Strain Fitness in Sphingobium sp. HT1-2 around GFF1487

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,510,268	+		GFF1485	0.37	+0.2
1,510,276	-		GFF1485	0.38	-2.0
1,510,276	-		GFF1485	0.38	-0.1
1,510,287	+		GFF1485	0.39	-0.7
1,510,287	+		GFF1485	0.39	+0.6
1,510,293	-		GFF1485	0.40	+0.3
1,510,300	+		GFF1485	0.41	-0.6
1,510,304	-		GFF1485	0.41	-2.9
1,510,343	+		GFF1485	0.46	+0.3
1,510,366	-		GFF1485	0.48	-1.3
1,510,366	-		GFF1485	0.48	+0.6
1,510,371	+		GFF1485	0.49	+1.3
1,510,371	+		GFF1485	0.49	-0.7
1,510,371	+		GFF1485	0.49	+0.2
1,510,371	+		GFF1485	0.49	-0.3
1,510,371	+		GFF1485	0.49	-0.8
1,510,371	+		GFF1485	0.49	-0.7
1,510,371	+		GFF1485	0.49	-0.5
1,510,379	-		GFF1485	0.50	-1.4
1,510,379	-		GFF1485	0.50	+0.2
1,510,379	-		GFF1485	0.50	+0.3
1,510,379	-		GFF1485	0.50	-2.5
1,510,379	-		GFF1485	0.50	+0.8
1,510,379	-		GFF1485	0.50	+0.9
1,510,379	-		GFF1485	0.50	-1.1
1,510,432	-		GFF1485	0.56	-1.4
1,510,439	+		GFF1485	0.57	-0.5
1,510,439	+		GFF1485	0.57	+0.3
1,510,454	+		GFF1485	0.59	+0.4
1,510,455	+		GFF1485	0.59	+0.0
1,510,455	+		GFF1485	0.59	+0.0
1,510,456	+		GFF1485	0.59	-1.0
1,510,463	-		GFF1485	0.60	-1.3
1,510,464	-		GFF1485	0.60	-1.2
1,510,473	+		GFF1485	0.61	-0.6
1,510,473	+		GFF1485	0.61	-1.6
1,510,478	+		GFF1485	0.61	+0.8
1,510,504	-		GFF1485	0.64	-1.5
1,510,506	+		GFF1485	0.65	+0.5
1,510,514	-		GFF1485	0.66	-0.4
1,510,519	-		GFF1485	0.66	-0.9
1,510,559	-		GFF1485	0.71	-2.5
1,510,623	+		GFF1485	0.78	-0.8
1,510,631	-		GFF1485	0.79	+1.1
1,510,639	+		GFF1485	0.80	+0.4
1,510,669	-		GFF1485	0.84	-1.0
1,510,678	-		GFF1485	0.85	+0.1
1,510,692	+		GFF1485	0.86	+1.1
1,510,734	+				-0.9
1,510,737	-				-0.6
1,510,763	+				-0.7
1,510,766	-				-0.4
1,510,768	+				+0.9
1,510,771	-				-0.9
1,510,771	-				+0.2
1,510,771	-				-0.1
1,510,771	-				+0.5
1,510,771	-				-0.6
1,510,782	+				+1.1
1,510,794	-				+0.9
1,510,799	-				-0.2
1,510,801	+				+0.7
1,510,801	+				+0.7
1,510,801	+				+0.4
1,510,801	+				-0.6
1,510,801	+				-2.0
1,510,801	+				+0.5
1,510,801	+				-0.8
1,510,801	+				+0.4
1,510,801	+				+0.6
1,510,806	+				-0.4
1,510,809	-				-0.3
1,510,809	-				-1.0
1,510,809	-				-0.0
1,510,809	-				-1.6
1,510,809	-				+0.7
1,510,811	+				+0.0
1,510,811	+				-0.9
1,510,811	+				-0.2
1,510,811	+				+0.6
1,510,819	-				+1.0
1,510,819	-				-0.8
1,510,837	-				+0.1
1,510,846	+				-0.8
1,510,846	+				-0.2
1,510,854	-				-1.3
1,510,854	-				-2.8
1,510,856	+				-0.6
1,510,856	+				-0.6
1,510,864	-				+0.6
1,510,875	+				+1.3
1,510,880	+				-0.8
1,510,893	-				-0.8
1,510,930	-		GFF1486	0.15	+1.0
1,510,957	+		GFF1486	0.22	-1.7
1,510,957	+		GFF1486	0.22	+0.5
1,510,957	+		GFF1486	0.22	+0.2
1,510,965	-		GFF1486	0.24	+1.3
1,510,965	-		GFF1486	0.24	+0.7
1,510,990	+		GFF1486	0.30	-1.2
1,510,990	+		GFF1486	0.30	-0.7
1,510,990	+		GFF1486	0.30	-0.0
1,510,995	+		GFF1486	0.32	-2.3
1,510,998	-		GFF1486	0.33	+0.1
1,510,998	-		GFF1486	0.33	+1.1
1,511,007	+		GFF1486	0.35	+0.5
1,511,012	+		GFF1486	0.36	-0.9
1,511,018	-		GFF1486	0.38	-1.6
1,511,030	+		GFF1486	0.41	+1.2
1,511,062	+		GFF1486	0.49	+0.8
1,511,140	-		GFF1486	0.70	-2.3
1,511,221	+				+1.3
1,511,229	-				+0.2
1,511,229	-				-0.3
1,511,287	+				+0.1
1,511,306	+		GFF1487	0.13	+1.3
1,511,306	+		GFF1487	0.13	+1.1
1,511,306	+		GFF1487	0.13	-0.8
1,511,311	+		GFF1487	0.14	-0.1
1,511,314	-		GFF1487	0.14	+0.4
1,511,314	-		GFF1487	0.14	+0.5
1,511,314	-		GFF1487	0.14	+0.4
1,511,333	+		GFF1487	0.17	-0.9
1,511,341	-		GFF1487	0.19	+0.1
1,511,341	-		GFF1487	0.19	-1.8
1,511,355	+		GFF1487	0.21	+1.0
1,511,355	+		GFF1487	0.21	-2.1
1,511,363	-		GFF1487	0.23	+0.6
1,511,363	-		GFF1487	0.23	+2.0
1,511,363	-		GFF1487	0.23	+0.7
1,511,363	-		GFF1487	0.23	-1.0
1,511,363	-		GFF1487	0.23	-0.9
1,511,365	+		GFF1487	0.23	-1.6
1,511,371	-		GFF1487	0.24	+0.0
1,511,373	-		GFF1487	0.24	-1.2
1,511,399	+		GFF1487	0.29	-1.0
1,511,407	-		GFF1487	0.30	-1.2
1,511,407	-		GFF1487	0.30	+0.0
1,511,462	-		GFF1487	0.40	-2.1
1,511,494	+		GFF1487	0.45	+0.4
1,511,499	+		GFF1487	0.46	-0.2
1,511,580	+		GFF1487	0.60	+0.8
1,511,586	-		GFF1487	0.61	-0.5
1,511,588	-		GFF1487	0.62	-1.1
1,511,588	-		GFF1487	0.62	+0.5
1,511,591	+		GFF1487	0.62	-0.1
1,511,601	+		GFF1487	0.64	-0.4
1,511,609	-		GFF1487	0.65	-0.1
1,511,630	-		GFF1487	0.69	-0.6
1,511,650	+		GFF1487	0.72	+0.5
1,511,671	-		GFF1487	0.76	-0.8
1,511,673	+		GFF1487	0.76	-0.7
1,511,676	-		GFF1487	0.77	-0.6
1,511,676	-		GFF1487	0.77	+0.1
1,511,676	-		GFF1487	0.77	+0.8
1,511,697	+		GFF1487	0.81	-0.3
1,511,697	-		GFF1487	0.81	-1.0
1,511,712	+		GFF1487	0.83	+0.7
1,511,716	-		GFF1487	0.84	+0.6
1,511,716	-		GFF1487	0.84	-1.4
1,511,721	-		GFF1487	0.85	-1.8
1,511,783	+				+0.0
1,511,788	+				-0.8
1,511,788	+				-0.9
1,511,788	+				-1.7
1,511,788	+				-1.1
1,511,788	+				+0.2
1,511,788	+				-0.2
1,511,788	+				+0.5
1,511,788	+				-1.6
1,511,788	+				+1.6
1,511,796	-				-0.1
1,511,796	-				-0.0
1,511,801	-				-0.9
1,511,805	+				+0.2
1,511,812	-				-0.2
1,511,813	-				+1.1
1,511,822	+				+1.8
1,511,827	+				-0.5
1,511,861	-				-1.5
1,511,871	+				+0.7
1,511,871	+				-0.0
1,511,882	+				+1.4
1,511,887	+				-0.2
1,511,910	+				-0.1
1,511,912	+				+0.5
1,511,917	+				+0.9
1,511,917	+				-0.7
1,511,917	+				-0.3
1,511,925	-				+0.8
1,511,925	-				-0.4
1,511,925	-				-0.6
1,511,940	+				-1.1
1,511,945	+				-0.5
1,511,945	+				+0.6
1,511,953	-				-0.0
1,511,953	-				-0.3
1,511,953	-				-0.1
1,511,963	+				-0.9
1,511,994	-				+0.0
1,512,016	+				-1.7
1,512,024	-				-1.0
1,512,040	-				-0.8
1,512,044	+				+0.5
1,512,044	+				-0.1
1,512,047	-				-0.2
1,512,053	+				-0.5
1,512,083	+				+0.1
1,512,107	+		GFF1488	0.11	-1.2
1,512,107	+		GFF1488	0.11	-0.3
1,512,107	+		GFF1488	0.11	+0.6
1,512,107	+		GFF1488	0.11	+0.2
1,512,107	+		GFF1488	0.11	-2.0
1,512,107	+		GFF1488	0.11	+0.7
1,512,107	+		GFF1488	0.11	-0.7
1,512,115	-		GFF1488	0.12	-0.4
1,512,115	-		GFF1488	0.12	+0.9
1,512,115	-		GFF1488	0.12	-0.8
1,512,115	-		GFF1488	0.12	-1.2
1,512,115	-		GFF1488	0.12	-0.4
1,512,115	-		GFF1488	0.12	-1.7
1,512,115	-		GFF1488	0.12	+0.2
1,512,117	+		GFF1488	0.12	+0.6
1,512,125	-		GFF1488	0.12	+0.5
1,512,125	-		GFF1488	0.12	-1.3
1,512,130	+		GFF1488	0.12	+0.4
1,512,138	-		GFF1488	0.13	+0.6
1,512,168	+		GFF1488	0.14	-1.0
1,512,168	+		GFF1488	0.14	+1.1
1,512,174	-		GFF1488	0.15	+0.6
1,512,186	+		GFF1488	0.15	-0.8
1,512,231	+		GFF1488	0.18	-1.3
1,512,233	+		GFF1488	0.18	-0.7
1,512,233	+		GFF1488	0.18	-0.5
1,512,233	+		GFF1488	0.18	-1.7
1,512,238	+		GFF1488	0.18	-0.0
1,512,238	+		GFF1488	0.18	-2.0
1,512,238	+		GFF1488	0.18	+0.4
1,512,238	+		GFF1488	0.18	+0.3
1,512,238	+		GFF1488	0.18	+0.8
1,512,238	+		GFF1488	0.18	-2.1
1,512,241	-		GFF1488	0.18	+0.4
1,512,246	-		GFF1488	0.19	-0.8
1,512,246	-		GFF1488	0.19	+0.5
1,512,246	-		GFF1488	0.19	-1.7
1,512,254	+		GFF1488	0.19	-0.6
1,512,256	+		GFF1488	0.19	-2.0
1,512,256	+		GFF1488	0.19	+0.2
1,512,256	+		GFF1488	0.19	+0.3
1,512,256	+		GFF1488	0.19	-0.3
1,512,262	-		GFF1488	0.19	-1.8
1,512,262	-		GFF1488	0.19	-1.0
1,512,264	-		GFF1488	0.20	-0.7
1,512,264	-		GFF1488	0.20	+0.5
1,512,301	-		GFF1488	0.21	+0.4
1,512,301	-		GFF1488	0.21	+1.7
1,512,353	+		GFF1488	0.24	-1.3
1,512,353	+		GFF1488	0.24	+0.8
1,512,361	-		GFF1488	0.25	+0.1
1,512,361	-		GFF1488	0.25	+0.0
1,512,366	-		GFF1488	0.25	-1.2
1,512,366	-		GFF1488	0.25	-0.4
1,512,368	-		GFF1488	0.25	+0.8
1,512,375	+		GFF1488	0.25	+0.1
1,512,375	+		GFF1488	0.25	+0.2
1,512,375	+		GFF1488	0.25	-0.5
1,512,375	+		GFF1488	0.25	-1.8
1,512,383	-		GFF1488	0.26	-1.5
1,512,383	-		GFF1488	0.26	-1.6
1,512,401	+		GFF1488	0.27	+0.2
1,512,402	+		GFF1488	0.27	-1.2
1,512,411	+		GFF1488	0.27	+1.0
1,512,426	+		GFF1488	0.28	-0.8
1,512,426	+		GFF1488	0.28	-1.3
1,512,457	+		GFF1488	0.30	-1.0
1,512,475	+		GFF1488	0.31	-1.2
1,512,497	+		GFF1488	0.32	+0.8
1,512,518	-		GFF1488	0.33	-1.7
1,512,522	+		GFF1488	0.33	-0.5
1,512,531	+		GFF1488	0.34	+1.4
1,512,547	+		GFF1488	0.35	-0.9
1,512,567	+		GFF1488	0.36	+0.5
1,512,567	+		GFF1488	0.36	-1.6
1,512,567	+		GFF1488	0.36	-0.4
1,512,567	+		GFF1488	0.36	-1.6
1,512,567	+		GFF1488	0.36	-1.0
1,512,575	-		GFF1488	0.36	-2.5
1,512,575	-		GFF1488	0.36	-0.5
1,512,584	-		GFF1488	0.37	-1.2
1,512,591	+		GFF1488	0.37	+0.4
1,512,599	-		GFF1488	0.37	-0.3
1,512,638	+		GFF1488	0.39	+0.1
1,512,646	-		GFF1488	0.40	+0.6
1,512,671	+		GFF1488	0.41	-1.7
1,512,687	+		GFF1488	0.42	+0.6
1,512,687	+		GFF1488	0.42	-0.3
1,512,695	-		GFF1488	0.42	+0.6
1,512,701	-		GFF1488	0.43	-0.8
1,512,738	-		GFF1488	0.45	-0.6
1,512,748	-		GFF1488	0.45	+0.5
1,512,786	+		GFF1488	0.47	-1.3
1,512,789	-		GFF1488	0.47	-1.5