Strain Fitness in Sphingobium sp. HT1-2 around GFF1302

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,330,291	+		GFF1301	0.54	+1.8
1,330,304	+		GFF1301	0.54	-0.1
1,330,304	+		GFF1301	0.54	-0.6
1,330,304	+		GFF1301	0.54	+1.0
1,330,333	-		GFF1301	0.56	-1.0
1,330,334	+		GFF1301	0.56	-0.6
1,330,334	+		GFF1301	0.56	+0.5
1,330,334	+		GFF1301	0.56	+0.1
1,330,334	+		GFF1301	0.56	-0.4
1,330,334	+		GFF1301	0.56	-2.0
1,330,335	+		GFF1301	0.56	-0.2
1,330,336	-		GFF1301	0.56	+2.0
1,330,336	-		GFF1301	0.56	-0.9
1,330,340	+		GFF1301	0.56	+0.5
1,330,361	+		GFF1301	0.57	-0.1
1,330,366	+		GFF1301	0.58	-1.2
1,330,366	+		GFF1301	0.58	+0.2
1,330,371	+		GFF1301	0.58	-0.6
1,330,374	-		GFF1301	0.58	-1.5
1,330,374	-		GFF1301	0.58	+0.1
1,330,378	+		GFF1301	0.58	+0.2
1,330,409	+		GFF1301	0.60	+0.6
1,330,417	-		GFF1301	0.60	+1.4
1,330,435	-		GFF1301	0.61	+0.8
1,330,435	-		GFF1301	0.61	+1.1
1,330,445	+		GFF1301	0.62	-1.6
1,330,445	+		GFF1301	0.62	+0.4
1,330,468	+		GFF1301	0.63	-1.6
1,330,475	+		GFF1301	0.63	+1.0
1,330,475	+		GFF1301	0.63	+0.0
1,330,484	-		GFF1301	0.64	+1.1
1,330,492	+		GFF1301	0.64	-1.8
1,330,511	-		GFF1301	0.65	-1.4
1,330,543	+		GFF1301	0.67	+0.3
1,330,577	+		GFF1301	0.69	-0.9
1,330,579	-		GFF1301	0.69	+0.0
1,330,588	-		GFF1301	0.69	-1.7
1,330,604	+		GFF1301	0.70	+0.3
1,330,638	+		GFF1301	0.72	+0.4
1,330,642	+		GFF1301	0.72	+0.0
1,330,673	+		GFF1301	0.74	-3.0
1,330,673	+		GFF1301	0.74	+0.6
1,330,673	+		GFF1301	0.74	-0.9
1,330,681	-		GFF1301	0.74	+0.3
1,330,681	-		GFF1301	0.74	+1.0
1,330,712	+		GFF1301	0.76	+0.0
1,330,720	-		GFF1301	0.76	-0.0
1,330,727	+		GFF1301	0.77	+1.0
1,330,727	+		GFF1301	0.77	-2.5
1,330,735	+		GFF1301	0.77	-0.5
1,330,735	-		GFF1301	0.77	+0.4
1,330,740	+		GFF1301	0.77	+0.1
1,330,745	+		GFF1301	0.78	-2.0
1,330,745	+		GFF1301	0.78	-1.0
1,330,753	-		GFF1301	0.78	-0.1
1,330,753	-		GFF1301	0.78	-1.1
1,330,754	-		GFF1301	0.78	+0.8
1,330,758	+		GFF1301	0.78	+1.0
1,330,758	+		GFF1301	0.78	+1.3
1,330,761	-		GFF1301	0.79	-1.4
1,330,771	-		GFF1301	0.79	+0.4
1,330,778	+		GFF1301	0.79	+0.0
1,330,778	-		GFF1301	0.79	-0.7
1,330,786	+		GFF1301	0.80	-1.3
1,330,804	+		GFF1301	0.81	-1.0
1,330,813	+		GFF1301	0.81	+0.1
1,330,821	+		GFF1301	0.82	+1.1
1,330,823	+		GFF1301	0.82	-0.0
1,330,823	+		GFF1301	0.82	+0.3
1,330,876	+		GFF1301	0.85	+0.8
1,330,877	+		GFF1301	0.85	+0.2
1,330,877	+		GFF1301	0.85	+0.1
1,330,879	-		GFF1301	0.85	+0.5
1,330,879	-		GFF1301	0.85	-0.8
1,330,879	-		GFF1301	0.85	-0.5
1,330,883	+		GFF1301	0.85	-0.2
1,330,885	-		GFF1301	0.85	-0.9
1,330,885	-		GFF1301	0.85	-0.7
1,330,885	-		GFF1301	0.85	-0.2
1,330,885	-		GFF1301	0.85	-0.9
1,330,885	-		GFF1301	0.85	-0.0
1,330,885	-		GFF1301	0.85	-0.6
1,330,885	-		GFF1301	0.85	-0.4
1,330,885	-		GFF1301	0.85	-0.5
1,330,886	+		GFF1301	0.85	+0.8
1,330,886	+		GFF1301	0.85	-0.5
1,330,894	-		GFF1301	0.86	-0.4
1,330,931	+		GFF1301	0.88	+0.3
1,330,998	-				-1.7
1,331,006	+				+0.4
1,331,006	+				-0.3
1,331,006	+				+0.8
1,331,006	+				-0.8
1,331,006	+				-0.7
1,331,014	-				+0.6
1,331,016	+				+1.6
1,331,019	-				+1.5
1,331,026	+				+0.1
1,331,034	-				-1.4
1,331,043	+				+0.5
1,331,043	+				-1.2
1,331,043	+				+0.6
1,331,043	+				-0.4
1,331,043	+				+0.7
1,331,045	+				+1.1
1,331,045	+				-0.7
1,331,051	-				-0.5
1,331,053	+				+0.4
1,331,053	-				-1.7
1,331,053	-				-1.7
1,331,064	+				-0.3
1,331,066	-				+0.3
1,331,074	+				-0.1
1,331,074	+				+0.1
1,331,082	-				+1.1
1,331,082	-				-0.1
1,331,082	-				+0.3
1,331,082	-				-1.5
1,331,099	+				+0.0
1,331,105	-				-0.0
1,331,107	-				+0.1
1,331,133	+				-0.0
1,331,141	-				-0.5
1,331,141	-				+0.6
1,331,152	-				+0.4
1,331,152	-				-0.6
1,331,152	-				+0.8
1,331,154	+				+0.6
1,331,162	-				-0.3
1,331,162	-				-0.6
1,331,179	+				+0.2
1,331,256	+				-0.5
1,331,261	+				-0.8
1,331,261	+				-0.6
1,331,261	+				+0.0
1,331,267	+				+0.2
1,331,269	-				+0.2
1,331,296	+				+1.5
1,331,319	+				-2.1
1,331,319	+				+0.7
1,331,327	-				+1.2
1,331,327	-				+0.4
1,331,361	+		GFF1302	0.18	-0.7
1,331,361	+		GFF1302	0.18	+1.4
1,331,369	-		GFF1302	0.20	-2.5
1,331,369	-		GFF1302	0.20	-1.7
1,331,369	-		GFF1302	0.20	+1.2
1,331,378	+		GFF1302	0.23	-1.6
1,331,383	+		GFF1302	0.24	-0.6
1,331,383	+		GFF1302	0.24	-0.0
1,331,386	-		GFF1302	0.25	-0.3
1,331,391	-		GFF1302	0.26	+0.2
1,331,391	-		GFF1302	0.26	-1.3
1,331,391	-		GFF1302	0.26	+0.2
1,331,391	-		GFF1302	0.26	-0.4
1,331,391	-		GFF1302	0.26	+0.5
1,331,391	-		GFF1302	0.26	-0.2
1,331,391	-		GFF1302	0.26	-0.5
1,331,405	+		GFF1302	0.29	-2.1
1,331,427	+		GFF1302	0.35	-0.6
1,331,459	-		GFF1302	0.43	-1.4
1,331,464	-		GFF1302	0.44	-1.7
1,331,464	-		GFF1302	0.44	+0.3
1,331,464	-		GFF1302	0.44	+1.1
1,331,464	-		GFF1302	0.44	-0.5
1,331,464	-		GFF1302	0.44	-0.3
1,331,464	-		GFF1302	0.44	-0.6
1,331,464	-		GFF1302	0.44	-0.6
1,331,464	-		GFF1302	0.44	+1.7
1,331,464	-		GFF1302	0.44	-0.0
1,331,464	-		GFF1302	0.44	+0.3
1,331,464	-		GFF1302	0.44	+0.0
1,331,464	-		GFF1302	0.44	-1.9
1,331,464	-		GFF1302	0.44	-1.8
1,331,469	-		GFF1302	0.45	+0.7
1,331,471	+		GFF1302	0.46	-0.1
1,331,480	+		GFF1302	0.48	+0.8
1,331,482	+		GFF1302	0.49	+0.2
1,331,487	+		GFF1302	0.50	+1.1
1,331,510	+		GFF1302	0.56	-0.1
1,331,510	+		GFF1302	0.56	+0.5
1,331,510	+		GFF1302	0.56	+0.1
1,331,510	+		GFF1302	0.56	+0.3
1,331,510	+		GFF1302	0.56	+0.2
1,331,510	+		GFF1302	0.56	+0.7
1,331,510	+		GFF1302	0.56	+0.8
1,331,510	+		GFF1302	0.56	+0.1
1,331,510	+		GFF1302	0.56	-0.5
1,331,512	+		GFF1302	0.56	-0.4
1,331,512	+		GFF1302	0.56	-1.5
1,331,512	+		GFF1302	0.56	+1.1
1,331,515	+		GFF1302	0.57	-2.3
1,331,518	-		GFF1302	0.58	+0.2
1,331,518	-		GFF1302	0.58	-1.8
1,331,518	-		GFF1302	0.58	+0.2
1,331,518	-		GFF1302	0.58	-1.9
1,331,518	-		GFF1302	0.58	-0.8
1,331,518	-		GFF1302	0.58	+0.3
1,331,520	-		GFF1302	0.58	-0.3
1,331,520	-		GFF1302	0.58	+0.7
1,331,522	+		GFF1302	0.59	+1.2
1,331,528	+		GFF1302	0.60	-1.2
1,331,540	-		GFF1302	0.63	+1.4
1,331,542	-		GFF1302	0.64	-0.1
1,331,542	-		GFF1302	0.64	-2.5
1,331,542	-		GFF1302	0.64	-1.5
1,331,544	+		GFF1302	0.64	+0.8
1,331,544	+		GFF1302	0.64	-0.5
1,331,544	+		GFF1302	0.64	+1.4
1,331,544	-		GFF1302	0.64	+0.1
1,331,552	-		GFF1302	0.66	-1.8
1,331,552	-		GFF1302	0.66	+1.4
1,331,552	-		GFF1302	0.66	+1.1
1,331,552	-		GFF1302	0.66	-1.4
1,331,552	-		GFF1302	0.66	+0.2
1,331,552	-		GFF1302	0.66	+0.3
1,331,552	-		GFF1302	0.66	-0.5
1,331,552	-		GFF1302	0.66	+0.4
1,331,552	-		GFF1302	0.66	+0.6
1,331,557	-		GFF1302	0.67	-0.5
1,331,557	-		GFF1302	0.67	-1.4
1,331,557	-		GFF1302	0.67	-0.0
1,331,567	+		GFF1302	0.70	+1.1
1,331,570	+		GFF1302	0.71	-2.9
1,331,614	+		GFF1302	0.82	+2.3
1,331,618	+		GFF1302	0.83	-2.4
1,331,621	-		GFF1302	0.83	+1.3
1,331,631	-		GFF1302	0.86	+0.3
1,331,674	-				-2.2
1,331,680	+				-0.6
1,331,702	+				-0.3
1,331,716	+				-0.8
1,331,734	+				+1.5
1,331,734	+				+0.4
1,331,734	+				+0.1
1,331,742	-				-1.4
1,331,748	-				+0.4
1,331,757	+				+2.5
1,331,757	+				+0.1
1,331,757	+				+0.3
1,331,765	-				+0.1
1,331,765	-				-1.6
1,331,827	+				+1.5
1,331,840	+				+0.2
1,331,840	+				-0.0
1,331,840	+				+0.3
1,331,840	+				-0.2
1,331,840	+				+0.1
1,331,840	+				-0.2
1,331,840	+				+1.0
1,331,840	+				-0.9
1,331,840	+				-1.3
1,331,840	+				-1.2
1,331,840	+				-1.6
1,331,840	+				+0.4
1,331,840	+				-1.2
1,331,840	+				-0.1
1,331,840	+				-0.6
1,331,840	+				-0.9
1,331,840	+				-1.5
1,331,840	+				-1.8
1,331,840	+				-0.0
1,331,840	+				+1.3
1,331,840	+				+0.5
1,331,840	+				-1.5
1,331,840	+				-1.4
1,331,840	+				-0.4
1,331,840	+				+0.2
1,331,840	+				-1.5
1,331,840	+				-1.5
1,331,840	+				+0.2
1,331,840	+				+0.0
1,331,840	+				-0.5
1,331,840	+				+0.2
1,331,843	-				-2.2
1,331,845	+				-0.4
1,331,845	+				+1.4
1,331,848	-				-1.5
1,331,848	-				-0.0
1,331,848	-				-0.0
1,331,848	-				-0.2
1,331,848	-				-1.9
1,331,848	-				-1.0
1,331,848	-				-0.6
1,331,848	-				-0.8
1,331,848	-				+0.6
1,331,848	-				-0.2
1,331,848	-				-1.2
1,331,848	-				+0.5
1,331,848	-				+0.2
1,331,848	-				-0.7
1,331,848	-				+0.0
1,331,848	-				-1.0
1,331,848	-				-0.9
1,331,848	-				+1.3
1,331,853	-				+0.9
1,331,864	+				+1.7
1,331,872	-				-0.0
1,331,914	-				-0.6
1,331,924	+				-0.3
1,331,924	+				+0.5
1,331,929	+				-2.1
1,331,932	-				-1.8
1,331,932	-				+0.1
1,331,932	-				-0.4
1,331,937	-				-0.9
1,331,937	-				-0.0
1,331,972	+				-2.4
1,331,972	+				-1.0
1,331,991	-				+0.1
1,332,017	+				-0.9
1,332,030	-				-0.3
1,332,072	+				-0.3
1,332,080	-				-1.4
1,332,080	-				-2.9
1,332,080	-				-0.0
1,332,088	-				-0.3
1,332,088	-				-0.8
1,332,090	-				+0.2
1,332,090	-				+0.1
1,332,090	-				+0.8
1,332,090	-				-0.7
1,332,094	+				+0.2
1,332,098	-				+0.5
1,332,107	-				+0.8
1,332,113	+				-0.7
1,332,113	+				-0.1
1,332,113	+				-0.4
1,332,117	-				-0.7
1,332,128	+				+1.9
1,332,167	+		GFF1303	0.12	+0.4
1,332,170	+		GFF1303	0.12	-1.9
1,332,173	+		GFF1303	0.13	-1.2
1,332,173	-		GFF1303	0.13	-0.4
1,332,173	-		GFF1303	0.13	-0.9
1,332,181	-		GFF1303	0.14	-2.1
1,332,183	+		GFF1303	0.14	-1.0
1,332,186	-		GFF1303	0.15	+1.2
1,332,246	-		GFF1303	0.25	+1.4
1,332,246	-		GFF1303	0.25	-2.0
1,332,249	+		GFF1303	0.25	-0.7
1,332,249	+		GFF1303	0.25	-0.1
1,332,255	-		GFF1303	0.26	+0.4
1,332,262	+		GFF1303	0.28	+0.5
1,332,276	+		GFF1303	0.30	+0.4
1,332,350	-		GFF1303	0.42	+0.8
1,332,354	+		GFF1303	0.43	+0.4
1,332,393	-		GFF1303	0.49	+0.0
1,332,397	+		GFF1303	0.50	+0.6
1,332,397	+		GFF1303	0.50	-0.2
1,332,468	+		GFF1303	0.62	-0.7
1,332,468	+		GFF1303	0.62	-0.8
1,332,468	+		GFF1303	0.62	-0.1
1,332,468	+		GFF1303	0.62	+0.9
1,332,468	+		GFF1303	0.62	+0.9
1,332,468	+		GFF1303	0.62	-1.0
1,332,468	+		GFF1303	0.62	+1.2
1,332,468	+		GFF1303	0.62	+1.7
1,332,468	+		GFF1303	0.62	-0.1
1,332,476	-		GFF1303	0.63	-0.1
1,332,476	-		GFF1303	0.63	+0.1
1,332,480	+		GFF1303	0.64	-0.1
1,332,486	-		GFF1303	0.65	-0.5
1,332,488	+		GFF1303	0.65	-0.6
1,332,490	+		GFF1303	0.66	+0.1
1,332,547	+		GFF1303	0.75	+0.0
1,332,584	+		GFF1303	0.81	+1.1
1,332,643	-				-0.4