Strain Fitness in Sphingobium sp. HT1-2 around GFF1532

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,562,065	+		GFF1531	0.44	-0.7
1,562,066	-		GFF1531	0.44	-1.5
1,562,082	+		GFF1531	0.45	-0.7
1,562,087	+		GFF1531	0.45	+1.2
1,562,090	-		GFF1531	0.45	-0.3
1,562,090	-		GFF1531	0.45	+0.9
1,562,090	-		GFF1531	0.45	-0.4
1,562,090	-		GFF1531	0.45	+0.3
1,562,090	-		GFF1531	0.45	-1.8
1,562,092	+		GFF1531	0.46	+0.8
1,562,095	-		GFF1531	0.46	-1.0
1,562,129	+		GFF1531	0.48	-2.1
1,562,129	+		GFF1531	0.48	-0.3
1,562,129	+		GFF1531	0.48	-0.8
1,562,129	+		GFF1531	0.48	-1.5
1,562,129	+		GFF1531	0.48	-0.9
1,562,129	+		GFF1531	0.48	+2.1
1,562,129	+		GFF1531	0.48	-0.1
1,562,129	+		GFF1531	0.48	-1.9
1,562,129	+		GFF1531	0.48	+0.1
1,562,129	+		GFF1531	0.48	+0.7
1,562,132	-		GFF1531	0.48	-0.5
1,562,137	-		GFF1531	0.49	+1.1
1,562,137	-		GFF1531	0.49	-0.3
1,562,137	-		GFF1531	0.49	+0.9
1,562,137	-		GFF1531	0.49	-1.5
1,562,137	-		GFF1531	0.49	+1.3
1,562,137	-		GFF1531	0.49	-0.2
1,562,137	-		GFF1531	0.49	+0.7
1,562,143	+		GFF1531	0.49	+0.2
1,562,143	+		GFF1531	0.49	-0.2
1,562,151	-		GFF1531	0.50	+0.8
1,562,151	-		GFF1531	0.50	-1.1
1,562,151	-		GFF1531	0.50	-0.0
1,562,151	-		GFF1531	0.50	-1.2
1,562,166	+		GFF1531	0.51	+0.4
1,562,166	+		GFF1531	0.51	+0.1
1,562,166	+		GFF1531	0.51	-1.4
1,562,166	+		GFF1531	0.51	-1.2
1,562,166	+		GFF1531	0.51	-1.6
1,562,166	+		GFF1531	0.51	-0.1
1,562,166	+		GFF1531	0.51	-0.1
1,562,169	-		GFF1531	0.51	-1.6
1,562,174	-		GFF1531	0.51	+0.3
1,562,174	-		GFF1531	0.51	+0.4
1,562,174	-		GFF1531	0.51	+0.6
1,562,174	-		GFF1531	0.51	-0.1
1,562,174	-		GFF1531	0.51	-0.6
1,562,174	-		GFF1531	0.51	-0.2
1,562,174	-		GFF1531	0.51	+1.3
1,562,185	+		GFF1531	0.52	+0.6
1,562,193	-		GFF1531	0.52	-1.2
1,562,247	+		GFF1531	0.56	-0.7
1,562,249	+		GFF1531	0.56	+0.4
1,562,249	+		GFF1531	0.56	-0.5
1,562,291	+		GFF1531	0.59	+0.1
1,562,291	+		GFF1531	0.59	-1.1
1,562,291	+		GFF1531	0.59	-2.0
1,562,299	-		GFF1531	0.60	-1.4
1,562,304	-		GFF1531	0.60	+0.3
1,562,307	-		GFF1531	0.60	-1.5
1,562,324	-		GFF1531	0.61	+0.8
1,562,326	+		GFF1531	0.61	+0.2
1,562,326	+		GFF1531	0.61	-0.9
1,562,326	+		GFF1531	0.61	-0.9
1,562,334	-		GFF1531	0.62	-0.2
1,562,334	-		GFF1531	0.62	-0.6
1,562,334	-		GFF1531	0.62	-0.3
1,562,350	+		GFF1531	0.63	+1.6
1,562,350	+		GFF1531	0.63	-1.1
1,562,350	+		GFF1531	0.63	-2.1
1,562,350	+		GFF1531	0.63	-1.1
1,562,350	+		GFF1531	0.63	+0.2
1,562,350	-		GFF1531	0.63	-1.2
1,562,350	-		GFF1531	0.63	+0.8
1,562,358	-		GFF1531	0.64	-0.9
1,562,358	-		GFF1531	0.64	-0.4
1,562,358	-		GFF1531	0.64	-0.2
1,562,358	-		GFF1531	0.64	+1.0
1,562,358	-		GFF1531	0.64	+0.5
1,562,358	-		GFF1531	0.64	+0.6
1,562,412	+		GFF1531	0.67	-1.5
1,562,444	-		GFF1531	0.69	-1.3
1,562,451	+		GFF1531	0.70	+0.2
1,562,456	+		GFF1531	0.70	-0.2
1,562,464	-		GFF1531	0.71	-0.5
1,562,464	-		GFF1531	0.71	-1.5
1,562,472	+		GFF1531	0.71	-0.8
1,562,483	+		GFF1531	0.72	+0.6
1,562,501	-		GFF1531	0.73	+1.1
1,562,524	-		GFF1531	0.75	+0.1
1,562,558	+		GFF1531	0.77	-1.2
1,562,564	+		GFF1531	0.77	-0.7
1,562,566	+		GFF1531	0.77	-0.5
1,562,572	-		GFF1531	0.78	-2.9
1,562,577	-		GFF1531	0.78	-0.5
1,562,593	+		GFF1531	0.79	-2.3
1,562,596	-		GFF1531	0.80	+0.4
1,562,601	-		GFF1531	0.80	-0.4
1,562,601	-		GFF1531	0.80	-0.6
1,562,638	+		GFF1531	0.82	-1.5
1,562,638	+		GFF1531	0.82	+0.1
1,562,638	+		GFF1531	0.82	-1.3
1,562,663	+		GFF1531	0.84	+0.1
1,562,682	+		GFF1531	0.85	-0.5
1,562,690	-		GFF1531	0.86	-0.4
1,562,711	-		GFF1531	0.87	-0.3
1,562,728	+		GFF1531	0.88	-0.1
1,562,728	+		GFF1531	0.88	+0.2
1,562,728	+		GFF1531	0.88	-1.0
1,562,736	-		GFF1531	0.89	+0.1
1,562,736	-		GFF1531	0.89	-0.2
1,562,764	-				+0.8
1,562,782	-				-1.4
1,562,787	-				-0.7
1,562,799	+				+1.1
1,562,799	+				+0.2
1,562,800	+				-0.8
1,562,800	+				-0.0
1,562,808	-				-1.7
1,562,818	+				-0.3
1,562,823	+				+0.3
1,562,823	+				-0.8
1,562,823	+				-1.4
1,562,823	+				-0.5
1,562,823	+				-1.7
1,562,823	+				-1.2
1,562,831	-				+0.9
1,562,831	-				+0.3
1,562,831	-				+0.0
1,562,831	-				-0.8
1,562,831	-				-0.4
1,562,848	-				-2.2
1,562,910	-				-1.3
1,562,910	-				+0.4
1,562,928	+				+1.1
1,562,928	+				-0.7
1,562,928	+				+0.7
1,562,928	+				+0.4
1,562,928	+				+1.1
1,562,928	+				-1.7
1,562,936	-				-2.8
1,562,936	-				-1.1
1,562,936	-				-0.4
1,562,936	-				-1.6
1,562,936	-				-0.8
1,562,936	-				+0.1
1,562,939	+				+0.2
1,562,939	+				-0.5
1,562,939	+				-1.1
1,562,947	-				+0.1
1,562,947	-				+1.4
1,562,947	-				+0.5
1,563,004	+				+0.7
1,563,022	-				+0.2
1,563,022	-				-2.3
1,563,084	+				+0.6
1,563,101	+				-2.7
1,563,101	+				+0.5
1,563,106	+				+0.4
1,563,115	+				-0.2
1,563,128	+				-1.1
1,563,128	+				-1.3
1,563,138	+		GFF1532	0.11	-0.9
1,563,143	+		GFF1532	0.12	+0.0
1,563,146	-		GFF1532	0.12	-1.0
1,563,147	+		GFF1532	0.12	+0.0
1,563,155	-		GFF1532	0.13	-1.0
1,563,184	+		GFF1532	0.17	+0.6
1,563,203	+		GFF1532	0.20	-1.4
1,563,203	+		GFF1532	0.20	-1.6
1,563,211	-		GFF1532	0.21	-1.4
1,563,211	-		GFF1532	0.21	-0.6
1,563,211	-		GFF1532	0.21	-0.6
1,563,245	+		GFF1532	0.26	-1.2
1,563,246	-		GFF1532	0.26	-2.8
1,563,252	+		GFF1532	0.27	-0.0
1,563,263	+		GFF1532	0.28	-0.3
1,563,270	+		GFF1532	0.29	-1.1
1,563,271	-		GFF1532	0.29	+0.6
1,563,272	-		GFF1532	0.30	+0.4
1,563,279	-		GFF1532	0.31	-0.6
1,563,304	-		GFF1532	0.34	-1.3
1,563,331	-		GFF1532	0.38	+0.6
1,563,336	+		GFF1532	0.38	-0.2
1,563,341	+		GFF1532	0.39	+0.4
1,563,349	-		GFF1532	0.40	-1.2
1,563,349	-		GFF1532	0.40	-0.7
1,563,349	-		GFF1532	0.40	-1.2
1,563,360	+		GFF1532	0.42	-0.3
1,563,366	-		GFF1532	0.43	-0.8
1,563,379	+		GFF1532	0.44	-1.9
1,563,389	+		GFF1532	0.46	-0.8
1,563,392	+		GFF1532	0.46	-1.1
1,563,392	-		GFF1532	0.46	-0.5
1,563,400	-		GFF1532	0.47	+0.5
1,563,411	+		GFF1532	0.49	+0.1
1,563,411	+		GFF1532	0.49	+0.4
1,563,419	-		GFF1532	0.50	-0.8
1,563,419	-		GFF1532	0.50	+0.6
1,563,419	-		GFF1532	0.50	-0.8
1,563,419	-		GFF1532	0.50	+0.8
1,563,419	-		GFF1532	0.50	+0.7
1,563,434	+		GFF1532	0.52	-2.9
1,563,453	-		GFF1532	0.55	-0.5
1,563,457	+		GFF1532	0.55	-0.3
1,563,465	-		GFF1532	0.56	-0.5
1,563,514	-		GFF1532	0.63	-0.2
1,563,516	+		GFF1532	0.63	-0.4
1,563,535	+		GFF1532	0.66	-0.5
1,563,561	+		GFF1532	0.70	-0.8
1,563,569	-		GFF1532	0.71	-0.7
1,563,574	+		GFF1532	0.71	-0.1
1,563,579	+		GFF1532	0.72	-0.6
1,563,584	+		GFF1532	0.73	+0.9
1,563,584	+		GFF1532	0.73	-0.7
1,563,584	+		GFF1532	0.73	+0.0
1,563,584	-		GFF1532	0.73	-0.2
1,563,589	+		GFF1532	0.73	-0.3
1,563,589	+		GFF1532	0.73	+0.5
1,563,589	+		GFF1532	0.73	+0.5
1,563,589	+		GFF1532	0.73	-0.0
1,563,589	+		GFF1532	0.73	-0.1
1,563,589	+		GFF1532	0.73	-1.5
1,563,589	+		GFF1532	0.73	+0.3
1,563,597	-		GFF1532	0.75	+0.5
1,563,597	-		GFF1532	0.75	-1.4
1,563,597	-		GFF1532	0.75	+1.6
1,563,597	-		GFF1532	0.75	-1.4
1,563,602	-		GFF1532	0.75	+0.5
1,563,602	-		GFF1532	0.75	+0.4
1,563,646	-		GFF1532	0.81	+1.0
1,563,653	-		GFF1532	0.82	-0.6
1,563,653	-		GFF1532	0.82	+0.5
1,563,657	+		GFF1532	0.83	-0.3
1,563,669	+		GFF1532	0.85	+0.4
1,563,706	+		GFF1532	0.90	-1.5
1,563,745	+				-0.4
1,563,745	+				-0.6
1,563,753	-				+0.6
1,563,753	-				-0.9
1,563,753	-				-0.7
1,563,774	+				-0.4
1,563,782	-				+0.1
1,563,795	+				+0.6
1,563,795	+				-0.3
1,563,801	+				-0.7
1,563,803	-				-1.4
1,563,803	-				-0.9
1,563,828	-				-2.8
1,563,851	-				-0.1
1,563,854	+				-1.0
1,563,862	-				+0.1
1,563,862	-				-0.1
1,563,868	-				-0.0
1,564,038	-				-2.2
1,564,044	+				-0.4
1,564,094	+				-0.7
1,564,094	+				+0.2
1,564,094	+				-1.5
1,564,094	+				-0.7
1,564,102	-				-1.5
1,564,106	+				-1.6
1,564,108	+				+1.4
1,564,126	-				-1.4
1,564,218	-				+0.5
1,564,283	+		GFF1533	0.12	+0.4
1,564,317	+		GFF1533	0.13	-0.8
1,564,317	+		GFF1533	0.13	+1.2
1,564,345	+		GFF1533	0.14	+0.2
1,564,407	+		GFF1533	0.17	-1.6
1,564,407	+		GFF1533	0.17	+0.7
1,564,435	+		GFF1533	0.18	-0.7
1,564,435	+		GFF1533	0.18	-0.3
1,564,526	+		GFF1533	0.22	+0.4
1,564,761	+		GFF1533	0.32	-0.2