Strain Fitness in Sphingobium sp. HT1-2 around GFF1403

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,429,724	+		GFF1402	0.66	-0.5
1,429,724	+		GFF1402	0.66	-0.5
1,429,724	+		GFF1402	0.66	+0.4
1,429,724	+		GFF1402	0.66	+0.3
1,429,724	+		GFF1402	0.66	+0.1
1,429,732	-		GFF1402	0.67	+0.0
1,429,732	-		GFF1402	0.67	+0.2
1,429,732	-		GFF1402	0.67	+0.4
1,429,732	-		GFF1402	0.67	+0.1
1,429,732	-		GFF1402	0.67	-0.2
1,429,732	-		GFF1402	0.67	+0.6
1,429,732	-		GFF1402	0.67	-0.4
1,429,748	-		GFF1402	0.67	-0.5
1,429,762	+		GFF1402	0.68	-0.7
1,429,762	+		GFF1402	0.68	+0.2
1,429,773	+		GFF1402	0.68	+0.5
1,429,778	+		GFF1402	0.69	-0.2
1,429,796	+		GFF1402	0.69	-2.3
1,429,796	+		GFF1402	0.69	-0.6
1,429,804	-		GFF1402	0.70	-0.9
1,429,804	-		GFF1402	0.70	-2.0
1,429,804	-		GFF1402	0.70	-0.4
1,429,809	+		GFF1402	0.70	-0.4
1,429,834	-		GFF1402	0.71	+0.1
1,429,847	+		GFF1402	0.71	-0.6
1,429,848	+		GFF1402	0.71	-0.2
1,429,872	-		GFF1402	0.72	-0.5
1,429,877	+		GFF1402	0.73	-0.8
1,429,927	-		GFF1402	0.75	+0.3
1,429,947	+		GFF1402	0.76	-2.2
1,429,950	-		GFF1402	0.76	-1.6
1,429,950	-		GFF1402	0.76	-2.9
1,429,960	-		GFF1402	0.76	-0.3
1,429,966	+		GFF1402	0.76	-2.2
1,429,974	-		GFF1402	0.77	+0.2
1,429,980	+		GFF1402	0.77	-0.8
1,429,984	-		GFF1402	0.77	+0.1
1,429,988	-		GFF1402	0.77	-0.2
1,429,988	-		GFF1402	0.77	-1.6
1,429,990	-		GFF1402	0.77	+0.2
1,430,041	+		GFF1402	0.80	-1.6
1,430,067	+		GFF1402	0.81	-2.0
1,430,067	+		GFF1402	0.81	+1.0
1,430,067	+		GFF1402	0.81	-2.0
1,430,075	-		GFF1402	0.81	-0.3
1,430,075	-		GFF1402	0.81	-0.1
1,430,075	-		GFF1402	0.81	+0.6
1,430,075	-		GFF1402	0.81	-1.2
1,430,075	-		GFF1402	0.81	+1.4
1,430,075	-		GFF1402	0.81	-0.2
1,430,075	-		GFF1402	0.81	+0.3
1,430,075	-		GFF1402	0.81	+0.1
1,430,077	+		GFF1402	0.81	-1.5
1,430,077	+		GFF1402	0.81	-0.2
1,430,085	-		GFF1402	0.81	-0.6
1,430,085	-		GFF1402	0.81	+0.5
1,430,092	+		GFF1402	0.82	+0.3
1,430,096	+		GFF1402	0.82	+1.4
1,430,096	+		GFF1402	0.82	+1.1
1,430,096	+		GFF1402	0.82	-0.4
1,430,096	+		GFF1402	0.82	+0.2
1,430,097	+		GFF1402	0.82	-1.1
1,430,100	-		GFF1402	0.82	+0.1
1,430,104	-		GFF1402	0.82	-1.8
1,430,104	-		GFF1402	0.82	+0.6
1,430,105	-		GFF1402	0.82	-0.3
1,430,109	-		GFF1402	0.82	+0.8
1,430,114	+		GFF1402	0.83	-1.1
1,430,117	+		GFF1402	0.83	-0.6
1,430,117	+		GFF1402	0.83	-1.1
1,430,117	+		GFF1402	0.83	+2.2
1,430,117	+		GFF1402	0.83	-0.8
1,430,125	-		GFF1402	0.83	-0.4
1,430,139	+		GFF1402	0.84	-1.2
1,430,167	+		GFF1402	0.85	-0.7
1,430,175	-		GFF1402	0.85	-1.1
1,430,175	-		GFF1402	0.85	+1.2
1,430,193	+		GFF1402	0.86	-0.1
1,430,196	-		GFF1402	0.86	-0.3
1,430,206	-		GFF1402	0.86	+0.1
1,430,208	+		GFF1402	0.86	-1.8
1,430,208	+		GFF1402	0.86	-1.0
1,430,208	+		GFF1402	0.86	+0.2
1,430,208	+		GFF1402	0.86	-1.2
1,430,208	+		GFF1402	0.86	-1.4
1,430,211	-		GFF1402	0.87	-0.8
1,430,216	-		GFF1402	0.87	+0.1
1,430,216	-		GFF1402	0.87	-0.4
1,430,216	-		GFF1402	0.87	+0.4
1,430,216	-		GFF1402	0.87	-0.4
1,430,216	-		GFF1402	0.87	-1.2
1,430,216	-		GFF1402	0.87	-2.5
1,430,229	+		GFF1402	0.87	+1.5
1,430,229	+		GFF1402	0.87	-0.0
1,430,229	+		GFF1402	0.87	-0.2
1,430,230	+		GFF1402	0.87	-0.6
1,430,237	-		GFF1402	0.88	-0.2
1,430,239	+		GFF1402	0.88	-1.7
1,430,244	+		GFF1402	0.88	-0.9
1,430,261	-		GFF1402	0.89	-0.3
1,430,264	+		GFF1402	0.89	-0.4
1,430,268	+		GFF1402	0.89	+0.0
1,430,276	-		GFF1402	0.89	-0.8
1,430,280	+		GFF1402	0.89	+0.9
1,430,295	-				+0.6
1,430,297	+				+0.2
1,430,297	+				-0.2
1,430,297	+				-0.8
1,430,297	+				-0.5
1,430,305	-				-1.6
1,430,311	+				+0.0
1,430,311	+				-0.1
1,430,344	+				-1.7
1,430,344	+				-1.1
1,430,352	-				-1.3
1,430,352	-				-1.2
1,430,370	+				-2.4
1,430,391	+				+1.5
1,430,399	-				-1.7
1,430,434	-				+1.9
1,430,505	+				-1.5
1,430,515	+				+0.9
1,430,522	+				+0.6
1,430,530	-				-0.5
1,430,530	-				+1.8
1,430,534	+				-1.0
1,430,547	-				-1.4
1,430,549	-				-1.8
1,430,568	+				+2.0
1,430,568	+				-1.9
1,430,576	-				+1.8
1,430,578	+				-0.4
1,430,586	-				+0.3
1,430,586	-				+0.7
1,430,586	-				-0.4
1,430,609	-				+0.1
1,430,609	-				+0.5
1,430,609	-				-1.8
1,430,714	-				-2.7
1,430,721	+				+0.3
1,430,729	-				+1.2
1,430,745	+		GFF1403	0.11	-1.1
1,430,750	-		GFF1403	0.12	+0.2
1,430,753	-		GFF1403	0.12	-2.4
1,430,753	-		GFF1403	0.12	-2.1
1,430,763	+		GFF1403	0.14	+0.9
1,430,771	-		GFF1403	0.15	-0.3
1,430,798	+		GFF1403	0.19	+0.3
1,430,798	+		GFF1403	0.19	+0.5
1,430,798	+		GFF1403	0.19	-1.6
1,430,806	-		GFF1403	0.21	-2.6
1,430,806	-		GFF1403	0.21	-3.1
1,430,806	-		GFF1403	0.21	+1.0
1,430,806	-		GFF1403	0.21	-1.4
1,430,806	-		GFF1403	0.21	-1.4
1,430,819	+		GFF1403	0.23	+0.0
1,430,827	-		GFF1403	0.24	-0.8
1,430,836	+		GFF1403	0.25	+0.2
1,430,882	-		GFF1403	0.32	-1.2
1,430,882	-		GFF1403	0.32	+1.0
1,430,910	+		GFF1403	0.37	-0.0
1,430,910	+		GFF1403	0.37	-0.0
1,430,918	-		GFF1403	0.38	-2.8
1,430,918	-		GFF1403	0.38	-0.2
1,430,918	-		GFF1403	0.38	-1.6
1,430,918	-		GFF1403	0.38	-1.3
1,430,918	-		GFF1403	0.38	-1.7
1,430,918	-		GFF1403	0.38	+0.3
1,430,925	+		GFF1403	0.39	+1.0
1,430,937	-		GFF1403	0.41	-0.6
1,430,956	-		GFF1403	0.44	-0.5
1,430,977	-		GFF1403	0.47	+0.1
1,431,000	-		GFF1403	0.51	-0.1
1,431,019	-		GFF1403	0.54	-0.8
1,431,020	+		GFF1403	0.54	-1.5
1,431,028	-		GFF1403	0.55	+0.2
1,431,031	-		GFF1403	0.56	+1.4
1,431,041	+		GFF1403	0.57	+0.6
1,431,050	+		GFF1403	0.59	+0.5
1,431,055	+		GFF1403	0.59	-2.5
1,431,063	-		GFF1403	0.61	-0.2
1,431,105	+		GFF1403	0.67	-0.4
1,431,105	+		GFF1403	0.67	-1.5
1,431,109	-		GFF1403	0.68	+0.5
1,431,164	+		GFF1403	0.76	+0.1
1,431,173	-		GFF1403	0.78	-1.3
1,431,173	-		GFF1403	0.78	-0.9
1,431,184	+		GFF1403	0.79	-0.2
1,431,184	+		GFF1403	0.79	+1.5
1,431,192	-		GFF1403	0.81	-0.7
1,431,192	-		GFF1403	0.81	+0.2
1,431,192	-		GFF1403	0.81	-0.6
1,431,197	+		GFF1403	0.81	-2.5
1,431,197	+		GFF1403	0.81	-1.2
1,431,197	+		GFF1403	0.81	+1.2
1,431,197	+		GFF1403	0.81	-0.7
1,431,197	+		GFF1403	0.81	+1.0
1,431,197	+		GFF1403	0.81	-1.5
1,431,205	-		GFF1403	0.83	-0.9
1,431,205	-		GFF1403	0.83	+0.0
1,431,205	-		GFF1403	0.83	+0.2
1,431,205	-		GFF1403	0.83	-0.1
1,431,210	-		GFF1403	0.83	-0.2
1,431,232	-		GFF1403	0.87	+0.6
1,431,237	-		GFF1403	0.88	-0.4
1,431,243	+		GFF1403	0.89	-0.1
1,431,310	+				+0.4
1,431,310	+				-0.7
1,431,317	+				-1.1
1,431,317	+				+0.5
1,431,318	-				+0.4
1,431,325	-				+0.8
1,431,325	-				+0.1
1,431,325	-				-2.0
1,431,335	+				+0.0
1,431,347	+				-1.0
1,431,373	-				-2.4
1,431,399	+				+0.2
1,431,402	-		GFF1404	0.10	-0.3
1,431,407	-		GFF1404	0.11	-0.9
1,431,425	+		GFF1404	0.13	-0.3
1,431,425	+		GFF1404	0.13	+0.1
1,431,425	-		GFF1404	0.13	+0.3
1,431,433	-		GFF1404	0.14	-0.9
1,431,441	+		GFF1404	0.15	-0.2
1,431,443	-		GFF1404	0.15	-2.2
1,431,449	-		GFF1404	0.16	-1.0
1,431,488	+		GFF1404	0.21	-1.0
1,431,496	-		GFF1404	0.22	-0.2
1,431,548	-		GFF1404	0.28	-1.9
1,431,550	-		GFF1404	0.28	+0.2
1,431,550	-		GFF1404	0.28	-3.5
1,431,560	+		GFF1404	0.29	-0.8
1,431,567	-		GFF1404	0.30	-2.9
1,431,576	+		GFF1404	0.31	+0.2
1,431,586	+		GFF1404	0.32	-1.8
1,431,587	+		GFF1404	0.33	-0.4
1,431,591	+		GFF1404	0.33	-2.1
1,431,591	+		GFF1404	0.33	-0.1
1,431,591	+		GFF1404	0.33	+1.1
1,431,591	+		GFF1404	0.33	-0.5
1,431,591	+		GFF1404	0.33	-0.0
1,431,592	+		GFF1404	0.33	-1.7
1,431,592	+		GFF1404	0.33	-1.7
1,431,594	-		GFF1404	0.33	+1.2
1,431,599	-		GFF1404	0.34	-0.1
1,431,619	-		GFF1404	0.36	-0.6
1,431,640	+		GFF1404	0.39	-0.7
1,431,640	+		GFF1404	0.39	+0.1
1,431,648	-		GFF1404	0.40	-0.3
1,431,687	-		GFF1404	0.45	+1.1
1,431,728	+		GFF1404	0.50	-0.8
1,431,728	+		GFF1404	0.50	+0.9
1,431,742	+		GFF1404	0.51	+0.2
1,431,780	+		GFF1404	0.56	-0.6
1,431,790	-		GFF1404	0.57	-0.5
1,431,800	-		GFF1404	0.59	-1.5
1,431,808	-		GFF1404	0.59	-1.6
1,431,813	-		GFF1404	0.60	+0.1
1,431,899	+		GFF1404	0.71	+0.1
1,431,899	+		GFF1404	0.71	+0.4
1,431,921	+		GFF1404	0.73	-0.9
1,431,921	+		GFF1404	0.73	+0.6
1,431,943	+		GFF1404	0.76	-0.2
1,431,943	-		GFF1404	0.76	+0.5
1,431,956	+		GFF1404	0.77	+0.5
1,431,956	+		GFF1404	0.77	-1.1
1,431,957	-		GFF1404	0.78	-1.9
1,431,959	+		GFF1404	0.78	-0.8
1,431,964	+		GFF1404	0.78	-0.5
1,431,964	+		GFF1404	0.78	+1.2
1,431,964	-		GFF1404	0.78	-2.7
1,432,003	+		GFF1404	0.83	-0.8
1,432,013	+		GFF1404	0.84	-1.4
1,432,013	+		GFF1404	0.84	+0.0
1,432,013	+		GFF1404	0.84	+0.0
1,432,013	+		GFF1404	0.84	-0.4
1,432,021	-		GFF1404	0.85	-0.6
1,432,031	-		GFF1404	0.87	-0.8
1,432,031	-		GFF1404	0.87	-0.2
1,432,032	+		GFF1404	0.87	-0.7
1,432,032	+		GFF1404	0.87	-0.9
1,432,039	+		GFF1404	0.88	-0.6
1,432,074	-				-0.6
1,432,088	-				+0.0
1,432,091	+				-1.4
1,432,092	-				+0.0
1,432,101	+				+0.1
1,432,103	+				+0.8
1,432,109	-				-0.0
1,432,113	+				+0.5
1,432,113	+				-0.8
1,432,134	+				+0.1
1,432,138	+				+0.6
1,432,138	+				-0.9
1,432,146	-				-1.3
1,432,147	+				-2.2
1,432,147	+				-1.4
1,432,147	+				+0.6
1,432,147	-				-0.7
1,432,151	-				-1.8
1,432,157	-				-1.5
1,432,162	-				+1.0
1,432,165	+				-1.4
1,432,173	-				-1.9
1,432,176	+				-0.0
1,432,183	+				-0.6
1,432,183	-				-0.9
1,432,201	-				+0.1
1,432,254	+				-0.4
1,432,254	+				-0.6
1,432,257	-				-1.5
1,432,262	-				+0.5
1,432,265	+				+1.7
1,432,276	+				-2.0
1,432,278	+				-1.8
1,432,301	-				+0.2
1,432,307	-				+0.2