Strain Fitness in Sphingobium sp. HT1-2 around GFF147

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
142,031	-		GFF146	0.58	+0.6
142,057	+		GFF146	0.59	-1.0
142,057	+		GFF146	0.59	+0.0
142,057	+		GFF146	0.59	-2.3
142,057	+		GFF146	0.59	-1.2
142,057	+		GFF146	0.59	-0.9
142,057	+		GFF146	0.59	-0.0
142,065	-		GFF146	0.60	+1.2
142,065	-		GFF146	0.60	-0.3
142,065	-		GFF146	0.60	-0.4
142,065	-		GFF146	0.60	+0.4
142,084	+		GFF146	0.61	+0.3
142,086	+		GFF146	0.61	-0.7
142,096	+		GFF146	0.61	+0.6
142,096	+		GFF146	0.61	-1.7
142,099	-		GFF146	0.61	-1.2
142,099	-		GFF146	0.61	-0.6
142,099	-		GFF146	0.61	-1.4
142,103	+		GFF146	0.62	+0.5
142,138	+		GFF146	0.63	+0.4
142,154	+		GFF146	0.64	+0.4
142,159	+		GFF146	0.64	-0.5
142,164	+		GFF146	0.65	-2.5
142,167	-		GFF146	0.65	-0.3
142,178	+		GFF146	0.65	-0.2
142,187	-		GFF146	0.66	-1.0
142,188	+		GFF146	0.66	-0.6
142,188	+		GFF146	0.66	+0.5
142,196	-		GFF146	0.66	+1.9
142,206	+		GFF146	0.66	+0.0
142,206	+		GFF146	0.66	-0.2
142,206	+		GFF146	0.66	-0.5
142,206	+		GFF146	0.66	-0.2
142,214	-		GFF146	0.67	-0.6
142,214	-		GFF146	0.67	-0.5
142,214	-		GFF146	0.67	-0.8
142,214	-		GFF146	0.67	+0.7
142,223	-		GFF146	0.67	-2.1
142,225	+		GFF146	0.67	-1.0
142,225	+		GFF146	0.67	+0.1
142,225	+		GFF146	0.67	-0.1
142,233	-		GFF146	0.68	-0.0
142,233	-		GFF146	0.68	+0.8
142,233	-		GFF146	0.68	-1.2
142,258	-		GFF146	0.69	-1.4
142,259	+		GFF146	0.69	-1.4
142,259	+		GFF146	0.69	-1.0
142,267	-		GFF146	0.69	-1.5
142,268	-		GFF146	0.69	+0.1
142,268	-		GFF146	0.69	-0.3
142,315	-		GFF146	0.72	+0.8
142,343	+		GFF146	0.73	-0.1
142,366	+		GFF146	0.74	+0.9
142,376	+		GFF146	0.74	-2.0
142,415	+		GFF146	0.76	-0.6
142,442	-		GFF146	0.78	+0.6
142,444	+		GFF146	0.78	-1.1
142,451	-		GFF146	0.78	-2.2
142,461	+		GFF146	0.78	+0.6
142,466	+		GFF146	0.79	+0.6
142,477	+		GFF146	0.79	+0.1
142,477	+		GFF146	0.79	-0.6
142,481	+		GFF146	0.79	-0.8
142,485	-		GFF146	0.80	-0.0
142,485	-		GFF146	0.80	+0.4
142,485	-		GFF146	0.80	+0.7
142,485	-		GFF146	0.80	-0.9
142,490	-		GFF146	0.80	-1.3
142,496	+		GFF146	0.80	+0.6
142,505	+		GFF146	0.81	-1.7
142,507	+		GFF146	0.81	-0.5
142,507	+		GFF146	0.81	+0.1
142,524	-		GFF146	0.81	-0.2
142,529	-		GFF146	0.82	+0.3
142,529	-		GFF146	0.82	+2.3
142,592	-		GFF146	0.85	+1.2
142,603	+		GFF146	0.85	+0.2
142,624	+		GFF146	0.86	+0.6
142,624	+		GFF146	0.86	-0.2
142,647	+		GFF146	0.87	-0.2
142,655	-		GFF146	0.88	-0.2
142,655	-		GFF146	0.88	-1.2
142,661	-		GFF146	0.88	-0.5
142,677	-		GFF146	0.89	-1.9
142,689	-		GFF146	0.89	-0.6
142,721	+				-0.5
142,748	+				-0.8
142,767	-				-0.8
142,793	-				+0.7
142,805	-				+0.0
142,805	-				+0.9
142,805	-				+0.3
142,844	+				-1.6
142,852	+				+0.1
142,860	+				+0.3
142,860	+				+0.5
142,860	+				-0.8
142,860	+				-0.4
142,860	+				+1.5
142,860	+				-1.0
142,860	+				-0.3
142,860	+				-2.4
142,860	+				+0.7
142,860	+				+1.4
142,860	+				+0.7
142,860	+				-0.2
142,860	+				+0.5
142,860	+				+0.8
142,868	-				-0.5
142,868	-				+0.7
142,868	-				-0.3
142,868	-				+1.6
142,868	-				+0.3
142,868	-				+0.1
142,868	-				+0.0
142,868	-				+1.4
142,868	-				-1.0
142,868	-				-1.2
142,868	-				-2.9
142,868	-				+0.1
142,868	-				+0.1
142,868	-				+0.2
142,868	-				-0.2
142,868	-				-0.9
142,868	-				+0.3
142,870	+				+0.4
142,870	+				-0.2
142,870	-				-1.1
142,876	-				-1.6
142,878	+				-2.4
142,878	+				+0.8
142,878	-				-1.4
142,878	-				+0.1
142,885	+				+0.3
142,886	-				-0.7
142,893	-				-0.4
142,895	+				+0.2
142,899	-				-0.2
142,899	-				+1.5
142,949	-				-0.8
142,955	-				+1.4
142,969	+				-0.7
142,969	+				+0.7
143,005	+				-1.9
143,005	+				-2.4
143,005	+				-0.4
143,005	+				-1.3
143,005	+				+0.0
143,010	+				-0.8
143,013	-				-0.6
143,013	-				+0.7
143,013	-				-1.2
143,015	+				-1.3
143,018	-				-1.4
143,019	-				+1.5
143,025	-				+0.5
143,044	-				-1.8
143,058	-				-1.6
143,068	+				-1.4
143,089	+				-1.1
143,089	+				-0.5
143,089	+				-2.8
143,096	-				-1.4
143,097	-				+0.3
143,097	-				-2.0
143,097	-				+0.3
143,097	-				-0.8
143,097	-				-0.5
143,142	+				-0.4
143,150	-				+0.4
143,214	-		GFF147	0.14	-1.8
143,221	+		GFF147	0.15	-0.9
143,229	-		GFF147	0.15	-0.3
143,249	+		GFF147	0.17	-2.7
143,281	+		GFF147	0.19	-2.0
143,289	-		GFF147	0.20	-2.2
143,323	+		GFF147	0.22	-1.6
143,419	+		GFF147	0.30	-1.2
143,456	+		GFF147	0.33	-1.8
143,456	+		GFF147	0.33	-2.2
143,464	-		GFF147	0.33	-0.3
143,467	+		GFF147	0.33	-1.9
143,467	+		GFF147	0.33	-1.4
143,475	-		GFF147	0.34	-1.1
143,475	-		GFF147	0.34	-2.2
143,475	-		GFF147	0.34	-1.2
143,475	-		GFF147	0.34	-0.6
143,475	-		GFF147	0.34	-1.7
143,475	-		GFF147	0.34	+0.5
143,475	-		GFF147	0.34	-1.0
143,475	-		GFF147	0.34	-0.4
143,475	-		GFF147	0.34	-1.4
143,497	+		GFF147	0.36	-1.4
143,537	-		GFF147	0.39	-2.7
143,537	-		GFF147	0.39	-0.5
143,595	+		GFF147	0.43	-1.4
143,628	-		GFF147	0.46	-1.2
143,628	-		GFF147	0.46	+0.8
143,628	-		GFF147	0.46	+0.2
143,640	+		GFF147	0.47	-1.6
143,644	+		GFF147	0.47	-1.6
143,652	-		GFF147	0.48	-0.9
143,667	+		GFF147	0.49	-2.8
143,675	-		GFF147	0.49	-0.8
143,675	-		GFF147	0.49	-1.0
143,677	+		GFF147	0.50	-1.4
143,685	-		GFF147	0.50	+0.6
143,685	-		GFF147	0.50	-0.6
143,685	-		GFF147	0.50	-1.6
143,746	-		GFF147	0.55	-1.4
143,754	-		GFF147	0.56	-1.4
143,754	-		GFF147	0.56	-0.4
143,762	+		GFF147	0.56	-0.4
143,776	+		GFF147	0.57	-0.0
143,834	+		GFF147	0.62	-2.7
143,842	-		GFF147	0.62	+0.8
143,854	+		GFF147	0.63	-2.1
143,854	+		GFF147	0.63	+0.1
143,862	-		GFF147	0.64	-0.2
143,877	-		GFF147	0.65	-1.6
143,882	+		GFF147	0.65	-1.8
143,925	-		GFF147	0.69	-1.2
143,970	+		GFF147	0.72	-0.6
143,978	-		GFF147	0.73	-0.4
143,985	-		GFF147	0.73	-0.4
144,021	-		GFF147	0.76	+0.2
144,021	-		GFF147	0.76	-2.0
144,067	-		GFF147	0.80	-1.7
144,091	-		GFF147	0.81	-1.9
144,165	+		GFF147	0.87	-2.0
144,181	+		GFF147	0.88	-0.2
144,220	-				-0.2
144,237	-				-2.0
144,239	+				-2.1
144,262	+				-1.4
144,308	+				-2.3
144,313	+				-1.7
144,393	-				+0.5
144,433	+		GFF148	0.15	-2.1
144,440	+		GFF148	0.16	-1.5
144,459	+		GFF148	0.19	-1.4
144,459	+		GFF148	0.19	-1.2
144,495	-		GFF148	0.26	-2.4
144,532	-		GFF148	0.32	-0.4
144,532	-		GFF148	0.32	-1.2
144,532	-		GFF148	0.32	-0.6
144,532	-		GFF148	0.32	-2.3
144,541	-		GFF148	0.34	-2.3
144,555	+		GFF148	0.36	-1.5
144,567	-		GFF148	0.38	-0.1
144,641	-		GFF148	0.51	-0.0
144,685	-		GFF148	0.59	-0.5
144,701	+		GFF148	0.62	-1.2
144,709	+		GFF148	0.63	+1.0
144,717	-		GFF148	0.65	+0.1
144,717	-		GFF148	0.65	-2.4
144,717	-		GFF148	0.65	+0.8
144,717	-		GFF148	0.65	-0.3
144,724	-		GFF148	0.66	-1.5
144,784	+		GFF148	0.77	-0.8
144,792	-		GFF148	0.78	-1.7
144,800	+		GFF148	0.79	-1.4
144,834	+		GFF148	0.85	-2.0
144,902	-				-0.5
144,910	-				-1.0
144,910	-				-0.8
144,911	+				-0.3
144,946	-				+0.8
144,955	-				-1.6
144,976	-				+1.4
145,013	-				-0.6
145,050	+				-1.4
145,050	+				-0.8
145,058	-				-1.7
145,081	+				+0.9
145,083	+				+0.7
145,096	+				+1.1
145,104	+				-2.5
145,104	-				+0.2
145,104	-				+0.1
145,104	-				+0.3
145,104	-				+0.9
145,104	-				+1.3
145,111	+				+0.8
145,112	-				-0.7
145,119	-		GFF149	0.10	-0.3
145,142	+		GFF149	0.23	-1.2
145,150	-		GFF149	0.27	-0.4
145,153	+		GFF149	0.28	-1.1
145,161	-		GFF149	0.33	-0.0
145,164	+		GFF149	0.34	+0.3
145,175	-		GFF149	0.40	+0.5
145,187	+		GFF149	0.47	-0.4
145,187	+		GFF149	0.47	-0.4
145,192	+		GFF149	0.49	+0.2
145,192	+		GFF149	0.49	-0.9
145,200	+		GFF149	0.54	+1.2
145,231	+		GFF149	0.70	-0.5
145,239	+		GFF149	0.75	-0.3
145,239	+		GFF149	0.75	-1.2
145,239	+		GFF149	0.75	-1.6
145,239	+		GFF149	0.75	+0.4
145,247	-		GFF149	0.79	-0.3
145,247	-		GFF149	0.79	-0.1
145,247	-		GFF149	0.79	+0.1
145,275	+				-0.6
145,298	-				+0.2
145,300	+				+2.0
145,306	-				+1.3
145,316	-				-0.3
145,318	-				-0.9
145,318	-				+0.5
145,318	-				+0.1