Strain Fitness in Sphingobium sp. HT1-2 around GFF1308

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,334,215	-				+0.1
1,334,243	-				+0.8
1,334,243	-				-0.6
1,334,250	+				-0.0
1,334,266	+				+0.5
1,334,274	-				+0.4
1,334,282	+				-1.2
1,334,282	+				+0.8
1,334,282	+				+1.0
1,334,290	-				+0.1
1,334,319	+		GFF1306	0.21	-0.1
1,334,319	+		GFF1306	0.21	-0.5
1,334,319	+		GFF1306	0.21	-1.7
1,334,319	+		GFF1306	0.21	-0.1
1,334,319	+		GFF1306	0.21	-0.4
1,334,327	-		GFF1306	0.25	+1.6
1,334,327	-		GFF1306	0.25	-0.0
1,334,329	+		GFF1306	0.26	+0.3
1,334,343	+		GFF1306	0.33	-0.5
1,334,343	+		GFF1306	0.33	-0.6
1,334,343	+		GFF1306	0.33	+1.2
1,334,351	-		GFF1306	0.37	+1.6
1,334,359	-		GFF1306	0.41	-0.2
1,334,359	-		GFF1306	0.41	-0.3
1,334,359	-		GFF1306	0.41	+0.9
1,334,368	+		GFF1306	0.45	+1.1
1,334,386	-		GFF1306	0.54	-0.5
1,334,387	+		GFF1306	0.55	-0.7
1,334,409	+		GFF1306	0.66	-3.4
1,334,413	-		GFF1306	0.68	+0.7
1,334,458	+				+0.8
1,334,474	-				+0.0
1,334,490	+				-0.1
1,334,490	+				-2.1
1,334,490	+				+1.1
1,334,490	+				+0.7
1,334,490	+				-0.6
1,334,490	+				+0.1
1,334,490	+				+0.0
1,334,490	+				+0.5
1,334,490	+				-2.2
1,334,490	+				+1.2
1,334,490	+				+0.3
1,334,490	+				+0.8
1,334,490	+				+1.2
1,334,490	+				-0.7
1,334,490	+				+0.5
1,334,490	+				-0.1
1,334,490	+				+0.2
1,334,490	+				-0.8
1,334,492	+				-0.2
1,334,495	+				-0.6
1,334,495	+				-0.6
1,334,498	-				-0.4
1,334,498	-				-0.8
1,334,498	-				-0.9
1,334,498	-				-0.9
1,334,498	-				+0.8
1,334,498	-				+0.1
1,334,498	-				+0.3
1,334,498	-				-0.1
1,334,498	-				-0.8
1,334,498	-				-0.7
1,334,498	-				+1.0
1,334,498	-				-1.4
1,334,498	-				-1.0
1,334,498	-				-1.4
1,334,498	-				-0.4
1,334,498	-				-1.2
1,334,498	-				+0.4
1,334,498	-				-0.9
1,334,498	-				-0.4
1,334,498	-				-0.1
1,334,498	-				-0.6
1,334,498	-				+0.1
1,334,498	-				-0.2
1,334,498	-				-0.3
1,334,498	-				+1.6
1,334,506	+				-0.3
1,334,509	-				-1.6
1,334,514	+				+0.0
1,334,514	+				-1.8
1,334,514	+				+0.2
1,334,514	+				+1.3
1,334,519	+				+0.4
1,334,522	-				+0.6
1,334,522	-				+0.7
1,334,526	+				-0.4
1,334,531	+				-1.7
1,334,600	+		GFF1307	0.17	+0.2
1,334,614	-		GFF1307	0.19	-0.9
1,334,634	-		GFF1307	0.22	-1.4
1,334,641	-		GFF1307	0.23	+0.5
1,334,647	-		GFF1307	0.24	-1.0
1,334,671	-		GFF1307	0.28	+0.5
1,334,718	-		GFF1307	0.35	-1.0
1,334,771	-		GFF1307	0.43	-0.7
1,334,771	-		GFF1307	0.43	+0.5
1,334,773	-		GFF1307	0.43	-0.0
1,334,807	+		GFF1307	0.49	-0.2
1,334,808	+		GFF1307	0.49	-0.5
1,334,808	+		GFF1307	0.49	-0.2
1,334,808	+		GFF1307	0.49	-2.0
1,334,809	+		GFF1307	0.49	-1.4
1,334,814	+		GFF1307	0.50	+0.2
1,334,814	+		GFF1307	0.50	-0.3
1,334,815	-		GFF1307	0.50	-1.6
1,334,816	-		GFF1307	0.50	+0.6
1,334,816	-		GFF1307	0.50	+0.9
1,334,816	-		GFF1307	0.50	+0.3
1,334,816	-		GFF1307	0.50	+0.3
1,334,818	+		GFF1307	0.50	+0.4
1,334,822	-		GFF1307	0.51	+0.3
1,334,823	+		GFF1307	0.51	+0.3
1,334,823	+		GFF1307	0.51	+0.5
1,334,826	-		GFF1307	0.52	+0.0
1,334,826	-		GFF1307	0.52	-0.1
1,334,831	-		GFF1307	0.52	-0.5
1,334,836	-		GFF1307	0.53	+1.3
1,334,845	-		GFF1307	0.55	-0.1
1,334,847	-		GFF1307	0.55	-0.1
1,334,847	-		GFF1307	0.55	+0.1
1,334,870	+		GFF1307	0.58	-2.4
1,334,870	+		GFF1307	0.58	-1.3
1,334,878	-		GFF1307	0.60	+1.1
1,334,905	+		GFF1307	0.64	-0.6
1,334,913	-		GFF1307	0.65	+0.6
1,334,971	+		GFF1307	0.74	-0.4
1,334,985	+		GFF1307	0.76	+0.9
1,334,988	-		GFF1307	0.77	+0.3
1,334,993	-		GFF1307	0.78	+1.7
1,335,004	+		GFF1307	0.79	-0.4
1,335,019	-		GFF1307	0.82	-0.6
1,335,029	-		GFF1307	0.83	-0.9
1,335,034	-		GFF1307	0.84	+0.5
1,335,058	-		GFF1307	0.88	-0.4
1,335,058	-		GFF1307	0.88	+0.6
1,335,091	+				+0.1
1,335,099	+				-1.3
1,335,099	+				-0.3
1,335,099	+				-1.9
1,335,107	-				-0.8
1,335,107	-				-0.3
1,335,113	+				-1.5
1,335,113	+				-0.9
1,335,118	+				-0.2
1,335,126	-				-1.6
1,335,126	-				-3.0
1,335,126	-				-2.4
1,335,126	-				+0.1
1,335,126	-				+1.9
1,335,138	+				-0.7
1,335,138	+				-0.3
1,335,138	+				-0.6
1,335,138	+				-1.2
1,335,144	-				-0.5
1,335,151	-				-0.3
1,335,151	-				-1.3
1,335,151	-				+0.2
1,335,163	-				-0.4
1,335,179	+				-2.4
1,335,179	+				-1.2
1,335,187	-				-2.2
1,335,187	-				-1.5
1,335,190	+				+0.2
1,335,212	+				-1.4
1,335,226	+				-0.2
1,335,227	-				-0.2
1,335,239	-				+0.1
1,335,242	-		GFF1308	0.11	-0.6
1,335,242	-		GFF1308	0.11	+0.5
1,335,242	-		GFF1308	0.11	-0.6
1,335,242	-		GFF1308	0.11	-0.2
1,335,266	+		GFF1308	0.21	-2.2
1,335,293	-		GFF1308	0.32	-2.1
1,335,293	-		GFF1308	0.32	-2.5
1,335,330	-		GFF1308	0.47	+0.6
1,335,344	+		GFF1308	0.53	-0.9
1,335,352	-		GFF1308	0.56	-0.9
1,335,354	-		GFF1308	0.57	-2.1
1,335,388	-		GFF1308	0.71	+0.7
1,335,400	-		GFF1308	0.76	-2.5
1,335,422	+		GFF1308	0.85	-1.1
1,335,427	+		GFF1308	0.87	+0.2
1,335,432	+		GFF1308	0.89	-0.8
1,335,438	+				+0.0
1,335,440	-				-0.1
1,335,457	+				-1.7
1,335,460	-				-0.6
1,335,502	-		GFF1309	0.30	-1.1
1,335,502	-		GFF1309	0.30	+0.3
1,335,503	+		GFF1309	0.31	+0.4
1,335,508	+		GFF1309	0.34	-0.6
1,335,508	+		GFF1309	0.34	+1.9
1,335,508	+		GFF1309	0.34	-1.4
1,335,508	+		GFF1309	0.34	-0.5
1,335,510	+		GFF1309	0.35	+2.3
1,335,511	-		GFF1309	0.36	+0.1
1,335,516	-		GFF1309	0.39	+0.2
1,335,516	-		GFF1309	0.39	-1.6
1,335,518	-		GFF1309	0.40	+0.1
1,335,518	-		GFF1309	0.40	-1.6
1,335,518	-		GFF1309	0.40	-1.2
1,335,518	-		GFF1309	0.40	+0.6
1,335,519	-		GFF1309	0.41	-0.4
1,335,540	+		GFF1309	0.54	-0.0
1,335,578	+		GFF1309	0.78	+0.8
1,335,643	+				-1.4
1,335,643	+				+0.8
1,335,666	-				+0.6
1,335,666	-				+0.9
1,335,666	-				+0.9
1,335,669	+				-1.6
1,335,676	-				+0.4
1,335,687	-				+0.1
1,335,690	+				-0.5
1,335,696	-				+0.2
1,335,698	-				-1.0
1,335,698	-				+0.3
1,335,700	+				-1.0
1,335,700	+				-0.2
1,335,703	-				-0.6
1,335,705	+				-0.5
1,335,713	-				+0.1
1,335,715	+				-1.5
1,335,715	-				+0.6
1,335,765	-				+0.2
1,335,789	+				-0.5
1,335,792	-				-0.1
1,335,795	+				-0.8
1,335,797	-				-0.2
1,335,797	-				+0.1
1,335,797	-				-1.4
1,335,798	-				+1.5
1,335,800	+				-0.9
1,335,800	+				-0.2
1,335,800	+				-1.0
1,335,800	+				-0.1
1,335,800	+				-1.7
1,335,800	+				+0.6
1,335,800	+				+0.6
1,335,800	+				+0.6
1,335,800	+				-0.0
1,335,800	+				-1.7
1,335,800	+				-1.4
1,335,800	+				+0.4
1,335,800	+				-0.6
1,335,800	+				+0.2
1,335,800	+				+1.1
1,335,800	+				-0.2
1,335,800	+				+0.5
1,335,800	+				+0.3
1,335,802	-				-0.6
1,335,804	+				-2.6
1,335,808	-				-0.8
1,335,808	-				-2.7
1,335,808	-				-0.9
1,335,808	-				-1.1
1,335,808	-				-1.4
1,335,808	-				+0.4
1,335,808	-				+0.3
1,335,808	-				+0.1
1,335,808	-				-1.1
1,335,823	+				-1.0
1,335,847	-				-0.2
1,335,867	+				+0.8
1,335,873	+				-0.3
1,335,881	-				+0.8
1,335,881	-				+0.7
1,335,881	-				-1.5
1,335,925	+				-0.8
1,335,925	+				-1.1
1,335,925	+				+0.4
1,335,925	+				-1.1
1,335,925	+				+0.5
1,335,925	+				-0.1
1,335,925	+				-0.9
1,335,927	+				+0.2
1,335,927	+				-0.4
1,335,933	-				+0.8
1,335,933	-				-1.7
1,335,933	-				+0.1
1,335,935	+				-0.8
1,335,943	-				+0.2
1,335,979	+				+0.8
1,335,984	-				-0.4
1,335,986	+				+0.4
1,335,986	+				+0.5
1,335,986	+				+0.9
1,335,989	-				+0.1
1,335,989	-				-0.2
1,335,994	-				-0.1
1,335,994	-				+1.4
1,335,994	-				-0.4
1,335,994	-				-2.1
1,335,996	+				+0.7
1,335,996	+				+0.6
1,335,996	+				-1.6
1,335,996	+				-0.0
1,335,996	+				+0.2
1,335,996	+				+0.0
1,336,004	-				-0.0
1,336,004	-				-0.0
1,336,004	-				+0.8
1,336,012	-				+1.6
1,336,036	-		GFF1310	0.10	+1.5
1,336,045	+		GFF1310	0.10	-1.2
1,336,048	-		GFF1310	0.11	-0.2
1,336,067	-		GFF1310	0.11	+0.8
1,336,070	-		GFF1310	0.11	+0.8
1,336,089	-		GFF1310	0.12	+0.5
1,336,091	+		GFF1310	0.12	-0.6
1,336,094	+		GFF1310	0.12	+0.6
1,336,103	+		GFF1310	0.12	-1.3
1,336,105	+		GFF1310	0.12	-0.6
1,336,105	+		GFF1310	0.12	-0.4
1,336,113	-		GFF1310	0.12	+0.3
1,336,113	-		GFF1310	0.12	-0.4
1,336,115	+		GFF1310	0.12	+0.5
1,336,115	+		GFF1310	0.12	+0.8
1,336,117	-		GFF1310	0.12	-1.1
1,336,117	-		GFF1310	0.12	-0.8
1,336,123	-		GFF1310	0.13	+0.6
1,336,123	-		GFF1310	0.13	-1.4
1,336,123	-		GFF1310	0.13	+0.1
1,336,123	-		GFF1310	0.13	+0.8
1,336,123	-		GFF1310	0.13	-0.7
1,336,131	+		GFF1310	0.13	-0.9
1,336,136	+		GFF1310	0.13	+0.3
1,336,136	+		GFF1310	0.13	-1.4
1,336,144	-		GFF1310	0.13	+1.0
1,336,174	+		GFF1310	0.14	+1.5
1,336,174	+		GFF1310	0.14	+0.3
1,336,174	+		GFF1310	0.14	-0.5
1,336,174	+		GFF1310	0.14	-0.2
1,336,174	+		GFF1310	0.14	-0.6
1,336,174	+		GFF1310	0.14	-1.0
1,336,174	+		GFF1310	0.14	+1.3
1,336,182	-		GFF1310	0.14	-1.9
1,336,182	-		GFF1310	0.14	+0.7
1,336,182	-		GFF1310	0.14	-1.4
1,336,182	-		GFF1310	0.14	-0.8
1,336,182	-		GFF1310	0.14	+0.2
1,336,182	-		GFF1310	0.14	+1.0
1,336,182	-		GFF1310	0.14	+1.0
1,336,182	-		GFF1310	0.14	-0.4
1,336,182	-		GFF1310	0.14	-1.2
1,336,182	-		GFF1310	0.14	-0.4
1,336,182	-		GFF1310	0.14	+1.1
1,336,182	-		GFF1310	0.14	-0.8
1,336,182	-		GFF1310	0.14	+0.8
1,336,189	+		GFF1310	0.14	+0.4
1,336,196	-		GFF1310	0.14	-1.0
1,336,215	+		GFF1310	0.15	-0.1
1,336,231	-		GFF1310	0.15	+0.9
1,336,247	+		GFF1310	0.16	-1.4
1,336,255	-		GFF1310	0.16	-2.0
1,336,281	+		GFF1310	0.17	-0.5
1,336,289	-		GFF1310	0.17	+0.1
1,336,289	-		GFF1310	0.17	-0.6
1,336,291	+		GFF1310	0.17	+0.0
1,336,299	-		GFF1310	0.17	+0.6
1,336,308	+		GFF1310	0.17	-0.1
1,336,308	+		GFF1310	0.17	+0.1
1,336,308	+		GFF1310	0.17	+1.1
1,336,308	+		GFF1310	0.17	-0.8
1,336,316	-		GFF1310	0.18	-0.8
1,336,316	-		GFF1310	0.18	+0.2
1,336,316	-		GFF1310	0.18	+1.1
1,336,316	-		GFF1310	0.18	-0.9
1,336,316	-		GFF1310	0.18	+0.4
1,336,326	-		GFF1310	0.18	-0.9
1,336,331	+		GFF1310	0.18	+0.4
1,336,342	+		GFF1310	0.18	-2.8
1,336,350	-		GFF1310	0.18	-1.2
1,336,370	+		GFF1310	0.19	+0.4
1,336,370	+		GFF1310	0.19	-2.8
1,336,370	+		GFF1310	0.19	+0.0
1,336,370	+		GFF1310	0.19	-1.7
1,336,370	+		GFF1310	0.19	-2.0
1,336,370	+		GFF1310	0.19	-1.9
1,336,378	-		GFF1310	0.19	+0.8
1,336,378	-		GFF1310	0.19	+0.2
1,336,380	+		GFF1310	0.19	+0.1
1,336,383	+		GFF1310	0.19	-0.4
1,336,383	-		GFF1310	0.19	-0.8
1,336,383	-		GFF1310	0.19	-0.2
1,336,432	+		GFF1310	0.21	+0.3
1,336,440	-		GFF1310	0.21	-0.2
1,336,453	+		GFF1310	0.21	-2.5