Strain Fitness in Sphingobium sp. HT1-2 around GFF1375

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,397,808	-		GFF1374	0.23	-0.1
1,397,808	-		GFF1374	0.23	-1.1
1,397,824	+		GFF1374	0.24	-1.2
1,397,829	+		GFF1374	0.24	-2.1
1,397,837	+		GFF1374	0.25	+0.2
1,397,837	-		GFF1374	0.25	-0.4
1,397,845	-		GFF1374	0.26	+0.9
1,397,853	+		GFF1374	0.27	+0.4
1,397,876	+		GFF1374	0.28	-0.9
1,397,877	+		GFF1374	0.28	-0.6
1,397,877	+		GFF1374	0.28	-1.4
1,397,884	-		GFF1374	0.29	+0.2
1,397,885	-		GFF1374	0.29	-0.0
1,397,885	-		GFF1374	0.29	-0.7
1,397,888	+		GFF1374	0.29	-2.2
1,397,918	+		GFF1374	0.32	+0.4
1,397,918	+		GFF1374	0.32	-0.6
1,397,918	+		GFF1374	0.32	-1.3
1,397,926	-		GFF1374	0.33	+0.2
1,397,926	-		GFF1374	0.33	+1.0
1,397,926	-		GFF1374	0.33	-0.4
1,397,955	-		GFF1374	0.35	-0.2
1,397,958	+		GFF1374	0.35	-1.8
1,397,958	+		GFF1374	0.35	-0.4
1,397,958	+		GFF1374	0.35	-1.6
1,397,958	+		GFF1374	0.35	-1.9
1,397,966	-		GFF1374	0.36	-0.0
1,397,966	-		GFF1374	0.36	-1.5
1,398,003	+		GFF1374	0.39	-1.3
1,398,003	+		GFF1374	0.39	-2.2
1,398,007	-		GFF1374	0.39	-0.5
1,398,011	-		GFF1374	0.40	+0.0
1,398,016	+		GFF1374	0.40	-0.1
1,398,047	+		GFF1374	0.43	+0.4
1,398,056	+		GFF1374	0.43	-1.0
1,398,069	-		GFF1374	0.45	-1.2
1,398,069	-		GFF1374	0.45	-1.1
1,398,069	-		GFF1374	0.45	-1.4
1,398,073	+		GFF1374	0.45	+0.6
1,398,104	+		GFF1374	0.47	-1.4
1,398,116	-		GFF1374	0.48	+0.4
1,398,121	-		GFF1374	0.49	-0.5
1,398,121	-		GFF1374	0.49	+0.4
1,398,150	-		GFF1374	0.51	-1.9
1,398,157	+		GFF1374	0.52	-1.5
1,398,167	+		GFF1374	0.53	+1.1
1,398,167	+		GFF1374	0.53	+0.1
1,398,167	+		GFF1374	0.53	+0.2
1,398,170	-		GFF1374	0.53	-0.3
1,398,175	-		GFF1374	0.53	-1.6
1,398,175	-		GFF1374	0.53	+1.8
1,398,185	+		GFF1374	0.54	+0.4
1,398,197	+		GFF1374	0.55	-1.1
1,398,198	+		GFF1374	0.55	-0.1
1,398,205	-		GFF1374	0.56	+0.0
1,398,205	-		GFF1374	0.56	-0.5
1,398,206	-		GFF1374	0.56	-1.8
1,398,214	-		GFF1374	0.57	-0.3
1,398,242	+		GFF1374	0.59	-1.7
1,398,242	+		GFF1374	0.59	-2.7
1,398,242	+		GFF1374	0.59	-0.8
1,398,242	+		GFF1374	0.59	+0.3
1,398,242	+		GFF1374	0.59	-0.3
1,398,242	+		GFF1374	0.59	+0.1
1,398,242	+		GFF1374	0.59	+1.4
1,398,242	+		GFF1374	0.59	-2.2
1,398,248	-		GFF1374	0.59	+0.5
1,398,250	-		GFF1374	0.60	-1.0
1,398,250	-		GFF1374	0.60	-1.2
1,398,250	-		GFF1374	0.60	-0.8
1,398,250	-		GFF1374	0.60	-0.7
1,398,250	-		GFF1374	0.60	+1.9
1,398,277	-		GFF1374	0.62	-1.3
1,398,288	+		GFF1374	0.63	-0.2
1,398,332	+		GFF1374	0.66	-0.7
1,398,340	-		GFF1374	0.67	-0.2
1,398,340	-		GFF1374	0.67	-1.1
1,398,340	-		GFF1374	0.67	-2.5
1,398,341	+		GFF1374	0.67	-1.0
1,398,353	-		GFF1374	0.68	-0.6
1,398,360	-		GFF1374	0.69	+0.3
1,398,368	-		GFF1374	0.69	+0.6
1,398,372	+		GFF1374	0.70	+0.5
1,398,372	+		GFF1374	0.70	+1.4
1,398,377	+		GFF1374	0.70	-0.5
1,398,379	+		GFF1374	0.70	-0.6
1,398,380	-		GFF1374	0.70	-1.2
1,398,387	-		GFF1374	0.71	-0.2
1,398,395	+		GFF1374	0.72	-0.5
1,398,415	+		GFF1374	0.73	-0.6
1,398,421	+		GFF1374	0.74	-0.1
1,398,429	-		GFF1374	0.74	-1.0
1,398,435	+		GFF1374	0.75	+0.5
1,398,436	+		GFF1374	0.75	-0.4
1,398,436	+		GFF1374	0.75	+1.6
1,398,455	+		GFF1374	0.77	-1.5
1,398,459	+		GFF1374	0.77	+1.5
1,398,459	+		GFF1374	0.77	-0.2
1,398,460	+		GFF1374	0.77	+0.2
1,398,465	+		GFF1374	0.78	-1.2
1,398,470	+		GFF1374	0.78	-1.7
1,398,473	-		GFF1374	0.78	+0.4
1,398,475	+		GFF1374	0.78	-0.8
1,398,475	+		GFF1374	0.78	-1.4
1,398,495	+		GFF1374	0.80	+0.0
1,398,502	+		GFF1374	0.81	-0.2
1,398,503	-		GFF1374	0.81	-1.1
1,398,515	+		GFF1374	0.82	-0.5
1,398,516	+		GFF1374	0.82	-0.1
1,398,516	+		GFF1374	0.82	-1.4
1,398,516	+		GFF1374	0.82	-1.4
1,398,516	+		GFF1374	0.82	-0.3
1,398,516	+		GFF1374	0.82	+0.2
1,398,523	-		GFF1374	0.82	+1.8
1,398,523	-		GFF1374	0.82	-1.2
1,398,524	-		GFF1374	0.82	+0.8
1,398,524	-		GFF1374	0.82	-0.5
1,398,524	-		GFF1374	0.82	+0.1
1,398,524	-		GFF1374	0.82	+0.6
1,398,524	-		GFF1374	0.82	-2.1
1,398,524	-		GFF1374	0.82	+0.1
1,398,526	+		GFF1374	0.83	+1.2
1,398,526	+		GFF1374	0.83	-0.8
1,398,526	+		GFF1374	0.83	+1.1
1,398,527	+		GFF1374	0.83	-0.3
1,398,529	-		GFF1374	0.83	+0.5
1,398,533	-		GFF1374	0.83	-2.2
1,398,534	+		GFF1374	0.83	+0.1
1,398,534	+		GFF1374	0.83	+0.0
1,398,534	+		GFF1374	0.83	-0.4
1,398,534	+		GFF1374	0.83	+0.8
1,398,534	+		GFF1374	0.83	-1.3
1,398,534	+		GFF1374	0.83	-0.9
1,398,534	-		GFF1374	0.83	-0.7
1,398,534	-		GFF1374	0.83	-0.4
1,398,534	-		GFF1374	0.83	-0.6
1,398,534	-		GFF1374	0.83	+1.2
1,398,542	-		GFF1374	0.84	+0.3
1,398,560	+		GFF1374	0.85	+0.5
1,398,567	-		GFF1374	0.86	-0.8
1,398,567	-		GFF1374	0.86	-1.1
1,398,567	-		GFF1374	0.86	-2.5
1,398,568	-		GFF1374	0.86	+0.0
1,398,594	+		GFF1374	0.88	+0.6
1,398,624	-				+1.4
1,398,624	-				-2.1
1,398,645	+				-1.6
1,398,679	+				-0.3
1,398,687	-				-1.4
1,398,696	+				+1.0
1,398,697	+				+0.0
1,398,704	-				-0.8
1,398,705	-				-0.2
1,398,705	-				+0.7
1,398,709	-				-1.9
1,398,709	-				-1.2
1,398,728	+				+0.1
1,398,728	+				-0.6
1,398,733	+				+0.2
1,398,736	-				-1.0
1,398,736	-				+0.1
1,398,753	+				-0.1
1,398,753	+				-0.2
1,398,753	+				+0.4
1,398,761	-				+1.1
1,398,761	-				-0.9
1,398,761	-				+0.8
1,398,761	-				-2.4
1,398,764	+				+0.3
1,398,772	-				-2.6
1,398,772	-				-0.9
1,398,774	+				-0.5
1,398,782	-				+1.1
1,398,826	+				-0.6
1,398,855	-				+1.4
1,398,855	-				-0.8
1,398,863	-				+0.6
1,398,865	-				-0.4
1,398,872	-				-0.8
1,398,873	-				+0.4
1,398,877	+				-1.0
1,398,879	-				+0.4
1,398,915	+		GFF1375	0.12	+0.8
1,398,915	+		GFF1375	0.12	+0.1
1,398,915	+		GFF1375	0.12	+0.1
1,398,915	+		GFF1375	0.12	-1.4
1,398,923	+		GFF1375	0.13	-2.3
1,398,923	-		GFF1375	0.13	+0.1
1,398,923	-		GFF1375	0.13	-0.2
1,398,923	-		GFF1375	0.13	+0.0
1,398,935	+		GFF1375	0.15	+0.4
1,398,956	+		GFF1375	0.17	+0.6
1,398,968	+		GFF1375	0.18	-1.3
1,398,976	-		GFF1375	0.19	-0.5
1,398,978	+		GFF1375	0.19	-0.9
1,398,993	+		GFF1375	0.21	+1.0
1,398,997	+		GFF1375	0.22	-1.1
1,398,997	+		GFF1375	0.22	+0.1
1,398,997	+		GFF1375	0.22	+0.0
1,399,008	+		GFF1375	0.23	-1.4
1,399,008	+		GFF1375	0.23	-1.9
1,399,009	-		GFF1375	0.23	-1.6
1,399,014	-		GFF1375	0.23	-0.9
1,399,016	-		GFF1375	0.24	-0.6
1,399,028	+		GFF1375	0.25	-1.2
1,399,039	-		GFF1375	0.26	+0.1
1,399,050	+		GFF1375	0.27	-2.2
1,399,050	+		GFF1375	0.27	-0.5
1,399,051	+		GFF1375	0.28	-0.2
1,399,063	-		GFF1375	0.29	-0.6
1,399,066	+		GFF1375	0.29	+0.7
1,399,070	-		GFF1375	0.30	+0.2
1,399,071	+		GFF1375	0.30	-0.3
1,399,074	-		GFF1375	0.30	-2.2
1,399,079	-		GFF1375	0.31	-1.7
1,399,101	+		GFF1375	0.33	-0.2
1,399,107	+		GFF1375	0.34	-0.8
1,399,152	-		GFF1375	0.39	-0.4
1,399,166	+		GFF1375	0.40	-0.2
1,399,166	+		GFF1375	0.40	-0.4
1,399,166	+		GFF1375	0.40	+0.6
1,399,185	+		GFF1375	0.42	-0.9
1,399,196	+		GFF1375	0.44	-1.4
1,399,204	-		GFF1375	0.45	-0.2
1,399,206	+		GFF1375	0.45	+0.4
1,399,212	+		GFF1375	0.45	-0.7
1,399,214	-		GFF1375	0.46	-1.4
1,399,214	-		GFF1375	0.46	-0.4
1,399,214	-		GFF1375	0.46	-0.9
1,399,214	-		GFF1375	0.46	-0.3
1,399,215	-		GFF1375	0.46	-0.2
1,399,220	-		GFF1375	0.46	-0.8
1,399,227	+		GFF1375	0.47	+0.6
1,399,227	+		GFF1375	0.47	-1.4
1,399,233	+		GFF1375	0.48	-1.7
1,399,233	+		GFF1375	0.48	+1.1
1,399,233	+		GFF1375	0.48	-0.3
1,399,233	+		GFF1375	0.48	-0.2
1,399,299	+		GFF1375	0.55	-1.0
1,399,299	+		GFF1375	0.55	-2.6
1,399,299	+		GFF1375	0.55	-1.5
1,399,299	+		GFF1375	0.55	-1.9
1,399,307	-		GFF1375	0.56	-1.5
1,399,307	-		GFF1375	0.56	-0.4
1,399,342	+		GFF1375	0.60	+0.1
1,399,342	+		GFF1375	0.60	-0.5
1,399,344	+		GFF1375	0.60	-0.1
1,399,364	+		GFF1375	0.62	-1.0
1,399,365	-		GFF1375	0.63	-0.9
1,399,365	-		GFF1375	0.63	-0.1
1,399,372	-		GFF1375	0.63	-0.1
1,399,375	+		GFF1375	0.64	+1.1
1,399,393	+		GFF1375	0.66	-0.4
1,399,420	+		GFF1375	0.69	+0.0
1,399,438	-		GFF1375	0.71	+0.7
1,399,473	+		GFF1375	0.75	-0.0
1,399,473	+		GFF1375	0.75	-0.4
1,399,481	+		GFF1375	0.75	+1.4
1,399,481	+		GFF1375	0.75	-0.4
1,399,481	-		GFF1375	0.75	-0.9
1,399,489	-		GFF1375	0.76	+1.0
1,399,489	-		GFF1375	0.76	-0.1
1,399,500	+		GFF1375	0.78	+0.5
1,399,508	-		GFF1375	0.78	+0.6
1,399,508	-		GFF1375	0.78	-1.5
1,399,541	-		GFF1375	0.82	-0.2
1,399,589	+		GFF1375	0.88	+0.0
1,399,597	-		GFF1375	0.88	-1.6
1,399,624	-				-1.5
1,399,641	+				+0.5
1,399,641	+				+0.3
1,399,641	+				+1.1
1,399,641	+				-1.4
1,399,641	+				-1.8
1,399,641	+				-0.1
1,399,649	-				-0.8
1,399,649	-				-0.9
1,399,649	-				+0.9
1,399,649	-				-1.3
1,399,659	-				-0.3
1,399,660	+				+0.5
1,399,792	-				-1.0
1,399,799	+				+0.0
1,399,799	+				-0.5
1,399,799	+				+0.2
1,399,799	+				-1.4
1,399,799	+				-2.1
1,399,799	+				-0.4
1,399,799	+				+0.1
1,399,799	+				+0.8
1,399,799	+				-0.4
1,399,807	-				+0.5
1,399,807	-				+1.8
1,399,807	-				-1.5
1,399,807	-				-0.2
1,399,807	-				+0.4
1,399,807	-				+1.1
1,399,807	-				-0.3
1,399,818	+				-1.4
1,399,866	+		GFF1376	0.14	-0.0
1,399,869	-		GFF1376	0.14	-0.1
1,399,871	+		GFF1376	0.15	-0.1
1,399,884	-		GFF1376	0.18	-0.7
1,399,884	-		GFF1376	0.18	+0.2
1,399,895	+		GFF1376	0.21	-1.7
1,399,900	+		GFF1376	0.23	+0.8
1,399,900	+		GFF1376	0.23	+1.6
1,399,903	-		GFF1376	0.23	-2.3
1,399,908	-		GFF1376	0.25	+1.4
1,399,908	-		GFF1376	0.25	+0.1
1,399,936	-		GFF1376	0.32	+0.0
1,399,938	+		GFF1376	0.33	-1.2
1,399,944	+		GFF1376	0.34	+0.6
1,399,950	-		GFF1376	0.36	-0.6
1,399,960	+		GFF1376	0.38	+0.1
1,399,975	+		GFF1376	0.42	+0.1
1,400,004	-		GFF1376	0.50	-1.3
1,400,004	-		GFF1376	0.50	+0.3
1,400,004	-		GFF1376	0.50	+0.6
1,400,014	-		GFF1376	0.52	-0.3
1,400,050	-		GFF1376	0.62	-0.9
1,400,055	-		GFF1376	0.63	+1.8
1,400,084	+		GFF1376	0.71	+1.5
1,400,089	+		GFF1376	0.72	-2.1
1,400,097	-		GFF1376	0.74	+0.4
1,400,102	+		GFF1376	0.76	-0.1
1,400,103	+		GFF1376	0.76	+1.1
1,400,112	+		GFF1376	0.78	-1.5
1,400,114	+		GFF1376	0.79	-0.7
1,400,120	-		GFF1376	0.80	+1.8
1,400,122	-		GFF1376	0.81	-1.4
1,400,124	+		GFF1376	0.81	+0.5
1,400,134	+		GFF1376	0.84	+2.0
1,400,134	+		GFF1376	0.84	-2.1
1,400,142	-		GFF1376	0.86	+2.1
1,400,142	-		GFF1376	0.86	+0.4
1,400,142	-		GFF1376	0.86	-1.3
1,400,167	-				-1.1
1,400,255	+				-0.1
1,400,278	+				+0.5
1,400,286	-				+0.5
1,400,297	+				-0.0
1,400,305	+				+0.8
1,400,318	+				+1.8
1,400,318	+				-0.3
1,400,326	-				-1.7
1,400,359	+				-0.0
1,400,359	+				-2.5
1,400,359	+				-0.4
1,400,359	+				-0.6
1,400,366	+				-0.4
1,400,366	-				-1.2
1,400,367	-				-0.8
1,400,367	-				-0.2
1,400,374	-				+1.0
1,400,374	-				-0.9
1,400,389	+				+0.1
1,400,400	+				-0.7
1,400,405	+				+0.8
1,400,408	-				-1.1
1,400,413	-				-0.3
1,400,422	+				+1.0
1,400,422	+				-0.1
1,400,430	-				-0.5
1,400,435	-				-2.6
1,400,476	+		GFF1377	0.11	-1.3
1,400,486	-		GFF1377	0.12	-0.9
1,400,491	+		GFF1377	0.12	-0.6
1,400,491	-		GFF1377	0.12	-0.0
1,400,492	+		GFF1377	0.12	-0.9
1,400,540	+		GFF1377	0.16	+1.8
1,400,540	+		GFF1377	0.16	-0.1
1,400,548	-		GFF1377	0.17	-2.2
1,400,574	+		GFF1377	0.19	-1.6
1,400,578	-		GFF1377	0.19	-0.5
1,400,598	+		GFF1377	0.21	-0.6
1,400,598	+		GFF1377	0.21	-0.2
1,400,598	+		GFF1377	0.21	+0.0
1,400,606	-		GFF1377	0.22	+1.4
1,400,606	-		GFF1377	0.22	-0.5
1,400,606	-		GFF1377	0.22	-1.2
1,400,616	-		GFF1377	0.22	-0.1
1,400,616	-		GFF1377	0.22	-0.4
1,400,616	-		GFF1377	0.22	+0.4
1,400,624	+		GFF1377	0.23	-2.7
1,400,656	+		GFF1377	0.26	-0.8
1,400,657	+		GFF1377	0.26	-2.3
1,400,664	-		GFF1377	0.26	+2.1
1,400,678	+		GFF1377	0.27	-1.5
1,400,684	+		GFF1377	0.28	-0.3
1,400,684	+		GFF1377	0.28	-0.3
1,400,684	+		GFF1377	0.28	+0.5
1,400,688	+		GFF1377	0.28	-0.8
1,400,688	+		GFF1377	0.28	+0.5
1,400,692	-		GFF1377	0.28	+0.7
1,400,694	+		GFF1377	0.29	-0.7
1,400,694	+		GFF1377	0.29	+0.1
1,400,694	+		GFF1377	0.29	-0.6
1,400,694	+		GFF1377	0.29	+1.1