Strain Fitness in Sphingobium sp. HT1-2 around GFF1366

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,388,309	-		GFF1364	0.44	-2.2
1,388,309	-		GFF1364	0.44	+0.1
1,388,350	+		GFF1364	0.47	-0.4
1,388,356	+		GFF1364	0.47	-1.2
1,388,363	-		GFF1364	0.48	+0.4
1,388,364	-		GFF1364	0.48	+0.6
1,388,364	-		GFF1364	0.48	-2.0
1,388,379	-		GFF1364	0.49	+0.3
1,388,397	+		GFF1364	0.50	+0.1
1,388,397	-		GFF1364	0.50	-0.5
1,388,397	-		GFF1364	0.50	-0.8
1,388,450	+		GFF1364	0.54	+0.2
1,388,450	+		GFF1364	0.54	-0.9
1,388,454	+		GFF1364	0.54	+0.1
1,388,456	-		GFF1364	0.54	+0.2
1,388,462	-		GFF1364	0.55	+0.9
1,388,462	-		GFF1364	0.55	+0.3
1,388,498	-		GFF1364	0.57	-2.6
1,388,498	-		GFF1364	0.57	-1.2
1,388,501	+		GFF1364	0.58	-0.1
1,388,506	-		GFF1364	0.58	-1.5
1,388,511	+		GFF1364	0.58	-1.3
1,388,516	+		GFF1364	0.59	-0.4
1,388,519	-		GFF1364	0.59	+0.2
1,388,519	-		GFF1364	0.59	-1.7
1,388,520	-		GFF1364	0.59	-1.5
1,388,564	-		GFF1364	0.62	+0.1
1,388,566	+		GFF1364	0.62	+0.6
1,388,569	-		GFF1364	0.62	-0.4
1,388,571	+		GFF1364	0.63	-0.5
1,388,591	+		GFF1364	0.64	-1.0
1,388,591	+		GFF1364	0.64	-0.2
1,388,591	+		GFF1364	0.64	+0.5
1,388,596	+		GFF1364	0.64	-1.9
1,388,596	+		GFF1364	0.64	+0.1
1,388,599	-		GFF1364	0.65	-0.5
1,388,599	-		GFF1364	0.65	+0.3
1,388,599	-		GFF1364	0.65	-2.0
1,388,599	-		GFF1364	0.65	+0.2
1,388,601	+		GFF1364	0.65	+0.6
1,388,601	+		GFF1364	0.65	-0.9
1,388,604	-		GFF1364	0.65	-1.3
1,388,604	-		GFF1364	0.65	-1.4
1,388,604	-		GFF1364	0.65	-1.6
1,388,606	+		GFF1364	0.65	+0.4
1,388,609	-		GFF1364	0.65	-1.5
1,388,609	-		GFF1364	0.65	+0.4
1,388,609	-		GFF1364	0.65	-0.8
1,388,609	-		GFF1364	0.65	-0.9
1,388,614	-		GFF1364	0.66	-0.1
1,388,657	-		GFF1364	0.69	-0.2
1,388,681	+		GFF1364	0.70	-0.3
1,388,722	+		GFF1364	0.73	-0.5
1,388,740	-		GFF1364	0.75	-0.1
1,388,778	+		GFF1364	0.77	-0.8
1,388,797	-		GFF1364	0.79	-3.2
1,388,825	+		GFF1364	0.81	-0.2
1,388,839	-		GFF1364	0.82	+1.5
1,388,878	+		GFF1364	0.84	+0.6
1,388,898	-		GFF1364	0.86	+0.7
1,388,906	+		GFF1364	0.86	+0.6
1,388,906	+		GFF1364	0.86	-1.4
1,388,914	-		GFF1364	0.87	-0.3
1,388,951	-		GFF1364	0.90	-0.4
1,388,951	-		GFF1364	0.90	-0.7
1,388,975	+				-0.7
1,388,975	+				+0.5
1,388,983	-				-1.3
1,388,983	-				+0.3
1,388,983	-				-2.0
1,388,983	-				-1.4
1,388,983	-				-1.4
1,388,983	-				-1.9
1,388,983	-				+0.6
1,388,983	-				-1.4
1,388,983	-				-2.5
1,388,985	-				+0.3
1,388,987	-				+1.3
1,389,020	+				-1.5
1,389,030	-				-0.6
1,389,035	-				-1.6
1,389,045	+				-0.4
1,389,045	+				+0.1
1,389,047	+				+1.1
1,389,068	-				+0.2
1,389,071	+				-1.7
1,389,089	-				-0.2
1,389,138	+		GFF1365	0.23	-0.6
1,389,148	+		GFF1365	0.29	-0.2
1,389,152	-		GFF1365	0.31	+0.7
1,389,159	-		GFF1365	0.34	-0.3
1,389,161	+		GFF1365	0.35	-1.6
1,389,161	-		GFF1365	0.35	-1.5
1,389,161	-		GFF1365	0.35	-2.1
1,389,189	+		GFF1365	0.50	-0.9
1,389,189	+		GFF1365	0.50	-0.4
1,389,189	+		GFF1365	0.50	+0.7
1,389,190	+		GFF1365	0.51	+0.6
1,389,190	+		GFF1365	0.51	-2.6
1,389,190	+		GFF1365	0.51	-2.2
1,389,190	+		GFF1365	0.51	-1.0
1,389,198	-		GFF1365	0.55	-1.8
1,389,198	-		GFF1365	0.55	-0.2
1,389,198	-		GFF1365	0.55	+1.5
1,389,198	-		GFF1365	0.55	-0.2
1,389,199	+		GFF1365	0.55	-1.8
1,389,209	+		GFF1365	0.60	-1.4
1,389,218	+		GFF1365	0.65	+0.9
1,389,219	+		GFF1365	0.66	-0.7
1,389,224	-		GFF1365	0.68	+0.2
1,389,227	-		GFF1365	0.70	+0.1
1,389,227	-		GFF1365	0.70	-1.9
1,389,232	+		GFF1365	0.72	-1.5
1,389,240	-		GFF1365	0.77	-1.0
1,389,243	+		GFF1365	0.78	+0.7
1,389,243	+		GFF1365	0.78	-0.8
1,389,245	-		GFF1365	0.79	+1.0
1,389,249	+		GFF1365	0.81	-1.8
1,389,277	-				-0.6
1,389,308	-				+0.2
1,389,326	+				-1.1
1,389,368	-				+0.6
1,389,381	+				+0.2
1,389,389	-				+1.1
1,389,403	+				-0.2
1,389,439	-		GFF1366	0.13	-0.2
1,389,474	-		GFF1366	0.16	+1.1
1,389,475	-		GFF1366	0.16	-0.7
1,389,505	-		GFF1366	0.18	+0.1
1,389,563	+		GFF1366	0.23	-0.5
1,389,569	+		GFF1366	0.23	+0.2
1,389,571	-		GFF1366	0.23	+0.0
1,389,594	+		GFF1366	0.25	-0.1
1,389,604	-		GFF1366	0.26	+0.5
1,389,629	+		GFF1366	0.28	+0.8
1,389,629	+		GFF1366	0.28	-0.4
1,389,629	+		GFF1366	0.28	+0.4
1,389,637	-		GFF1366	0.29	-1.4
1,389,645	-		GFF1366	0.29	-0.1
1,389,673	+		GFF1366	0.32	+0.2
1,389,689	-		GFF1366	0.33	-0.5
1,389,700	+		GFF1366	0.34	+0.8
1,389,700	+		GFF1366	0.34	-2.2
1,389,714	+		GFF1366	0.35	+0.1
1,389,714	+		GFF1366	0.35	+1.0
1,389,722	-		GFF1366	0.36	+0.0
1,389,722	-		GFF1366	0.36	+0.1
1,389,729	+		GFF1366	0.36	+0.4
1,389,737	-		GFF1366	0.37	+1.1
1,389,739	+		GFF1366	0.37	-1.7
1,389,739	+		GFF1366	0.37	-0.4
1,389,739	+		GFF1366	0.37	+0.1
1,389,747	-		GFF1366	0.38	+0.2
1,389,747	-		GFF1366	0.38	-0.5
1,389,747	-		GFF1366	0.38	-0.4
1,389,747	-		GFF1366	0.38	+1.6
1,389,762	+		GFF1366	0.39	+0.1
1,389,762	+		GFF1366	0.39	-0.3
1,389,767	+		GFF1366	0.39	-0.8
1,389,770	-		GFF1366	0.39	-1.0
1,389,770	-		GFF1366	0.39	+0.8
1,389,775	-		GFF1366	0.40	-1.2
1,389,782	+		GFF1366	0.40	+0.8
1,389,782	+		GFF1366	0.40	+0.8
1,389,793	+		GFF1366	0.41	-0.1
1,389,795	+		GFF1366	0.41	-1.1
1,389,795	-		GFF1366	0.41	-1.0
1,389,801	+		GFF1366	0.42	+1.3
1,389,801	+		GFF1366	0.42	-0.5
1,389,809	-		GFF1366	0.43	-1.0
1,389,845	-		GFF1366	0.45	+0.5
1,389,845	-		GFF1366	0.45	-1.2
1,389,850	-		GFF1366	0.46	-1.7
1,389,858	-		GFF1366	0.46	+0.1
1,389,894	+		GFF1366	0.49	+0.1
1,389,914	+		GFF1366	0.51	+0.3
1,389,922	-		GFF1366	0.52	-1.2
1,389,922	-		GFF1366	0.52	-1.5
1,389,922	-		GFF1366	0.52	-0.1
1,389,941	-		GFF1366	0.53	+0.6
1,389,941	-		GFF1366	0.53	-0.1
1,389,977	-		GFF1366	0.56	-0.1
1,390,012	+		GFF1366	0.59	+0.8
1,390,054	-		GFF1366	0.62	+0.4
1,390,111	+		GFF1366	0.67	+0.4
1,390,119	-		GFF1366	0.67	+0.4
1,390,166	-		GFF1366	0.71	+0.0
1,390,170	+		GFF1366	0.72	+0.4
1,390,178	-		GFF1366	0.72	-1.8
1,390,178	-		GFF1366	0.72	+0.7
1,390,178	-		GFF1366	0.72	-1.1
1,390,187	+		GFF1366	0.73	-0.8
1,390,195	-		GFF1366	0.74	-2.4
1,390,198	-		GFF1366	0.74	+1.4
1,390,203	+		GFF1366	0.74	-1.2
1,390,206	-		GFF1366	0.74	-0.5
1,390,206	-		GFF1366	0.74	+0.8
1,390,206	-		GFF1366	0.74	-0.0
1,390,211	-		GFF1366	0.75	-0.4
1,390,216	-		GFF1366	0.75	-0.2
1,390,235	+		GFF1366	0.77	+0.0
1,390,235	+		GFF1366	0.77	+0.8
1,390,243	-		GFF1366	0.77	+1.4
1,390,244	-		GFF1366	0.78	-0.7
1,390,244	-		GFF1366	0.78	-2.6
1,390,246	+		GFF1366	0.78	-0.5
1,390,246	+		GFF1366	0.78	-0.2
1,390,246	+		GFF1366	0.78	+1.1
1,390,253	+		GFF1366	0.78	+1.0
1,390,254	-		GFF1366	0.78	+0.4
1,390,254	-		GFF1366	0.78	-1.3
1,390,288	-		GFF1366	0.81	+0.7
1,390,288	-		GFF1366	0.81	+0.8
1,390,288	-		GFF1366	0.81	+0.4
1,390,288	-		GFF1366	0.81	+0.8
1,390,288	-		GFF1366	0.81	-0.9
1,390,292	+		GFF1366	0.81	+0.1
1,390,299	+		GFF1366	0.82	+1.0
1,390,300	-		GFF1366	0.82	-1.6
1,390,315	+		GFF1366	0.83	+0.6
1,390,322	+		GFF1366	0.84	-1.4
1,390,322	+		GFF1366	0.84	-1.9
1,390,330	-		GFF1366	0.84	-0.2
1,390,330	-		GFF1366	0.84	+1.6
1,390,335	-		GFF1366	0.85	-0.2
1,390,352	+		GFF1366	0.86	+0.1
1,390,393	-		GFF1366	0.90	-0.4
1,390,446	+				-0.1
1,390,454	-				-1.9
1,390,454	-				+0.4
1,390,456	-				-0.3
1,390,464	-				+0.2
1,390,481	-				-0.0
1,390,496	+				+0.2
1,390,531	+				+0.2
1,390,531	+				+0.6
1,390,534	-				+1.4
1,390,539	-				+0.0
1,390,539	-				+0.4
1,390,539	-				-1.1
1,390,539	-				-1.8
1,390,539	-				-0.4
1,390,541	-				+0.3
1,390,542	-				+0.9
1,390,547	-				-2.4
1,390,547	-				+0.6
1,390,568	-				-0.0
1,390,617	+		GFF1367	0.30	+1.4
1,390,672	-		GFF1367	0.72	+0.8
1,390,672	-		GFF1367	0.72	-0.4
1,390,767	+				+0.4
1,390,832	+				+0.4
1,390,840	+				-0.6
1,390,845	+				-0.5
1,390,845	+				+1.0
1,390,845	+				-0.0
1,390,845	+				-0.0
1,390,848	-				-0.0
1,390,853	-				-0.4
1,390,853	-				+0.6
1,390,853	-				-1.2
1,390,853	-				-0.9
1,390,853	-				-0.1
1,390,875	+				-0.6
1,390,875	+				+0.9
1,390,875	+				+0.5
1,390,875	+				-0.3
1,390,875	+				-0.2
1,390,875	+				+0.2
1,390,875	+				-3.3
1,390,875	+				-0.9
1,390,875	+				+0.3
1,390,875	+				-1.6
1,390,875	+				-1.9
1,390,875	+				-0.3
1,390,877	+				-0.4
1,390,877	+				+1.0
1,390,883	-				-0.9
1,390,883	-				-0.0
1,390,883	-				-0.2
1,390,883	-				-0.3
1,390,883	-				-0.6
1,390,883	-				-1.9
1,390,883	-				-1.9
1,390,883	-				-1.1
1,390,883	-				+0.1
1,390,883	-				-0.5
1,390,883	-				-0.4
1,390,883	-				-0.6
1,390,883	-				-1.2
1,390,883	-				-0.9
1,390,956	-				-2.6
1,390,971	+				+0.8
1,390,971	+				-0.8
1,390,984	-				+0.8
1,391,035	+		GFF1368	0.12	+0.4
1,391,054	+		GFF1368	0.14	+1.4
1,391,064	+		GFF1368	0.14	+0.3
1,391,069	+		GFF1368	0.15	-1.6
1,391,069	+		GFF1368	0.15	-0.7
1,391,069	+		GFF1368	0.15	+1.1
1,391,069	+		GFF1368	0.15	-1.0
1,391,069	+		GFF1368	0.15	+0.5
1,391,069	+		GFF1368	0.15	+0.2
1,391,069	+		GFF1368	0.15	-0.0
1,391,069	+		GFF1368	0.15	+0.9
1,391,069	+		GFF1368	0.15	+1.4
1,391,069	+		GFF1368	0.15	-0.7
1,391,069	+		GFF1368	0.15	-1.2
1,391,069	+		GFF1368	0.15	-0.7
1,391,069	+		GFF1368	0.15	-0.0
1,391,069	+		GFF1368	0.15	+0.4
1,391,069	+		GFF1368	0.15	+0.4
1,391,069	+		GFF1368	0.15	-1.5
1,391,072	-		GFF1368	0.15	-0.8
1,391,077	-		GFF1368	0.16	-1.8
1,391,077	-		GFF1368	0.16	-2.5
1,391,077	-		GFF1368	0.16	+0.3
1,391,077	-		GFF1368	0.16	-2.2
1,391,077	-		GFF1368	0.16	-0.2
1,391,077	-		GFF1368	0.16	-2.0
1,391,077	-		GFF1368	0.16	-0.2
1,391,077	-		GFF1368	0.16	-1.9
1,391,077	-		GFF1368	0.16	-0.7
1,391,077	-		GFF1368	0.16	-0.5
1,391,077	-		GFF1368	0.16	-0.9
1,391,078	-		GFF1368	0.16	-1.6
1,391,079	+		GFF1368	0.16	-2.1
1,391,083	-		GFF1368	0.16	+1.6
1,391,086	+		GFF1368	0.16	-0.1
1,391,087	-		GFF1368	0.16	+0.5
1,391,087	-		GFF1368	0.16	-0.4
1,391,094	-		GFF1368	0.17	-0.9
1,391,107	+		GFF1368	0.18	-0.2
1,391,112	+		GFF1368	0.19	-0.1
1,391,115	-		GFF1368	0.19	-1.2
1,391,115	-		GFF1368	0.19	+0.2
1,391,125	-		GFF1368	0.20	+0.9
1,391,143	+		GFF1368	0.21	+0.8
1,391,151	-		GFF1368	0.22	-1.4
1,391,167	+		GFF1368	0.23	-0.5
1,391,186	-		GFF1368	0.25	-0.6
1,391,206	+		GFF1368	0.26	-0.7
1,391,214	-		GFF1368	0.27	-0.9
1,391,242	+		GFF1368	0.30	-0.5
1,391,243	-		GFF1368	0.30	+1.1
1,391,243	-		GFF1368	0.30	+0.8
1,391,250	+		GFF1368	0.30	-0.2
1,391,250	-		GFF1368	0.30	-1.6
1,391,269	+		GFF1368	0.32	-0.6
1,391,269	+		GFF1368	0.32	-0.1
1,391,269	+		GFF1368	0.32	-1.4
1,391,269	+		GFF1368	0.32	+0.1
1,391,269	+		GFF1368	0.32	-0.6
1,391,269	+		GFF1368	0.32	+0.9
1,391,277	-		GFF1368	0.32	+0.2
1,391,277	-		GFF1368	0.32	+0.6
1,391,277	-		GFF1368	0.32	+0.1
1,391,286	+		GFF1368	0.33	-0.9
1,391,294	-		GFF1368	0.34	+0.9
1,391,313	+		GFF1368	0.36	-0.7
1,391,314	+		GFF1368	0.36	+0.2
1,391,321	-		GFF1368	0.36	+0.5
1,391,321	-		GFF1368	0.36	+0.4
1,391,322	-		GFF1368	0.36	+0.8
1,391,322	-		GFF1368	0.36	+0.1
1,391,322	-		GFF1368	0.36	+0.7
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1,391,359	+		GFF1368	0.39	+0.9
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1,391,369	+		GFF1368	0.40	-0.9
1,391,377	-		GFF1368	0.41	-1.2
1,391,384	+		GFF1368	0.42	-0.6
1,391,392	-		GFF1368	0.42	-0.2
1,391,392	-		GFF1368	0.42	+0.1
1,391,429	+		GFF1368	0.45	+0.2
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1,391,456	+		GFF1368	0.48	+0.6
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1,391,475	-		GFF1368	0.49	-0.7
1,391,475	-		GFF1368	0.49	-0.5
1,391,503	+		GFF1368	0.52	-0.6
1,391,505	-		GFF1368	0.52	-0.3
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1,391,517	+		GFF1368	0.53	+0.9
1,391,517	+		GFF1368	0.53	-1.5