Strain Fitness in Sphingobium sp. HT1-2 around GFF1381

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,404,003	+		GFF1380	0.45	-2.3
1,404,038	+		GFF1380	0.47	-0.9
1,404,038	+		GFF1380	0.47	-1.4
1,404,038	+		GFF1380	0.47	+1.1
1,404,046	-		GFF1380	0.48	+0.4
1,404,046	-		GFF1380	0.48	+0.4
1,404,046	-		GFF1380	0.48	-1.1
1,404,065	-		GFF1380	0.49	+1.3
1,404,107	+		GFF1380	0.51	-0.5
1,404,125	-		GFF1380	0.52	-0.9
1,404,125	-		GFF1380	0.52	-0.4
1,404,128	+		GFF1380	0.53	-0.8
1,404,128	+		GFF1380	0.53	-1.0
1,404,128	+		GFF1380	0.53	-0.6
1,404,130	-		GFF1380	0.53	+0.9
1,404,138	+		GFF1380	0.53	-1.5
1,404,139	+		GFF1380	0.53	-1.8
1,404,147	-		GFF1380	0.54	-0.0
1,404,156	+		GFF1380	0.54	+0.0
1,404,156	+		GFF1380	0.54	+0.7
1,404,156	+		GFF1380	0.54	+0.2
1,404,156	+		GFF1380	0.54	-0.9
1,404,163	+		GFF1380	0.55	+1.0
1,404,164	-		GFF1380	0.55	-0.1
1,404,164	-		GFF1380	0.55	-0.7
1,404,164	-		GFF1380	0.55	+0.2
1,404,166	-		GFF1380	0.55	-1.7
1,404,183	+		GFF1380	0.56	-0.3
1,404,240	+		GFF1380	0.59	-0.6
1,404,247	+		GFF1380	0.60	+0.5
1,404,247	+		GFF1380	0.60	+0.0
1,404,249	+		GFF1380	0.60	-0.9
1,404,249	+		GFF1380	0.60	+1.0
1,404,254	+		GFF1380	0.60	+0.8
1,404,254	+		GFF1380	0.60	-0.7
1,404,255	-		GFF1380	0.60	-0.8
1,404,255	-		GFF1380	0.60	-1.4
1,404,257	-		GFF1380	0.60	-0.9
1,404,262	-		GFF1380	0.60	-0.7
1,404,262	-		GFF1380	0.60	-0.5
1,404,262	-		GFF1380	0.60	-0.5
1,404,262	-		GFF1380	0.60	+0.3
1,404,264	+		GFF1380	0.61	-0.8
1,404,274	+		GFF1380	0.61	-1.5
1,404,281	+		GFF1380	0.62	+0.8
1,404,282	-		GFF1380	0.62	+0.5
1,404,282	-		GFF1380	0.62	-0.1
1,404,283	+		GFF1380	0.62	-2.5
1,404,301	-		GFF1380	0.63	+0.9
1,404,302	+		GFF1380	0.63	-0.2
1,404,307	+		GFF1380	0.63	-1.7
1,404,307	+		GFF1380	0.63	-0.4
1,404,307	+		GFF1380	0.63	-1.1
1,404,307	+		GFF1380	0.63	-1.5
1,404,307	+		GFF1380	0.63	+0.1
1,404,315	-		GFF1380	0.64	-1.6
1,404,315	-		GFF1380	0.64	+0.4
1,404,315	-		GFF1380	0.64	-0.5
1,404,315	-		GFF1380	0.64	+1.0
1,404,315	-		GFF1380	0.64	-1.5
1,404,325	-		GFF1380	0.64	-0.5
1,404,325	-		GFF1380	0.64	-1.7
1,404,334	+		GFF1380	0.65	-0.2
1,404,342	-		GFF1380	0.65	-1.7
1,404,344	-		GFF1380	0.65	-0.7
1,404,354	-		GFF1380	0.66	+0.2
1,404,376	-		GFF1380	0.67	+0.6
1,404,415	-		GFF1380	0.70	-0.5
1,404,436	+		GFF1380	0.71	+0.9
1,404,436	+		GFF1380	0.71	-2.6
1,404,436	+		GFF1380	0.71	-0.5
1,404,444	-		GFF1380	0.71	-1.4
1,404,455	+		GFF1380	0.72	+1.4
1,404,457	-		GFF1380	0.72	+1.1
1,404,476	-		GFF1380	0.73	+0.2
1,404,477	-		GFF1380	0.73	+0.0
1,404,502	+		GFF1380	0.75	+0.4
1,404,506	+		GFF1380	0.75	-0.2
1,404,510	-		GFF1380	0.75	-1.4
1,404,510	-		GFF1380	0.75	+1.6
1,404,510	-		GFF1380	0.75	-0.3
1,404,553	+		GFF1380	0.78	-1.6
1,404,553	+		GFF1380	0.78	-0.2
1,404,554	-		GFF1380	0.78	-2.3
1,404,558	+		GFF1380	0.78	-0.6
1,404,566	-		GFF1380	0.79	+0.7
1,404,577	+		GFF1380	0.79	-1.0
1,404,593	-		GFF1380	0.80	-1.8
1,404,608	-		GFF1380	0.81	-0.9
1,404,632	+		GFF1380	0.82	+0.3
1,404,650	+		GFF1380	0.84	-1.9
1,404,658	-		GFF1380	0.84	-2.0
1,404,658	-		GFF1380	0.84	-0.7
1,404,658	-		GFF1380	0.84	-2.9
1,404,658	-		GFF1380	0.84	-2.3
1,404,669	-		GFF1380	0.85	-0.2
1,404,689	+		GFF1380	0.86	-2.2
1,404,689	+		GFF1380	0.86	+1.3
1,404,689	+		GFF1380	0.86	-1.9
1,404,689	+		GFF1380	0.86	-0.9
1,404,689	+		GFF1380	0.86	-0.1
1,404,689	+		GFF1380	0.86	+0.1
1,404,696	+		GFF1380	0.86	+1.0
1,404,701	+		GFF1380	0.87	-1.9
1,404,704	-		GFF1380	0.87	-0.9
1,404,704	-		GFF1380	0.87	-0.6
1,404,720	-		GFF1380	0.88	+0.4
1,404,730	-		GFF1380	0.88	-0.0
1,404,739	-		GFF1380	0.89	+0.1
1,404,745	-		GFF1380	0.89	-0.2
1,404,769	-				+0.2
1,404,773	-				-1.7
1,404,890	+				-1.0
1,404,890	+				-0.1
1,404,890	+				+1.6
1,404,890	+				+0.4
1,404,890	+				-0.4
1,404,902	+				-0.5
1,404,929	-				-1.2
1,404,935	-				-2.7
1,404,936	-				+0.2
1,404,945	+				-2.2
1,404,956	-				-0.8
1,404,957	+				-1.2
1,404,972	+				-0.9
1,404,972	+				+0.3
1,404,977	+				-1.1
1,404,977	-				-0.8
1,404,980	-				-0.3
1,404,980	-				-0.3
1,404,980	-				-0.3
1,404,982	+				-0.6
1,405,022	-				+0.4
1,405,026	+				-1.5
1,405,034	-				+1.0
1,405,058	-				+0.3
1,405,062	+				+0.2
1,405,062	+				+1.1
1,405,062	+				-2.1
1,405,062	+				+0.3
1,405,062	+				-0.5
1,405,062	+				-0.8
1,405,062	+				+0.3
1,405,070	-				-0.9
1,405,070	-				-0.0
1,405,070	-				+0.8
1,405,070	-				-0.1
1,405,070	-				+0.7
1,405,070	-				-1.2
1,405,070	-				+0.3
1,405,070	-				-0.6
1,405,103	-		GFF1381	0.11	-2.0
1,405,130	+		GFF1381	0.13	-1.4
1,405,137	+		GFF1381	0.14	-0.5
1,405,145	-		GFF1381	0.15	-0.5
1,405,148	+		GFF1381	0.15	-1.4
1,405,168	+		GFF1381	0.17	+0.1
1,405,173	+		GFF1381	0.17	-0.4
1,405,175	-		GFF1381	0.17	+0.7
1,405,175	-		GFF1381	0.17	+0.3
1,405,181	-		GFF1381	0.18	-0.8
1,405,181	-		GFF1381	0.18	-1.5
1,405,181	-		GFF1381	0.18	-0.6
1,405,181	-		GFF1381	0.18	-0.6
1,405,224	+		GFF1381	0.21	+0.4
1,405,224	+		GFF1381	0.21	+1.1
1,405,234	+		GFF1381	0.22	-1.5
1,405,236	-		GFF1381	0.22	-1.7
1,405,242	-		GFF1381	0.23	+1.1
1,405,242	-		GFF1381	0.23	-1.2
1,405,287	+		GFF1381	0.27	-0.7
1,405,313	-		GFF1381	0.29	+0.5
1,405,329	+		GFF1381	0.30	+0.1
1,405,337	-		GFF1381	0.31	-0.2
1,405,348	+		GFF1381	0.32	+0.4
1,405,356	-		GFF1381	0.33	+0.5
1,405,356	-		GFF1381	0.33	+0.9
1,405,356	-		GFF1381	0.33	-0.4
1,405,379	-		GFF1381	0.35	-0.6
1,405,415	+		GFF1381	0.38	+1.2
1,405,434	+		GFF1381	0.39	-0.9
1,405,445	-		GFF1381	0.40	-1.3
1,405,475	-		GFF1381	0.43	-0.1
1,405,513	+		GFF1381	0.46	-0.4
1,405,517	-		GFF1381	0.46	+1.2
1,405,568	+		GFF1381	0.51	-0.4
1,405,613	-		GFF1381	0.54	+0.3
1,405,630	+		GFF1381	0.56	-0.3
1,405,640	+		GFF1381	0.57	-1.1
1,405,648	-		GFF1381	0.57	-0.2
1,405,709	-		GFF1381	0.63	-0.4
1,405,721	-		GFF1381	0.64	-0.9
1,405,734	+		GFF1381	0.65	-0.2
1,405,735	+		GFF1381	0.65	+0.5
1,405,741	+		GFF1381	0.65	-0.5
1,405,742	-		GFF1381	0.65	-0.5
1,405,742	-		GFF1381	0.65	-0.4
1,405,756	+		GFF1381	0.67	-0.3
1,405,760	+		GFF1381	0.67	+0.2
1,405,760	+		GFF1381	0.67	+0.2
1,405,761	+		GFF1381	0.67	-0.0
1,405,761	+		GFF1381	0.67	-1.3
1,405,761	+		GFF1381	0.67	+0.6
1,405,761	+		GFF1381	0.67	+1.6
1,405,761	+		GFF1381	0.67	-0.2
1,405,761	+		GFF1381	0.67	-0.5
1,405,761	+		GFF1381	0.67	-1.1
1,405,761	+		GFF1381	0.67	-0.5
1,405,766	+		GFF1381	0.68	-0.8
1,405,766	+		GFF1381	0.68	-0.1
1,405,769	-		GFF1381	0.68	+1.5
1,405,769	-		GFF1381	0.68	-0.7
1,405,769	-		GFF1381	0.68	-0.5
1,405,769	-		GFF1381	0.68	-0.7
1,405,769	-		GFF1381	0.68	-0.4
1,405,769	-		GFF1381	0.68	-1.1
1,405,769	-		GFF1381	0.68	+0.5
1,405,769	-		GFF1381	0.68	+0.1
1,405,769	-		GFF1381	0.68	-1.5
1,405,769	-		GFF1381	0.68	-0.2
1,405,769	-		GFF1381	0.68	+1.4
1,405,769	-		GFF1381	0.68	-0.2
1,405,779	-		GFF1381	0.69	+0.7
1,405,785	+		GFF1381	0.69	-1.8
1,405,788	+		GFF1381	0.69	-1.7
1,405,793	+		GFF1381	0.70	-0.2
1,405,793	+		GFF1381	0.70	-1.5
1,405,793	+		GFF1381	0.70	-2.5
1,405,795	-		GFF1381	0.70	+1.8
1,405,801	-		GFF1381	0.71	-0.5
1,405,804	-		GFF1381	0.71	+0.3
1,405,806	+		GFF1381	0.71	+0.9
1,405,820	+		GFF1381	0.72	-3.0
1,405,820	+		GFF1381	0.72	+0.9
1,405,820	+		GFF1381	0.72	-1.6
1,405,820	+		GFF1381	0.72	+0.5
1,405,820	+		GFF1381	0.72	-0.9
1,405,823	+		GFF1381	0.72	+0.5
1,405,828	-		GFF1381	0.73	-2.3
1,405,828	-		GFF1381	0.73	-2.4
1,405,828	-		GFF1381	0.73	-1.4
1,405,828	-		GFF1381	0.73	+0.3
1,405,828	-		GFF1381	0.73	-0.4
1,405,828	-		GFF1381	0.73	+0.2
1,405,911	+		GFF1381	0.80	-0.0
1,405,912	-		GFF1381	0.80	+0.5
1,405,918	-		GFF1381	0.80	+0.2
1,405,923	+		GFF1381	0.81	+0.2
1,405,928	+		GFF1381	0.81	-1.4
1,405,931	-		GFF1381	0.82	+0.8
1,405,936	-		GFF1381	0.82	-1.1
1,405,936	-		GFF1381	0.82	+0.3
1,405,936	-		GFF1381	0.82	-2.8
1,405,936	-		GFF1381	0.82	-0.2
1,405,952	+		GFF1381	0.83	-0.2
1,405,952	+		GFF1381	0.83	+0.0
1,405,960	-		GFF1381	0.84	-1.0
1,405,982	-		GFF1381	0.86	-1.3
1,405,985	+		GFF1381	0.86	+0.3
1,405,988	+		GFF1381	0.86	+0.5
1,405,988	-		GFF1381	0.86	+0.1
1,406,014	+		GFF1381	0.89	+0.2
1,406,014	+		GFF1381	0.89	-1.2
1,406,037	+				-0.3
1,406,038	-				-1.0
1,406,047	+				+0.2
1,406,057	+				-1.4
1,406,057	+				-1.5
1,406,060	-				-0.4
1,406,065	-				-1.3
1,406,084	-				-0.7
1,406,104	+				-1.2
1,406,130	+				-0.8
1,406,130	+				+1.1
1,406,138	-				-0.8
1,406,138	-				-0.6
1,406,138	-				-0.7
1,406,138	-				-1.8
1,406,138	-				-0.5
1,406,138	-				-2.1
1,406,143	+				+0.2
1,406,189	+				+0.0
1,406,198	-				-2.2
1,406,247	+				-1.4
1,406,257	+				-0.1
1,406,265	-				+0.1
1,406,301	-		GFF1382	0.14	-0.7
1,406,307	-		GFF1382	0.15	-0.5
1,406,358	-		GFF1382	0.24	+0.0
1,406,371	+		GFF1382	0.26	-0.0
1,406,373	-		GFF1382	0.27	-1.5
1,406,378	-		GFF1382	0.27	-0.4
1,406,392	-		GFF1382	0.30	-1.4
1,406,397	+		GFF1382	0.31	+0.8
1,406,402	+		GFF1382	0.32	-1.5
1,406,407	+		GFF1382	0.32	-0.1
1,406,439	-		GFF1382	0.38	+0.4
1,406,439	-		GFF1382	0.38	+0.4
1,406,444	+		GFF1382	0.39	-0.6
1,406,447	+		GFF1382	0.39	+1.1
1,406,452	-		GFF1382	0.40	+0.3
1,406,452	-		GFF1382	0.40	-0.8
1,406,472	-		GFF1382	0.44	-0.8
1,406,481	+		GFF1382	0.45	+0.5
1,406,501	+		GFF1382	0.49	+0.3
1,406,501	+		GFF1382	0.49	-1.7
1,406,501	+		GFF1382	0.49	-1.2
1,406,501	+		GFF1382	0.49	-0.2
1,406,509	-		GFF1382	0.50	-0.2
1,406,541	-		GFF1382	0.56	+0.7
1,406,566	+		GFF1382	0.60	+0.0
1,406,576	+		GFF1382	0.62	-1.6
1,406,576	+		GFF1382	0.62	-0.2
1,406,576	+		GFF1382	0.62	+0.3
1,406,581	+		GFF1382	0.63	+0.1
1,406,581	+		GFF1382	0.63	-1.3
1,406,589	-		GFF1382	0.64	-0.5
1,406,589	-		GFF1382	0.64	+0.4
1,406,594	-		GFF1382	0.65	-2.2
1,406,617	+		GFF1382	0.69	-0.9
1,406,617	+		GFF1382	0.69	-0.2
1,406,617	+		GFF1382	0.69	-0.1
1,406,617	+		GFF1382	0.69	+0.4
1,406,625	-		GFF1382	0.70	+0.6
1,406,625	-		GFF1382	0.70	-0.8
1,406,625	-		GFF1382	0.70	-1.4
1,406,625	-		GFF1382	0.70	-1.6
1,406,685	+		GFF1382	0.80	+1.4
1,406,702	+		GFF1382	0.83	+0.5
1,406,707	+		GFF1382	0.84	+0.4
1,406,707	+		GFF1382	0.84	+0.0
1,406,710	-		GFF1382	0.85	-0.3
1,406,710	-		GFF1382	0.85	-0.4
1,406,710	-		GFF1382	0.85	-0.6
1,406,726	+		GFF1382	0.88	+0.4
1,406,726	+		GFF1382	0.88	-0.4
1,406,742	+				-0.3
1,406,747	+				+0.2
1,406,748	+				-0.9
1,406,748	+				-1.5
1,406,748	+				-2.0
1,406,748	+				-1.6
1,406,756	-				-0.2
1,406,756	-				-0.9
1,406,756	-				-0.6
1,406,756	-				+0.2
1,406,756	-				-0.2
1,406,758	+				-1.0
1,406,758	+				-0.3
1,406,765	+				-1.6
1,406,766	-				+0.3
1,406,766	-				+0.5
1,406,773	-				-1.8
1,406,781	+				-0.6
1,406,809	+				-1.5
1,406,842	+				+0.6
1,406,851	-				-0.7
1,406,867	-				+0.4
1,406,878	+				-0.2
1,406,880	+				-1.3
1,406,880	+				-1.5
1,406,895	+		GFF1383	0.11	+0.3
1,406,895	+		GFF1383	0.11	-0.2
1,406,898	-		GFF1383	0.11	+0.1
1,406,903	-		GFF1383	0.12	+0.2
1,406,907	+		GFF1383	0.12	+0.4
1,406,909	-		GFF1383	0.12	-0.5
1,406,912	+		GFF1383	0.13	-1.2
1,406,912	+		GFF1383	0.13	-1.5
1,406,912	+		GFF1383	0.13	-0.2
1,406,912	+		GFF1383	0.13	-0.1
1,406,912	+		GFF1383	0.13	+0.3
1,406,912	+		GFF1383	0.13	+0.4
1,406,917	+		GFF1383	0.13	-0.1
1,406,920	-		GFF1383	0.13	-1.4
1,406,920	-		GFF1383	0.13	-1.5
1,406,920	-		GFF1383	0.13	+0.8
1,406,920	-		GFF1383	0.13	-0.1
1,406,920	-		GFF1383	0.13	+0.3
1,406,920	-		GFF1383	0.13	-1.3
1,406,920	-		GFF1383	0.13	-0.6
1,406,920	-		GFF1383	0.13	-1.8
1,406,920	-		GFF1383	0.13	+0.2
1,406,920	-		GFF1383	0.13	-2.6
1,406,920	-		GFF1383	0.13	+1.2
1,406,925	+		GFF1383	0.14	-0.8
1,406,925	-		GFF1383	0.14	+1.5
1,406,925	-		GFF1383	0.14	+0.3
1,406,940	+		GFF1383	0.15	-0.6
1,406,948	-		GFF1383	0.16	-1.3
1,407,000	+		GFF1383	0.22	-1.1
1,407,000	+		GFF1383	0.22	-0.5
1,407,000	+		GFF1383	0.22	-0.4
1,407,011	+		GFF1383	0.23	-0.2
1,407,011	+		GFF1383	0.23	+0.8
1,407,014	-		GFF1383	0.23	-1.6
1,407,031	+		GFF1383	0.25	+0.3
1,407,032	+		GFF1383	0.25	-2.0
1,407,066	-		GFF1383	0.29	-0.6
1,407,066	-		GFF1383	0.29	+1.5
1,407,090	+		GFF1383	0.31	+1.2
1,407,093	+		GFF1383	0.32	-1.1
1,407,103	+		GFF1383	0.33	-1.5
1,407,103	+		GFF1383	0.33	+0.6
1,407,123	+		GFF1383	0.35	-0.4
1,407,131	-		GFF1383	0.36	-1.4