1573	0.80	-0.2
1,602,742	-		GFF1573	0.81	+1.1
1,602,742	-		GFF1573	0.81	+1.6
1,602,747	-		GFF1573	0.82	-1.2
1,602,778	+		GFF1573	0.86	+0.8
1,602,792	+		GFF1573	0.88	+0.4
1,602,810	-		GFF1573	0.90	-0.2
1,602,817	-				+0.4
1,602,896	+				-0.1
1,602,904	-				-0.6
1,602,904	-				+1.0
1,602,909	-				-0.3
1,602,915	+				-0.9
1,602,946	-				+0.6
1,603,002	-				-0.6
1,603,007	-				-2.0
1,603,009	+				-0.1
1,603,017	-				-0.7
1,603,017	-				-0.7
1,603,034	-				-2.0
1,603,039	+				-1.4
1,603,039	+				-1.8
1,603,047	-				-2.8
1,603,047	-				-0.6
1,603,047	-				+0.5
1,603,047	-				+2.0
1,603,047	-				-2.9
1,603,047	-				-1.9
1,603,047	-				-1.4
1,603,129	-		GFF1574	0.18	-0.2
1,603,184	-		GFF1574	0.25	-0.2
1,603,185	-		GFF1574	0.25	-0.1
1,603,190	-		GFF1574	0.25	-0.4
1,603,190	-		GFF1574	0.25	-0.1
1,603,210	-		GFF1574	0.28	+0.3
1,603,217	-		GFF1574	0.28	+0.9
1,603,235	+		GFF1574	0.30	-1.8
1,603,243	-		GFF1574	0.31	-1.6
1,603,243	-		GFF1574	0.31	-0.5
1,603,267	-		GFF1574	0.34	-0.9
1,603,267	-		GFF1574	0.34	+1.5
1,603,269	+		GFF1574	0.34	-0.5
1,603,271	+		GFF1574	0.35	+0.8
1,603,271	+		GFF1574	0.35	-0.2
1,603,271	+		GFF1574	0.35	+0.9
1,603,271	+		GFF1574	0.35	-2.2
1,603,271	+		GFF1574	0.35	-3.8
1,603,271	+		GFF1574	0.35	-0.4
1,603,271	+		GFF1574	0.35	-1.6
1,603,271	+		GFF1574	0.35	-0.7
1,603,277	-		GFF1574	0.35	-0.1
1,603,277	-		GFF1574	0.35	-0.3
1,603,277	-		GFF1574	0.35	-1.4
1,603,277	-		GFF1574	0.35	-1.2
1,603,279	-		GFF1574	0.36	-1.9
1,603,279	-		GFF1574	0.36	+0.1
1,603,279	-		GFF1574	0.36	-1.4
1,603,326	-		GFF1574	0.41	+0.1
1,603,372	+		GFF1574	0.46	-0.4
1,603,399	-		GFF1574	0.49	-0.1
1,603,442	+		GFF1574	0.54	+0.7
1,603,461	+		GFF1574	0.57	-1.7
1,603,469	+		GFF1574	0.58	-0.7
1,603,469	+		GFF1574	0.58	-2.4
1,603,469	+		GFF1574	0.58	-2.1
1,603,469	-		GFF1574	0.58	-2.6
1,603,477	-		GFF1574	0.59	+0.4
1,603,477	-		GFF1574	0.59	-1.8
1,603,495	+		GFF1574	0.61	+0.2
1,603,512	-		GFF1574	0.63	+1.0
1,603,533	-		GFF1574	0.65	-0.8
1,603,573	-		GFF1574	0.70	-0.9
1,603,607	+		GFF1574	0.74	-1.2
1,603,608	-		GFF1574	0.74	-1.1
1,603,612	+		GFF1574	0.74	-1.4
1,603,620	-		GFF1574	0.75	-0.4
1,603,641	-		GFF1574	0.78	+0.1
1,603,660	-		GFF1574	0.80	+0.7
1,603,666	-		GFF1574	0.80	-1.9
1,603,673	+		GFF1574	0.81	-1.9
1,603,673	+		GFF1574	0.81	-0.9
1,603,700	-		GFF1574	0.84	-0.5
1,603,711	+		GFF1574	0.86	-0.6
1,603,716	+		GFF1574	0.86	-1.0
1,603,724	-		GFF1574	0.87	-0.9
1,603,724	-		GFF1574	0.87	-0.6
1,603,753	-				-0.0
1,603,763	+				-0.4
1,603,775	-				-1.0
1,603,804	+				-0.0
1,603,805	-				+0.6
1,603,809	+				+0.6
1,603,817	-				-0.6
1,603,817	-				-1.8