Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF147 and GFF148 are separated by 17 nucleotides GFF148 and GFF149 are separated by 183 nucleotides GFF149 and GFF150 are separated by 34 nucleotides GFF150 and GFF151 are separated by 142 nucleotides GFF151 and GFF152 are separated by 172 nucleotides
GFF147 - ATP-dependent hsl protease ATP-binding subunit HslU, at 143,031 to 144,332
GFF147
GFF148 - ATP-dependent protease subunit HslV (EC 3.4.25.2), at 144,350 to 144,916
GFF148
GFF149 - hypothetical protein, at 145,100 to 145,285
GFF149
GFF150 - Entericidin A/B family protein, at 145,320 to 145,448
GFF150
GFF151 - tRNA-Val-CAC, at 145,591 to 145,665
GFF151
GFF152 - Efflux ABC transporter, permease protein, at 145,838 to 147,091
GFF152
Position (kb) 145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 144.165 kb on + strand, within GFF147 at 144.181 kb on + strand, within GFF147 at 144.220 kb on - strand at 144.237 kb on - strand at 144.239 kb on + strand at 144.262 kb on + strand at 144.308 kb on + strand at 144.313 kb on + strand at 144.393 kb on - strand at 144.433 kb on + strand, within GFF148 at 144.440 kb on + strand, within GFF148 at 144.459 kb on + strand, within GFF148 at 144.459 kb on + strand, within GFF148 at 144.495 kb on - strand, within GFF148 at 144.532 kb on - strand, within GFF148 at 144.532 kb on - strand, within GFF148 at 144.532 kb on - strand, within GFF148 at 144.532 kb on - strand, within GFF148 at 144.541 kb on - strand, within GFF148 at 144.555 kb on + strand, within GFF148 at 144.567 kb on - strand, within GFF148 at 144.641 kb on - strand, within GFF148 at 144.685 kb on - strand, within GFF148 at 144.701 kb on + strand, within GFF148 at 144.709 kb on + strand, within GFF148 at 144.717 kb on - strand, within GFF148 at 144.717 kb on - strand, within GFF148 at 144.717 kb on - strand, within GFF148 at 144.717 kb on - strand, within GFF148 at 144.724 kb on - strand, within GFF148 at 144.784 kb on + strand, within GFF148 at 144.792 kb on - strand, within GFF148 at 144.800 kb on + strand, within GFF148 at 144.834 kb on + strand, within GFF148 at 144.902 kb on - strand at 144.910 kb on - strand at 144.910 kb on - strand at 144.911 kb on + strand at 144.946 kb on - strand at 144.955 kb on - strand at 144.976 kb on - strand at 145.013 kb on - strand at 145.050 kb on + strand at 145.050 kb on + strand at 145.058 kb on - strand at 145.081 kb on + strand at 145.083 kb on + strand at 145.096 kb on + strand at 145.104 kb on + strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.111 kb on + strand at 145.112 kb on - strand at 145.119 kb on - strand, within GFF149 at 145.142 kb on + strand, within GFF149 at 145.150 kb on - strand, within GFF149 at 145.153 kb on + strand, within GFF149 at 145.161 kb on - strand, within GFF149 at 145.164 kb on + strand, within GFF149 at 145.175 kb on - strand, within GFF149 at 145.187 kb on + strand, within GFF149 at 145.187 kb on + strand, within GFF149 at 145.192 kb on + strand, within GFF149 at 145.192 kb on + strand, within GFF149 at 145.200 kb on + strand, within GFF149 at 145.231 kb on + strand, within GFF149 at 145.239 kb on + strand, within GFF149 at 145.239 kb on + strand, within GFF149 at 145.239 kb on + strand, within GFF149 at 145.239 kb on + strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.275 kb on + strand at 145.298 kb on - strand at 145.300 kb on + strand at 145.306 kb on - strand at 145.316 kb on - strand at 145.318 kb on - strand at 145.318 kb on - strand at 145.318 kb on - strand at 145.353 kb on - strand, within GFF150 at 145.374 kb on + strand, within GFF150 at 145.382 kb on - strand, within GFF150 at 145.382 kb on - strand, within GFF150 at 145.382 kb on - strand, within GFF150 at 145.382 kb on - strand, within GFF150 at 145.382 kb on - strand, within GFF150 at 145.384 kb on + strand, within GFF150 at 145.384 kb on + strand, within GFF150 at 145.386 kb on + strand, within GFF150 at 145.386 kb on - strand, within GFF150 at 145.392 kb on - strand, within GFF150 at 145.409 kb on + strand, within GFF150 at 145.460 kb on + strand at 145.465 kb on + strand at 145.470 kb on + strand at 145.470 kb on + strand at 145.470 kb on + strand at 145.473 kb on - strand at 145.473 kb on - strand at 145.473 kb on - strand at 145.473 kb on - strand at 145.475 kb on + strand at 145.478 kb on - strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.485 kb on + strand at 145.485 kb on + strand at 145.485 kb on + strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.490 kb on - strand at 145.493 kb on - strand at 145.493 kb on - strand at 145.493 kb on - strand at 145.507 kb on + strand at 145.515 kb on - strand at 145.515 kb on - strand at 145.548 kb on - strand at 145.548 kb on - strand at 145.548 kb on - strand at 145.548 kb on - strand at 145.548 kb on - strand at 145.579 kb on + strand at 145.583 kb on + strand at 145.694 kb on + strand at 145.731 kb on + strand at 145.731 kb on + strand at 145.736 kb on + strand at 145.736 kb on + strand at 145.736 kb on + strand at 145.736 kb on + strand at 145.739 kb on - strand at 145.741 kb on + strand at 145.742 kb on - strand at 145.744 kb on - strand at 145.744 kb on - strand at 145.744 kb on - strand at 145.747 kb on + strand at 145.757 kb on - strand at 145.806 kb on + strand at 145.818 kb on + strand at 145.841 kb on - strand at 145.895 kb on + strand at 145.920 kb on - strand at 145.922 kb on + strand at 145.933 kb on + strand at 145.935 kb on - strand at 145.939 kb on - strand at 145.939 kb on - strand at 145.939 kb on - strand at 145.939 kb on - strand at 145.959 kb on - strand at 145.985 kb on - strand, within GFF152 at 145.991 kb on - strand, within GFF152 at 146.027 kb on - strand, within GFF152 at 146.032 kb on - strand, within GFF152 at 146.052 kb on + strand, within GFF152 at 146.057 kb on + strand, within GFF152 at 146.065 kb on + strand, within GFF152 at 146.065 kb on + strand, within GFF152 at 146.073 kb on - strand, within GFF152 at 146.085 kb on + strand, within GFF152 at 146.093 kb on - strand, within GFF152 at 146.093 kb on - strand, within GFF152 at 146.100 kb on - strand, within GFF152 at 146.125 kb on - strand, within GFF152 at 146.155 kb on - strand, within GFF152 at 146.159 kb on + strand, within GFF152 at 146.159 kb on + strand, within GFF152 at 146.164 kb on + strand, within GFF152 at 146.167 kb on - strand, within GFF152 at 146.199 kb on - strand, within GFF152 at 146.231 kb on + strand, within GFF152 at 146.231 kb on + strand, within GFF152 at 146.231 kb on + strand, within GFF152 at 146.241 kb on + strand, within GFF152 at 146.260 kb on + strand, within GFF152 at 146.262 kb on + strand, within GFF152 at 146.262 kb on + strand, within GFF152 at 146.264 kb on - strand, within GFF152 at 146.268 kb on - strand, within GFF152 at 146.272 kb on + strand, within GFF152 at 146.272 kb on + strand, within GFF152 at 146.280 kb on + strand, within GFF152
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 144,165 + GFF147 0.87 -2.0 144,181 + GFF147 0.88 -0.2 144,220 - -0.2 144,237 - -2.0 144,239 + -2.1 144,262 + -1.4 144,308 + -2.3 144,313 + -1.7 144,393 - +0.5 144,433 + GFF148 0.15 -2.1 144,440 + GFF148 0.16 -1.5 144,459 + GFF148 0.19 -1.4 144,459 + GFF148 0.19 -1.2 144,495 - GFF148 0.26 -2.4 144,532 - GFF148 0.32 -0.4 144,532 - GFF148 0.32 -1.2 144,532 - GFF148 0.32 -0.6 144,532 - GFF148 0.32 -2.3 144,541 - GFF148 0.34 -2.3 144,555 + GFF148 0.36 -1.5 144,567 - GFF148 0.38 -0.1 144,641 - GFF148 0.51 -0.0 144,685 - GFF148 0.59 -0.5 144,701 + GFF148 0.62 -1.2 144,709 + GFF148 0.63 +1.0 144,717 - GFF148 0.65 +0.1 144,717 - GFF148 0.65 -2.4 144,717 - GFF148 0.65 +0.8 144,717 - GFF148 0.65 -0.3 144,724 - GFF148 0.66 -1.5 144,784 + GFF148 0.77 -0.8 144,792 - GFF148 0.78 -1.7 144,800 + GFF148 0.79 -1.4 144,834 + GFF148 0.85 -2.0 144,902 - -0.5 144,910 - -1.0 144,910 - -0.8 144,911 + -0.3 144,946 - +0.8 144,955 - -1.6 144,976 - +1.4 145,013 - -0.6 145,050 + -1.4 145,050 + -0.8 145,058 - -1.7 145,081 + +0.9 145,083 + +0.7 145,096 + +1.1 145,104 + -2.5 145,104 - +0.2 145,104 - +0.1 145,104 - +0.3 145,104 - +0.9 145,104 - +1.3 145,111 + +0.8 145,112 - -0.7 145,119 - GFF149 0.10 -0.3 145,142 + GFF149 0.23 -1.2 145,150 - GFF149 0.27 -0.4 145,153 + GFF149 0.28 -1.1 145,161 - GFF149 0.33 -0.0 145,164 + GFF149 0.34 +0.3 145,175 - GFF149 0.40 +0.5 145,187 + GFF149 0.47 -0.4 145,187 + GFF149 0.47 -0.4 145,192 + GFF149 0.49 +0.2 145,192 + GFF149 0.49 -0.9 145,200 + GFF149 0.54 +1.2 145,231 + GFF149 0.70 -0.5 145,239 + GFF149 0.75 -0.3 145,239 + GFF149 0.75 -1.2 145,239 + GFF149 0.75 -1.6 145,239 + GFF149 0.75 +0.4 145,247 - GFF149 0.79 -0.3 145,247 - GFF149 0.79 -0.1 145,247 - GFF149 0.79 +0.1 145,275 + -0.6 145,298 - +0.2 145,300 + +2.0 145,306 - +1.3 145,316 - -0.3 145,318 - -0.9 145,318 - +0.5 145,318 - +0.1 145,353 - GFF150 0.26 -0.4 145,374 + GFF150 0.42 +1.6 145,382 - GFF150 0.48 -0.1 145,382 - GFF150 0.48 -0.0 145,382 - GFF150 0.48 +1.0 145,382 - GFF150 0.48 +0.5 145,382 - GFF150 0.48 +0.5 145,384 + GFF150 0.50 +1.2 145,384 + GFF150 0.50 +0.1 145,386 + GFF150 0.51 -2.1 145,386 - GFF150 0.51 -0.3 145,392 - GFF150 0.56 -1.7 145,409 + GFF150 0.69 -1.5 145,460 + -0.2 145,465 + -0.2 145,470 + +1.0 145,470 + +0.1 145,470 + -0.8 145,473 - -1.2 145,473 - +1.0 145,473 - +0.5 145,473 - -0.5 145,475 + -0.6 145,478 - +0.4 145,480 + -1.7 145,480 + -0.3 145,480 + -1.2 145,480 + -0.0 145,480 + -0.8 145,480 + -2.2 145,480 + -1.3 145,480 + -1.2 145,480 + -1.1 145,480 + -0.8 145,480 + -2.2 145,485 + -0.3 145,485 + +0.5 145,485 + +1.3 145,488 - -0.4 145,488 - -0.1 145,488 - +0.5 145,488 - -0.5 145,490 - -2.6 145,493 - +1.3 145,493 - +0.3 145,493 - -0.3 145,507 + +0.5 145,515 - -1.0 145,515 - -0.4 145,548 - -1.4 145,548 - -1.5 145,548 - -1.2 145,548 - -1.5 145,548 - -0.7 145,579 + -0.6 145,583 + +0.2 145,694 + -0.7 145,731 + -1.0 145,731 + +0.5 145,736 + -3.1 145,736 + -1.3 145,736 + +0.7 145,736 + +0.8 145,739 - -0.8 145,741 + -0.9 145,742 - +0.2 145,744 - -1.9 145,744 - +0.1 145,744 - -0.9 145,747 + -0.4 145,757 - +0.1 145,806 + -1.2 145,818 + -0.1 145,841 - +1.4 145,895 + -0.4 145,920 - +0.2 145,922 + -2.0 145,933 + +0.4 145,935 - +1.8 145,939 - -0.1 145,939 - -0.8 145,939 - -0.8 145,939 - -2.5 145,959 - -0.3 145,985 - GFF152 0.12 +0.6 145,991 - GFF152 0.12 -0.8 146,027 - GFF152 0.15 +0.6 146,032 - GFF152 0.15 -0.1 146,052 + GFF152 0.17 +0.6 146,057 + GFF152 0.17 -0.8 146,065 + GFF152 0.18 -0.2 146,065 + GFF152 0.18 +0.5 146,073 - GFF152 0.19 -1.9 146,085 + GFF152 0.20 -0.4 146,093 - GFF152 0.20 -0.1 146,093 - GFF152 0.20 -1.8 146,100 - GFF152 0.21 +0.2 146,125 - GFF152 0.23 -1.1 146,155 - GFF152 0.25 -1.0 146,159 + GFF152 0.26 +1.3 146,159 + GFF152 0.26 -0.2 146,164 + GFF152 0.26 +1.3 146,167 - GFF152 0.26 -0.6 146,199 - GFF152 0.29 +1.6 146,231 + GFF152 0.31 +0.6 146,231 + GFF152 0.31 +0.1 146,231 + GFF152 0.31 +1.5 146,241 + GFF152 0.32 +0.5 146,260 + GFF152 0.34 -0.9 146,262 + GFF152 0.34 +0.4 146,262 + GFF152 0.34 +0.1 146,264 - GFF152 0.34 +0.1 146,268 - GFF152 0.34 -0.0 146,272 + GFF152 0.35 -0.1 146,272 + GFF152 0.35 -1.4 146,280 + GFF152 0.35 +0.7
Or see this region's nucleotide sequence