Strain Fitness in Sphingobium sp. HT1-2 around GFF1535

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,566,331	+				+0.5
1,566,339	-				-2.1
1,566,364	-				+0.6
1,566,364	-				-3.2
1,566,364	-				-0.4
1,566,365	-				-0.3
1,566,366	+				+2.0
1,566,366	+				-0.1
1,566,371	+				+1.1
1,566,371	+				-0.0
1,566,374	-				-0.4
1,566,379	-				+1.2
1,566,386	+				-2.5
1,566,386	+				+0.0
1,566,386	+				-0.0
1,566,386	+				-0.8
1,566,386	+				-1.7
1,566,386	+				+0.2
1,566,386	+				+0.4
1,566,394	+				-0.5
1,566,394	+				+0.7
1,566,394	-				-0.2
1,566,394	-				+0.9
1,566,394	-				-0.4
1,566,394	-				-0.3
1,566,394	-				-0.4
1,566,394	-				+0.4
1,566,394	-				+0.7
1,566,404	-				+0.9
1,566,409	-				-0.2
1,566,415	+				-1.6
1,566,434	-				-0.1
1,566,471	+				-2.0
1,566,479	-				-0.4
1,566,490	+				+0.4
1,566,535	-				+0.4
1,566,540	-				-1.4
1,566,547	+		GFF1534	0.11	+0.5
1,566,547	+		GFF1534	0.11	+1.4
1,566,547	+		GFF1534	0.11	+1.0
1,566,547	+		GFF1534	0.11	+0.2
1,566,555	-		GFF1534	0.13	-0.4
1,566,590	+		GFF1534	0.22	-0.6
1,566,633	-		GFF1534	0.33	-0.9
1,566,658	+		GFF1534	0.39	+1.2
1,566,664	-		GFF1534	0.41	-0.5
1,566,670	+		GFF1534	0.42	+0.8
1,566,671	-		GFF1534	0.43	-0.3
1,566,678	-		GFF1534	0.44	+0.3
1,566,706	+		GFF1534	0.52	+0.8
1,566,706	+		GFF1534	0.52	-0.1
1,566,706	+		GFF1534	0.52	-1.2
1,566,714	-		GFF1534	0.54	-0.3
1,566,714	-		GFF1534	0.54	+0.9
1,566,714	-		GFF1534	0.54	-0.5
1,566,714	-		GFF1534	0.54	+0.4
1,566,714	-		GFF1534	0.54	+1.0
1,566,730	+		GFF1534	0.58	-0.6
1,566,735	+		GFF1534	0.59	-0.6
1,566,743	-		GFF1534	0.61	+0.3
1,566,743	-		GFF1534	0.61	-0.4
1,566,743	-		GFF1534	0.61	+1.3
1,566,758	+		GFF1534	0.65	-0.2
1,566,770	+		GFF1534	0.68	+1.8
1,566,819	+		GFF1534	0.81	+0.4
1,566,819	+		GFF1534	0.81	-1.0
1,566,827	-		GFF1534	0.83	-1.5
1,566,835	-		GFF1534	0.85	+0.6
1,566,837	-		GFF1534	0.85	-1.0
1,566,843	+		GFF1534	0.87	+0.1
1,566,874	-				-1.4
1,566,888	+				+0.8
1,566,888	+				-1.2
1,566,913	+				+0.8
1,566,927	+				+0.0
1,566,927	+				-1.5
1,566,939	+				+0.9
1,566,986	-				+1.4
1,566,989	+				+0.1
1,566,994	+				-1.1
1,566,997	-				+0.8
1,566,999	+				+0.4
1,566,999	+				-0.0
1,567,002	-				+0.5
1,567,022	-				+0.4
1,567,055	-				+0.0
1,567,098	+				-0.3
1,567,106	-				+0.6
1,567,106	-				-0.6
1,567,178	+				-0.3
1,567,178	+				+0.6
1,567,178	+				-1.0
1,567,195	+				+0.7
1,567,198	+				-1.5
1,567,206	-				+0.5
1,567,221	-		GFF1535	0.10	+0.7
1,567,221	-		GFF1535	0.10	-1.8
1,567,238	+		GFF1535	0.12	+0.4
1,567,240	-		GFF1535	0.12	+0.0
1,567,249	+		GFF1535	0.13	-0.6
1,567,262	+		GFF1535	0.14	+0.1
1,567,262	+		GFF1535	0.14	-1.6
1,567,262	+		GFF1535	0.14	-1.9
1,567,263	+		GFF1535	0.14	-1.5
1,567,265	-		GFF1535	0.14	-2.2
1,567,265	-		GFF1535	0.14	+1.0
1,567,265	-		GFF1535	0.14	+0.4
1,567,265	-		GFF1535	0.14	+0.8
1,567,270	-		GFF1535	0.15	-1.4
1,567,272	-		GFF1535	0.15	-1.2
1,567,286	-		GFF1535	0.16	-1.4
1,567,313	+		GFF1535	0.19	-0.0
1,567,321	+		GFF1535	0.20	+0.4
1,567,321	-		GFF1535	0.20	+0.5
1,567,323	+		GFF1535	0.20	-1.9
1,567,331	+		GFF1535	0.21	+0.2
1,567,331	+		GFF1535	0.21	-0.5
1,567,337	-		GFF1535	0.21	+0.0
1,567,410	-		GFF1535	0.28	+0.3
1,567,413	-		GFF1535	0.28	+0.3
1,567,415	+		GFF1535	0.29	+0.2
1,567,431	-		GFF1535	0.30	+0.2
1,567,438	+		GFF1535	0.31	-3.3
1,567,438	+		GFF1535	0.31	-1.0
1,567,445	+		GFF1535	0.32	-0.6
1,567,448	+		GFF1535	0.32	-0.8
1,567,458	+		GFF1535	0.33	+0.3
1,567,465	+		GFF1535	0.33	-0.1
1,567,482	+		GFF1535	0.35	-0.2
1,567,491	-		GFF1535	0.36	-0.1
1,567,493	+		GFF1535	0.36	-1.7
1,567,493	+		GFF1535	0.36	-0.1
1,567,493	+		GFF1535	0.36	-2.6
1,567,493	+		GFF1535	0.36	-0.9
1,567,501	-		GFF1535	0.37	+0.2
1,567,501	-		GFF1535	0.37	+0.3
1,567,501	-		GFF1535	0.37	-0.4
1,567,519	+		GFF1535	0.39	+1.5
1,567,519	+		GFF1535	0.39	+0.5
1,567,532	-		GFF1535	0.40	-0.2
1,567,532	-		GFF1535	0.40	+1.0
1,567,537	-		GFF1535	0.40	-0.6
1,567,566	-		GFF1535	0.43	-1.4
1,567,571	+		GFF1535	0.44	+0.2
1,567,573	+		GFF1535	0.44	+0.5
1,567,578	+		GFF1535	0.44	+0.7
1,567,579	-		GFF1535	0.44	-1.4
1,567,579	-		GFF1535	0.44	+0.8
1,567,579	-		GFF1535	0.44	-2.8
1,567,579	-		GFF1535	0.44	+0.4
1,567,581	-		GFF1535	0.45	-1.0
1,567,581	-		GFF1535	0.45	+0.2
1,567,586	-		GFF1535	0.45	-0.4
1,567,586	-		GFF1535	0.45	+0.6
1,567,586	-		GFF1535	0.45	+1.1
1,567,586	-		GFF1535	0.45	-1.5
1,567,613	+		GFF1535	0.48	-0.7
1,567,646	+		GFF1535	0.51	+0.5
1,567,647	-		GFF1535	0.51	+0.1
1,567,652	-		GFF1535	0.51	-0.2
1,567,667	+		GFF1535	0.53	+1.1
1,567,667	+		GFF1535	0.53	-0.9
1,567,693	+		GFF1535	0.55	+0.2
1,567,727	+		GFF1535	0.59	-0.2
1,567,730	-		GFF1535	0.59	+1.0
1,567,732	+		GFF1535	0.59	+1.4
1,567,747	+		GFF1535	0.60	+0.0
1,567,747	+		GFF1535	0.60	+0.4
1,567,755	-		GFF1535	0.61	-1.0
1,567,755	-		GFF1535	0.61	+0.7
1,567,755	-		GFF1535	0.61	-0.5
1,567,757	+		GFF1535	0.61	-0.2
1,567,769	-		GFF1535	0.63	-0.6
1,567,793	-		GFF1535	0.65	-0.0
1,567,798	-		GFF1535	0.65	+0.4
1,567,812	-		GFF1535	0.67	-1.1
1,567,831	+		GFF1535	0.68	-1.4
1,567,839	-		GFF1535	0.69	+0.6
1,567,839	-		GFF1535	0.69	-0.2
1,567,879	+		GFF1535	0.73	-0.4
1,567,879	+		GFF1535	0.73	-1.5
1,567,897	-		GFF1535	0.75	+0.7
1,567,897	-		GFF1535	0.75	-1.8
1,567,897	-		GFF1535	0.75	-0.1
1,567,914	-		GFF1535	0.76	-0.2
1,567,924	+		GFF1535	0.77	+1.0
1,567,924	+		GFF1535	0.77	-0.7
1,567,924	+		GFF1535	0.77	-0.7
1,567,929	+		GFF1535	0.78	-1.0
1,567,932	-		GFF1535	0.78	-1.9
1,567,937	-		GFF1535	0.79	-1.6
1,567,960	-		GFF1535	0.81	+0.5
1,567,965	+		GFF1535	0.81	+0.7
1,567,969	+		GFF1535	0.82	-0.1
1,567,970	-		GFF1535	0.82	+0.9
1,567,973	-		GFF1535	0.82	+0.6
1,567,976	+		GFF1535	0.82	-1.9
1,567,979	+		GFF1535	0.83	-0.0
1,568,006	-		GFF1535	0.85	-0.2
1,568,008	+		GFF1535	0.85	+1.2
1,568,017	-		GFF1535	0.86	-0.2
1,568,020	-		GFF1535	0.87	+1.0
1,568,036	-		GFF1535	0.88	+0.5
1,568,075	+				-0.1
1,568,087	+				-1.6
1,568,094	+				+0.4
1,568,095	-				-0.3
1,568,095	-				-1.7
1,568,096	-				+0.8
1,568,119	+				-1.2
1,568,129	-				+0.5
1,568,144	+				-1.7
1,568,152	-				-0.4
1,568,153	+				-0.6
1,568,161	-				+0.4
1,568,163	+				+0.4
1,568,166	-				-1.0
1,568,197	+				-0.4
1,568,214	+				-0.1
1,568,219	+				-0.8
1,568,219	+				+0.0
1,568,227	-				-0.5
1,568,227	-				-0.1
1,568,229	+				-2.4
1,568,229	+				+0.7
1,568,234	+				-1.8
1,568,234	+				-0.1
1,568,234	+				+1.5
1,568,242	-				+0.2
1,568,242	-				+0.8
1,568,242	-				+1.5
1,568,244	+				+0.4
1,568,282	-				-0.6
1,568,324	+				-0.5
1,568,408	-		GFF1536	0.10	-0.4
1,568,412	+		GFF1536	0.10	+0.7
1,568,435	-		GFF1536	0.13	+0.7
1,568,453	+		GFF1536	0.14	+0.3
1,568,453	+		GFF1536	0.14	-1.7
1,568,453	+		GFF1536	0.14	-0.6
1,568,453	+		GFF1536	0.14	+1.0
1,568,453	+		GFF1536	0.14	-0.1
1,568,453	+		GFF1536	0.14	+0.6
1,568,461	-		GFF1536	0.15	-2.4
1,568,461	-		GFF1536	0.15	-0.1
1,568,461	-		GFF1536	0.15	-0.9
1,568,461	-		GFF1536	0.15	+0.2
1,568,461	-		GFF1536	0.15	-1.8
1,568,461	-		GFF1536	0.15	+1.4
1,568,462	-		GFF1536	0.15	-0.7
1,568,470	-		GFF1536	0.16	-1.0
1,568,489	+		GFF1536	0.18	-1.5
1,568,489	+		GFF1536	0.18	+0.8
1,568,491	-		GFF1536	0.18	-1.2
1,568,504	-		GFF1536	0.19	-0.1
1,568,514	-		GFF1536	0.20	-0.5
1,568,528	+		GFF1536	0.22	+0.8
1,568,534	-		GFF1536	0.22	-2.8
1,568,557	-		GFF1536	0.24	+0.5
1,568,562	+		GFF1536	0.25	-1.1
1,568,576	+		GFF1536	0.26	-0.4
1,568,592	+		GFF1536	0.28	+0.2
1,568,592	+		GFF1536	0.28	-0.8
1,568,600	-		GFF1536	0.29	+1.6
1,568,618	+		GFF1536	0.30	-0.5
1,568,626	-		GFF1536	0.31	-1.2
1,568,628	+		GFF1536	0.31	-1.5
1,568,631	-		GFF1536	0.32	+0.6
1,568,636	-		GFF1536	0.32	-0.9
1,568,636	-		GFF1536	0.32	-1.6
1,568,653	+		GFF1536	0.34	-0.5
1,568,658	-		GFF1536	0.34	-1.9
1,568,669	-		GFF1536	0.35	-1.0
1,568,669	-		GFF1536	0.35	-0.0
1,568,673	+		GFF1536	0.36	+0.9
1,568,690	+		GFF1536	0.37	-0.6
1,568,698	-		GFF1536	0.38	-0.9
1,568,706	+		GFF1536	0.39	+0.5
1,568,749	+		GFF1536	0.43	+0.4
1,568,749	+		GFF1536	0.43	+1.0
1,568,749	+		GFF1536	0.43	-0.1
1,568,749	+		GFF1536	0.43	+0.4
1,568,757	-		GFF1536	0.44	-2.1
1,568,764	+		GFF1536	0.44	-1.7
1,568,779	+		GFF1536	0.46	-1.7
1,568,779	+		GFF1536	0.46	+0.5
1,568,787	-		GFF1536	0.47	-1.0
1,568,787	-		GFF1536	0.47	-2.1
1,568,787	-		GFF1536	0.47	+0.2
1,568,789	+		GFF1536	0.47	+0.4
1,568,843	+		GFF1536	0.52	+0.8
1,568,849	+		GFF1536	0.53	-1.9
1,568,849	+		GFF1536	0.53	+1.9
1,568,852	-		GFF1536	0.53	-0.5
1,568,852	-		GFF1536	0.53	-1.6
1,568,857	-		GFF1536	0.53	+0.3
1,568,879	+		GFF1536	0.55	+1.8
1,568,903	-		GFF1536	0.58	+0.2
1,568,904	-		GFF1536	0.58	+0.6
1,568,922	-		GFF1536	0.60	+0.6
1,568,951	+		GFF1536	0.62	-0.4
1,568,979	-		GFF1536	0.65	+1.0
1,569,016	+		GFF1536	0.69	+0.1
1,569,034	-		GFF1536	0.70	+0.0
1,569,071	-		GFF1536	0.74	-1.1
1,569,082	+		GFF1536	0.75	+1.6
1,569,083	+		GFF1536	0.75	+0.2
1,569,083	+		GFF1536	0.75	-0.3
1,569,091	-		GFF1536	0.76	+1.6
1,569,113	+		GFF1536	0.78	-0.2
1,569,113	+		GFF1536	0.78	+1.4
1,569,113	+		GFF1536	0.78	+0.1
1,569,119	-		GFF1536	0.79	-0.9
1,569,124	+		GFF1536	0.79	-1.4
1,569,128	+		GFF1536	0.79	+0.8
1,569,128	+		GFF1536	0.79	-1.6
1,569,128	+		GFF1536	0.79	-1.0
1,569,136	-		GFF1536	0.80	+0.0
1,569,141	+		GFF1536	0.81	+0.9
1,569,142	-		GFF1536	0.81	-0.9
1,569,147	-		GFF1536	0.81	-0.1
1,569,159	-		GFF1536	0.82	-0.2