Strain Fitness in Sphingobium sp. HT1-2 around GFF1533

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,563,022	-				+0.2
1,563,022	-				-2.3
1,563,084	+				+0.6
1,563,101	+				-2.7
1,563,101	+				+0.5
1,563,106	+				+0.4
1,563,115	+				-0.2
1,563,128	+				-1.1
1,563,128	+				-1.3
1,563,138	+		GFF1532	0.11	-0.9
1,563,143	+		GFF1532	0.12	+0.0
1,563,146	-		GFF1532	0.12	-1.0
1,563,147	+		GFF1532	0.12	+0.0
1,563,155	-		GFF1532	0.13	-1.0
1,563,184	+		GFF1532	0.17	+0.6
1,563,203	+		GFF1532	0.20	-1.4
1,563,203	+		GFF1532	0.20	-1.6
1,563,211	-		GFF1532	0.21	-1.4
1,563,211	-		GFF1532	0.21	-0.6
1,563,211	-		GFF1532	0.21	-0.6
1,563,245	+		GFF1532	0.26	-1.2
1,563,246	-		GFF1532	0.26	-2.8
1,563,252	+		GFF1532	0.27	-0.0
1,563,263	+		GFF1532	0.28	-0.3
1,563,270	+		GFF1532	0.29	-1.1
1,563,271	-		GFF1532	0.29	+0.6
1,563,272	-		GFF1532	0.30	+0.4
1,563,279	-		GFF1532	0.31	-0.6
1,563,304	-		GFF1532	0.34	-1.3
1,563,331	-		GFF1532	0.38	+0.6
1,563,336	+		GFF1532	0.38	-0.2
1,563,341	+		GFF1532	0.39	+0.4
1,563,349	-		GFF1532	0.40	-1.2
1,563,349	-		GFF1532	0.40	-0.7
1,563,349	-		GFF1532	0.40	-1.2
1,563,360	+		GFF1532	0.42	-0.3
1,563,366	-		GFF1532	0.43	-0.8
1,563,379	+		GFF1532	0.44	-1.9
1,563,389	+		GFF1532	0.46	-0.8
1,563,392	+		GFF1532	0.46	-1.1
1,563,392	-		GFF1532	0.46	-0.5
1,563,400	-		GFF1532	0.47	+0.5
1,563,411	+		GFF1532	0.49	+0.1
1,563,411	+		GFF1532	0.49	+0.4
1,563,419	-		GFF1532	0.50	-0.8
1,563,419	-		GFF1532	0.50	+0.6
1,563,419	-		GFF1532	0.50	-0.8
1,563,419	-		GFF1532	0.50	+0.8
1,563,419	-		GFF1532	0.50	+0.7
1,563,434	+		GFF1532	0.52	-2.9
1,563,453	-		GFF1532	0.55	-0.5
1,563,457	+		GFF1532	0.55	-0.3
1,563,465	-		GFF1532	0.56	-0.5
1,563,514	-		GFF1532	0.63	-0.2
1,563,516	+		GFF1532	0.63	-0.4
1,563,535	+		GFF1532	0.66	-0.5
1,563,561	+		GFF1532	0.70	-0.8
1,563,569	-		GFF1532	0.71	-0.7
1,563,574	+		GFF1532	0.71	-0.1
1,563,579	+		GFF1532	0.72	-0.6
1,563,584	+		GFF1532	0.73	+0.9
1,563,584	+		GFF1532	0.73	-0.7
1,563,584	+		GFF1532	0.73	+0.0
1,563,584	-		GFF1532	0.73	-0.2
1,563,589	+		GFF1532	0.73	-0.3
1,563,589	+		GFF1532	0.73	+0.5
1,563,589	+		GFF1532	0.73	+0.5
1,563,589	+		GFF1532	0.73	-0.0
1,563,589	+		GFF1532	0.73	-0.1
1,563,589	+		GFF1532	0.73	-1.5
1,563,589	+		GFF1532	0.73	+0.3
1,563,597	-		GFF1532	0.75	+0.5
1,563,597	-		GFF1532	0.75	-1.4
1,563,597	-		GFF1532	0.75	+1.6
1,563,597	-		GFF1532	0.75	-1.4
1,563,602	-		GFF1532	0.75	+0.5
1,563,602	-		GFF1532	0.75	+0.4
1,563,646	-		GFF1532	0.81	+1.0
1,563,653	-		GFF1532	0.82	-0.6
1,563,653	-		GFF1532	0.82	+0.5
1,563,657	+		GFF1532	0.83	-0.3
1,563,669	+		GFF1532	0.85	+0.4
1,563,706	+		GFF1532	0.90	-1.5
1,563,745	+				-0.4
1,563,745	+				-0.6
1,563,753	-				+0.6
1,563,753	-				-0.9
1,563,753	-				-0.7
1,563,774	+				-0.4
1,563,782	-				+0.1
1,563,795	+				+0.6
1,563,795	+				-0.3
1,563,801	+				-0.7
1,563,803	-				-1.4
1,563,803	-				-0.9
1,563,828	-				-2.8
1,563,851	-				-0.1
1,563,854	+				-1.0
1,563,862	-				+0.1
1,563,862	-				-0.1
1,563,868	-				-0.0
1,564,038	-				-2.2
1,564,044	+				-0.4
1,564,094	+				-0.7
1,564,094	+				+0.2
1,564,094	+				-1.5
1,564,094	+				-0.7
1,564,102	-				-1.5
1,564,106	+				-1.6
1,564,108	+				+1.4
1,564,126	-				-1.4
1,564,218	-				+0.5
1,564,283	+		GFF1533	0.12	+0.4
1,564,317	+		GFF1533	0.13	-0.8
1,564,317	+		GFF1533	0.13	+1.2
1,564,345	+		GFF1533	0.14	+0.2
1,564,407	+		GFF1533	0.17	-1.6
1,564,407	+		GFF1533	0.17	+0.7
1,564,435	+		GFF1533	0.18	-0.7
1,564,435	+		GFF1533	0.18	-0.3
1,564,526	+		GFF1533	0.22	+0.4
1,564,761	+		GFF1533	0.32	-0.2
1,564,784	+		GFF1533	0.33	-1.5
1,564,792	-		GFF1533	0.33	-1.4
1,564,842	+		GFF1533	0.35	+0.8
1,564,963	+		GFF1533	0.40	-1.4
1,565,167	+		GFF1533	0.49	-1.5
1,565,167	+		GFF1533	0.49	-1.4
1,565,167	+		GFF1533	0.49	+0.3
1,565,175	-		GFF1533	0.49	-1.4
1,565,175	-		GFF1533	0.49	+1.1
1,565,177	+		GFF1533	0.50	-1.2
1,565,177	+		GFF1533	0.50	-0.6
1,565,260	+		GFF1533	0.53	+0.2
1,565,364	+		GFF1533	0.58	-1.2
1,565,364	+		GFF1533	0.58	+0.4
1,565,427	+		GFF1533	0.60	-0.1
1,565,427	+		GFF1533	0.60	-0.4
1,565,427	+		GFF1533	0.60	-1.5
1,565,427	+		GFF1533	0.60	-1.2
1,565,484	+		GFF1533	0.63	-0.8
1,565,527	+		GFF1533	0.64	+0.6
1,565,549	+		GFF1533	0.65	-0.5
1,565,573	+		GFF1533	0.66	+1.4
1,565,675	+		GFF1533	0.71	+0.0
1,565,822	+		GFF1533	0.77	-0.3
1,566,030	+		GFF1533	0.86	-1.5
1,566,088	-		GFF1533	0.88	-0.4
1,566,095	-		GFF1533	0.89	-2.6
1,566,331	+				+0.5
1,566,339	-				-2.1
1,566,364	-				+0.6
1,566,364	-				-3.2
1,566,364	-				-0.4
1,566,365	-				-0.3
1,566,366	+				+2.0
1,566,366	+				-0.1
1,566,371	+				+1.1
1,566,371	+				-0.0
1,566,374	-				-0.4
1,566,379	-				+1.2
1,566,386	+				-2.5
1,566,386	+				+0.0
1,566,386	+				-0.0
1,566,386	+				-0.8
1,566,386	+				-1.7
1,566,386	+				+0.2
1,566,386	+				+0.4
1,566,394	+				-0.5
1,566,394	+				+0.7
1,566,394	-				-0.2
1,566,394	-				+0.9
1,566,394	-				-0.4
1,566,394	-				-0.3
1,566,394	-				-0.4
1,566,394	-				+0.4
1,566,394	-				+0.7
1,566,404	-				+0.9
1,566,409	-				-0.2
1,566,415	+				-1.6
1,566,434	-				-0.1
1,566,471	+				-2.0
1,566,479	-				-0.4
1,566,490	+				+0.4
1,566,535	-				+0.4
1,566,540	-				-1.4
1,566,547	+		GFF1534	0.11	+0.5
1,566,547	+		GFF1534	0.11	+1.4
1,566,547	+		GFF1534	0.11	+1.0
1,566,547	+		GFF1534	0.11	+0.2
1,566,555	-		GFF1534	0.13	-0.4
1,566,590	+		GFF1534	0.22	-0.6
1,566,633	-		GFF1534	0.33	-0.9
1,566,658	+		GFF1534	0.39	+1.2
1,566,664	-		GFF1534	0.41	-0.5
1,566,670	+		GFF1534	0.42	+0.8
1,566,671	-		GFF1534	0.43	-0.3
1,566,678	-		GFF1534	0.44	+0.3
1,566,706	+		GFF1534	0.52	+0.8
1,566,706	+		GFF1534	0.52	-0.1
1,566,706	+		GFF1534	0.52	-1.2
1,566,714	-		GFF1534	0.54	-0.3
1,566,714	-		GFF1534	0.54	+0.9
1,566,714	-		GFF1534	0.54	-0.5
1,566,714	-		GFF1534	0.54	+0.4
1,566,714	-		GFF1534	0.54	+1.0
1,566,730	+		GFF1534	0.58	-0.6
1,566,735	+		GFF1534	0.59	-0.6
1,566,743	-		GFF1534	0.61	+0.3
1,566,743	-		GFF1534	0.61	-0.4
1,566,743	-		GFF1534	0.61	+1.3
1,566,758	+		GFF1534	0.65	-0.2
1,566,770	+		GFF1534	0.68	+1.8
1,566,819	+		GFF1534	0.81	+0.4
1,566,819	+		GFF1534	0.81	-1.0
1,566,827	-		GFF1534	0.83	-1.5
1,566,835	-		GFF1534	0.85	+0.6
1,566,837	-		GFF1534	0.85	-1.0
1,566,843	+		GFF1534	0.87	+0.1
1,566,874	-				-1.4
1,566,888	+				+0.8
1,566,888	+				-1.2
1,566,913	+				+0.8
1,566,927	+				+0.0
1,566,927	+				-1.5
1,566,939	+				+0.9
1,566,986	-				+1.4
1,566,989	+				+0.1
1,566,994	+				-1.1
1,566,997	-				+0.8
1,566,999	+				+0.4
1,566,999	+				-0.0
1,567,002	-				+0.5
1,567,022	-				+0.4
1,567,055	-				+0.0
1,567,098	+				-0.3
1,567,106	-				+0.6
1,567,106	-				-0.6
1,567,178	+				-0.3
1,567,178	+				+0.6
1,567,178	+				-1.0
1,567,195	+				+0.7
1,567,198	+				-1.5
1,567,206	-				+0.5
1,567,221	-		GFF1535	0.10	+0.7
1,567,221	-		GFF1535	0.10	-1.8
1,567,238	+		GFF1535	0.12	+0.4
1,567,240	-		GFF1535	0.12	+0.0
1,567,249	+		GFF1535	0.13	-0.6
1,567,262	+		GFF1535	0.14	+0.1
1,567,262	+		GFF1535	0.14	-1.6
1,567,262	+		GFF1535	0.14	-1.9
1,567,263	+		GFF1535	0.14	-1.5
1,567,265	-		GFF1535	0.14	-2.2
1,567,265	-		GFF1535	0.14	+1.0
1,567,265	-		GFF1535	0.14	+0.4
1,567,265	-		GFF1535	0.14	+0.8
1,567,270	-		GFF1535	0.15	-1.4
1,567,272	-		GFF1535	0.15	-1.2
1,567,286	-		GFF1535	0.16	-1.4
1,567,313	+		GFF1535	0.19	-0.0
1,567,321	+		GFF1535	0.20	+0.4
1,567,321	-		GFF1535	0.20	+0.5
1,567,323	+		GFF1535	0.20	-1.9
1,567,331	+		GFF1535	0.21	+0.2
1,567,331	+		GFF1535	0.21	-0.5
1,567,337	-		GFF1535	0.21	+0.0