Strain Fitness in Sphingobium sp. HT1-2 around GFF146

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
140,802	+				-0.5
140,802	+				-1.8
140,804	+				+0.4
140,810	-				-0.4
140,810	-				-1.7
140,810	-				+0.0
140,826	-				-1.3
140,842	+				+0.6
140,842	+				-0.9
140,850	-				-2.2
140,850	-				-2.5
140,864	+				+0.8
140,876	+				+0.3
140,881	+				-0.5
140,952	+				-0.3
140,962	+				-0.1
140,962	+				-0.5
140,962	+				-0.4
140,962	+				-1.4
140,970	-				+0.9
140,970	-				-0.3
140,978	-				+0.6
140,982	-				+0.3
140,984	+				-0.0
140,984	+				-0.0
140,994	-				-0.4
141,000	-				-0.8
141,010	+		GFF146	0.10	+0.3
141,010	+		GFF146	0.10	+0.6
141,010	+		GFF146	0.10	-0.5
141,010	+		GFF146	0.10	-2.0
141,010	+		GFF146	0.10	+1.8
141,010	+		GFF146	0.10	-0.5
141,014	+		GFF146	0.10	-0.6
141,014	+		GFF146	0.10	-1.4
141,015	+		GFF146	0.10	+1.6
141,015	+		GFF146	0.10	-0.4
141,015	+		GFF146	0.10	-0.1
141,018	-		GFF146	0.11	+0.6
141,018	-		GFF146	0.11	-1.0
141,018	-		GFF146	0.11	-1.8
141,022	-		GFF146	0.11	-2.2
141,023	-		GFF146	0.11	-0.8
141,023	-		GFF146	0.11	-0.7
141,023	-		GFF146	0.11	-0.1
141,023	-		GFF146	0.11	+0.6
141,023	-		GFF146	0.11	+0.1
141,023	-		GFF146	0.11	-0.1
141,036	+		GFF146	0.11	+0.7
141,036	-		GFF146	0.11	+0.6
141,038	+		GFF146	0.12	-2.0
141,046	-		GFF146	0.12	-1.4
141,064	+		GFF146	0.13	-1.0
141,064	+		GFF146	0.13	-1.1
141,069	+		GFF146	0.13	+0.0
141,069	+		GFF146	0.13	-0.2
141,069	+		GFF146	0.13	+0.3
141,069	+		GFF146	0.13	-1.1
141,072	-		GFF146	0.13	-0.2
141,077	+		GFF146	0.13	-1.6
141,077	-		GFF146	0.13	-1.4
141,077	-		GFF146	0.13	-1.1
141,082	+		GFF146	0.14	-0.6
141,082	+		GFF146	0.14	+0.8
141,082	+		GFF146	0.14	-0.8
141,090	-		GFF146	0.14	+0.9
141,090	-		GFF146	0.14	-1.9
141,090	-		GFF146	0.14	-0.0
141,095	-		GFF146	0.14	-0.9
141,095	-		GFF146	0.14	-0.7
141,095	-		GFF146	0.14	-2.0
141,100	-		GFF146	0.14	+0.6
141,136	-		GFF146	0.16	+1.1
141,143	+		GFF146	0.17	-0.5
141,143	+		GFF146	0.17	+0.5
141,157	-		GFF146	0.17	-0.9
141,162	+		GFF146	0.17	-2.1
141,170	-		GFF146	0.18	+0.6
141,176	+		GFF146	0.18	-0.1
141,184	+		GFF146	0.18	-0.5
141,186	+		GFF146	0.19	-0.6
141,187	+		GFF146	0.19	-0.2
141,206	+		GFF146	0.19	-0.6
141,206	+		GFF146	0.19	-0.7
141,214	-		GFF146	0.20	-0.4
141,214	-		GFF146	0.20	-1.5
141,214	-		GFF146	0.20	+0.6
141,216	+		GFF146	0.20	-0.8
141,221	+		GFF146	0.20	+0.3
141,221	+		GFF146	0.20	+1.1
141,229	-		GFF146	0.21	-1.8
141,273	+		GFF146	0.23	-1.4
141,273	+		GFF146	0.23	-1.0
141,273	+		GFF146	0.23	-1.6
141,278	+		GFF146	0.23	-1.7
141,281	-		GFF146	0.23	-1.0
141,281	-		GFF146	0.23	-0.9
141,281	-		GFF146	0.23	+0.7
141,281	-		GFF146	0.23	-0.2
141,281	-		GFF146	0.23	+0.8
141,287	-		GFF146	0.23	-0.9
141,307	-		GFF146	0.24	-0.5
141,335	+		GFF146	0.26	+0.5
141,401	+		GFF146	0.29	-0.4
141,409	-		GFF146	0.29	+1.3
141,409	-		GFF146	0.29	-1.2
141,417	+		GFF146	0.29	-0.4
141,431	+		GFF146	0.30	-0.4
141,431	+		GFF146	0.30	-0.8
141,439	+		GFF146	0.30	-0.6
141,476	+		GFF146	0.32	-2.0
141,484	-		GFF146	0.33	+1.5
141,486	+		GFF146	0.33	-0.1
141,486	+		GFF146	0.33	-0.2
141,486	+		GFF146	0.33	+0.4
141,494	-		GFF146	0.33	-1.2
141,494	-		GFF146	0.33	+0.3
141,494	-		GFF146	0.33	-0.2
141,502	-		GFF146	0.33	-0.4
141,502	-		GFF146	0.33	-2.4
141,528	+		GFF146	0.35	+0.8
141,528	+		GFF146	0.35	+1.6
141,528	+		GFF146	0.35	-2.4
141,536	-		GFF146	0.35	+0.2
141,536	-		GFF146	0.35	-1.5
141,550	+		GFF146	0.36	-2.7
141,558	-		GFF146	0.36	-1.7
141,563	-		GFF146	0.36	-1.3
141,568	+		GFF146	0.36	-1.6
141,573	+		GFF146	0.37	-0.8
141,573	+		GFF146	0.37	-0.1
141,573	+		GFF146	0.37	+0.4
141,573	+		GFF146	0.37	-0.9
141,573	+		GFF146	0.37	-0.3
141,576	-		GFF146	0.37	+0.8
141,578	+		GFF146	0.37	+0.9
141,581	-		GFF146	0.37	-2.3
141,581	-		GFF146	0.37	-0.2
141,581	-		GFF146	0.37	-1.2
141,581	-		GFF146	0.37	-0.5
141,581	-		GFF146	0.37	+0.3
141,581	-		GFF146	0.37	-0.1
141,581	-		GFF146	0.37	-1.2
141,581	-		GFF146	0.37	+0.4
141,581	-		GFF146	0.37	-0.5
141,604	+		GFF146	0.38	-2.2
141,605	+		GFF146	0.38	+0.5
141,611	+		GFF146	0.39	-0.4
141,611	+		GFF146	0.39	-1.5
141,612	-		GFF146	0.39	+0.3
141,612	-		GFF146	0.39	+0.3
141,612	-		GFF146	0.39	+0.8
141,613	-		GFF146	0.39	-0.9
141,620	+		GFF146	0.39	-0.4
141,628	-		GFF146	0.39	+0.0
141,664	+		GFF146	0.41	+2.2
141,664	+		GFF146	0.41	-0.3
141,664	+		GFF146	0.41	-0.5
141,665	-		GFF146	0.41	-1.9
141,674	+		GFF146	0.41	-0.9
141,675	-		GFF146	0.42	-1.2
141,684	-		GFF146	0.42	-0.7
141,685	+		GFF146	0.42	+0.4
141,695	+		GFF146	0.42	+0.2
141,695	+		GFF146	0.42	-0.9
141,695	+		GFF146	0.42	-0.5
141,695	+		GFF146	0.42	+0.2
141,695	+		GFF146	0.42	+1.1
141,695	+		GFF146	0.42	-1.1
141,699	-		GFF146	0.43	-0.5
141,702	-		GFF146	0.43	-0.7
141,703	-		GFF146	0.43	+0.5
141,703	-		GFF146	0.43	-1.5
141,703	-		GFF146	0.43	-0.2
141,703	-		GFF146	0.43	+0.6
141,710	+		GFF146	0.43	+0.7
141,710	-		GFF146	0.43	-2.3
141,718	-		GFF146	0.44	-0.2
141,776	+		GFF146	0.46	-0.4
141,780	+		GFF146	0.46	+0.1
141,783	-		GFF146	0.47	-1.5
141,788	-		GFF146	0.47	+1.6
141,824	-		GFF146	0.49	-1.3
141,826	+		GFF146	0.49	-0.5
141,826	+		GFF146	0.49	+0.4
141,834	-		GFF146	0.49	+0.2
141,865	-		GFF146	0.50	+0.3
141,886	+		GFF146	0.51	-1.5
141,886	+		GFF146	0.51	+0.2
141,894	-		GFF146	0.52	+0.8
141,904	-		GFF146	0.52	-1.0
141,919	-		GFF146	0.53	+0.5
141,921	+		GFF146	0.53	+0.7
141,929	-		GFF146	0.53	-0.6
141,951	+		GFF146	0.54	+1.3
141,951	+		GFF146	0.54	+0.1
142,020	-		GFF146	0.58	-1.4
142,022	+		GFF146	0.58	-1.0
142,030	-		GFF146	0.58	+1.4
142,030	-		GFF146	0.58	-0.7
142,030	-		GFF146	0.58	-1.5
142,030	-		GFF146	0.58	-0.6
142,031	-		GFF146	0.58	+0.6
142,057	+		GFF146	0.59	-1.0
142,057	+		GFF146	0.59	+0.0
142,057	+		GFF146	0.59	-2.3
142,057	+		GFF146	0.59	-1.2
142,057	+		GFF146	0.59	-0.9
142,057	+		GFF146	0.59	-0.0
142,065	-		GFF146	0.60	+1.2
142,065	-		GFF146	0.60	-0.3
142,065	-		GFF146	0.60	-0.4
142,065	-		GFF146	0.60	+0.4
142,084	+		GFF146	0.61	+0.3
142,086	+		GFF146	0.61	-0.7
142,096	+		GFF146	0.61	+0.6
142,096	+		GFF146	0.61	-1.7
142,099	-		GFF146	0.61	-1.2
142,099	-		GFF146	0.61	-0.6
142,099	-		GFF146	0.61	-1.4
142,103	+		GFF146	0.62	+0.5
142,138	+		GFF146	0.63	+0.4
142,154	+		GFF146	0.64	+0.4
142,159	+		GFF146	0.64	-0.5
142,164	+		GFF146	0.65	-2.5
142,167	-		GFF146	0.65	-0.3
142,178	+		GFF146	0.65	-0.2
142,187	-		GFF146	0.66	-1.0
142,188	+		GFF146	0.66	-0.6
142,188	+		GFF146	0.66	+0.5
142,196	-		GFF146	0.66	+1.9
142,206	+		GFF146	0.66	+0.0
142,206	+		GFF146	0.66	-0.2
142,206	+		GFF146	0.66	-0.5
142,206	+		GFF146	0.66	-0.2
142,214	-		GFF146	0.67	-0.6
142,214	-		GFF146	0.67	-0.5
142,214	-		GFF146	0.67	-0.8
142,214	-		GFF146	0.67	+0.7
142,223	-		GFF146	0.67	-2.1
142,225	+		GFF146	0.67	-1.0
142,225	+		GFF146	0.67	+0.1
142,225	+		GFF146	0.67	-0.1
142,233	-		GFF146	0.68	-0.0
142,233	-		GFF146	0.68	+0.8
142,233	-		GFF146	0.68	-1.2
142,258	-		GFF146	0.69	-1.4
142,259	+		GFF146	0.69	-1.4
142,259	+		GFF146	0.69	-1.0
142,267	-		GFF146	0.69	-1.5
142,268	-		GFF146	0.69	+0.1
142,268	-		GFF146	0.69	-0.3
142,315	-		GFF146	0.72	+0.8
142,343	+		GFF146	0.73	-0.1
142,366	+		GFF146	0.74	+0.9
142,376	+		GFF146	0.74	-2.0
142,415	+		GFF146	0.76	-0.6
142,442	-		GFF146	0.78	+0.6
142,444	+		GFF146	0.78	-1.1
142,451	-		GFF146	0.78	-2.2
142,461	+		GFF146	0.78	+0.6
142,466	+		GFF146	0.79	+0.6
142,477	+		GFF146	0.79	+0.1
142,477	+		GFF146	0.79	-0.6
142,481	+		GFF146	0.79	-0.8
142,485	-		GFF146	0.80	-0.0
142,485	-		GFF146	0.80	+0.4
142,485	-		GFF146	0.80	+0.7
142,485	-		GFF146	0.80	-0.9
142,490	-		GFF146	0.80	-1.3
142,496	+		GFF146	0.80	+0.6
142,505	+		GFF146	0.81	-1.7
142,507	+		GFF146	0.81	-0.5
142,507	+		GFF146	0.81	+0.1
142,524	-		GFF146	0.81	-0.2
142,529	-		GFF146	0.82	+0.3
142,529	-		GFF146	0.82	+2.3
142,592	-		GFF146	0.85	+1.2
142,603	+		GFF146	0.85	+0.2
142,624	+		GFF146	0.86	+0.6
142,624	+		GFF146	0.86	-0.2
142,647	+		GFF146	0.87	-0.2
142,655	-		GFF146	0.88	-0.2
142,655	-		GFF146	0.88	-1.2
142,661	-		GFF146	0.88	-0.5
142,677	-		GFF146	0.89	-1.9
142,689	-		GFF146	0.89	-0.6
142,721	+				-0.5
142,748	+				-0.8
142,767	-				-0.8
142,793	-				+0.7
142,805	-				+0.0
142,805	-				+0.9
142,805	-				+0.3
142,844	+				-1.6
142,852	+				+0.1
142,860	+				+0.3
142,860	+				+0.5
142,860	+				-0.8
142,860	+				-0.4
142,860	+				+1.5
142,860	+				-1.0
142,860	+				-0.3
142,860	+				-2.4
142,860	+				+0.7
142,860	+				+1.4
142,860	+				+0.7
142,860	+				-0.2
142,860	+				+0.5
142,860	+				+0.8
142,868	-				-0.5
142,868	-				+0.7
142,868	-				-0.3
142,868	-				+1.6
142,868	-				+0.3
142,868	-				+0.1
142,868	-				+0.0
142,868	-				+1.4
142,868	-				-1.0
142,868	-				-1.2
142,868	-				-2.9
142,868	-				+0.1
142,868	-				+0.1
142,868	-				+0.2
142,868	-				-0.2
142,868	-				-0.9
142,868	-				+0.3
142,870	+				+0.4
142,870	+				-0.2
142,870	-				-1.1
142,876	-				-1.6
142,878	+				-2.4
142,878	+				+0.8
142,878	-				-1.4
142,878	-				+0.1
142,885	+				+0.3
142,886	-				-0.7
142,893	-				-0.4
142,895	+				+0.2
142,899	-				-0.2
142,899	-				+1.5
142,949	-				-0.8
142,955	-				+1.4
142,969	+				-0.7
142,969	+				+0.7
143,005	+				-1.9
143,005	+				-2.4
143,005	+				-0.4
143,005	+				-1.3
143,005	+				+0.0
143,010	+				-0.8
143,013	-				-0.6
143,013	-				+0.7
143,013	-				-1.2
143,015	+				-1.3
143,018	-				-1.4
143,019	-				+1.5
143,025	-				+0.5
143,044	-				-1.8
143,058	-				-1.6
143,068	+				-1.4
143,089	+				-1.1
143,089	+				-0.5
143,089	+				-2.8
143,096	-				-1.4
143,097	-				+0.3
143,097	-				-2.0
143,097	-				+0.3
143,097	-				-0.8
143,097	-				-0.5
143,142	+				-0.4
143,150	-				+0.4
143,214	-		GFF147	0.14	-1.8
143,221	+		GFF147	0.15	-0.9
143,229	-		GFF147	0.15	-0.3
143,249	+		GFF147	0.17	-2.7
143,281	+		GFF147	0.19	-2.0
143,289	-		GFF147	0.20	-2.2
143,323	+		GFF147	0.22	-1.6
143,419	+		GFF147	0.30	-1.2
143,456	+		GFF147	0.33	-1.8
143,456	+		GFF147	0.33	-2.2
143,464	-		GFF147	0.33	-0.3
143,467	+		GFF147	0.33	-1.9
143,467	+		GFF147	0.33	-1.4
143,475	-		GFF147	0.34	-1.1
143,475	-		GFF147	0.34	-2.2
143,475	-		GFF147	0.34	-1.2
143,475	-		GFF147	0.34	-0.6
143,475	-		GFF147	0.34	-1.7
143,475	-		GFF147	0.34	+0.5
143,475	-		GFF147	0.34	-1.0
143,475	-		GFF147	0.34	-0.4
143,475	-		GFF147	0.34	-1.4
143,497	+		GFF147	0.36	-1.4
143,537	-		GFF147	0.39	-2.7
143,537	-		GFF147	0.39	-0.5
143,595	+		GFF147	0.43	-1.4
143,628	-		GFF147	0.46	-1.2
143,628	-		GFF147	0.46	+0.8
143,628	-		GFF147	0.46	+0.2
143,640	+		GFF147	0.47	-1.6
143,644	+		GFF147	0.47	-1.6
143,652	-		GFF147	0.48	-0.9
143,667	+		GFF147	0.49	-2.8
143,675	-		GFF147	0.49	-0.8
143,675	-		GFF147	0.49	-1.0
143,677	+		GFF147	0.50	-1.4
143,685	-		GFF147	0.50	+0.6
143,685	-		GFF147	0.50	-0.6
143,685	-		GFF147	0.50	-1.6
143,746	-		GFF147	0.55	-1.4
143,754	-		GFF147	0.56	-1.4
143,754	-		GFF147	0.56	-0.4
143,762	+		GFF147	0.56	-0.4
143,776	+		GFF147	0.57	-0.0
143,834	+		GFF147	0.62	-2.7
143,842	-		GFF147	0.62	+0.8
143,854	+		GFF147	0.63	-2.1
143,854	+		GFF147	0.63	+0.1
143,862	-		GFF147	0.64	-0.2
143,877	-		GFF147	0.65	-1.6
143,882	+		GFF147	0.65	-1.8