Strain Fitness in Sphingobium sp. HT1-2 around GFF13

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
8,041	+		GFF12	0.20	-2.3
8,060	-		GFF12	0.21	+0.2
8,070	-		GFF12	0.22	+0.2
8,074	-		GFF12	0.22	-0.0
8,076	+		GFF12	0.23	-0.4
8,097	-		GFF12	0.24	-1.2
8,122	+		GFF12	0.26	-2.2
8,122	+		GFF12	0.26	-0.2
8,151	-		GFF12	0.29	-1.6
8,153	+		GFF12	0.29	+0.1
8,161	-		GFF12	0.30	-0.6
8,162	-		GFF12	0.30	+0.3
8,203	+		GFF12	0.33	+0.8
8,227	-		GFF12	0.35	-0.4
8,291	-		GFF12	0.40	+0.4
8,291	-		GFF12	0.40	+0.3
8,298	-		GFF12	0.41	-2.4
8,320	-		GFF12	0.42	+0.3
8,321	+		GFF12	0.42	-0.2
8,321	+		GFF12	0.42	-0.3
8,322	+		GFF12	0.43	-0.2
8,329	-		GFF12	0.43	-0.0
8,329	-		GFF12	0.43	+0.5
8,347	-		GFF12	0.45	+0.5
8,356	+		GFF12	0.45	-0.9
8,356	+		GFF12	0.45	+1.6
8,356	+		GFF12	0.45	-1.8
8,356	+		GFF12	0.45	-2.7
8,356	+		GFF12	0.45	-1.2
8,356	+		GFF12	0.45	+0.1
8,356	+		GFF12	0.45	-0.9
8,364	-		GFF12	0.46	-1.8
8,364	-		GFF12	0.46	+0.6
8,364	-		GFF12	0.46	-0.5
8,364	-		GFF12	0.46	+0.2
8,372	-		GFF12	0.47	+1.3
8,425	-		GFF12	0.51	-2.5
8,444	+		GFF12	0.52	+0.5
8,444	+		GFF12	0.52	+0.8
8,457	-		GFF12	0.53	+0.0
8,471	+		GFF12	0.55	+0.3
8,490	-		GFF12	0.56	-0.7
8,490	-		GFF12	0.56	-1.1
8,507	-		GFF12	0.58	-0.1
8,517	+		GFF12	0.58	+0.5
8,520	-		GFF12	0.59	-1.2
8,536	+		GFF12	0.60	-1.4
8,544	-		GFF12	0.61	-1.4
8,544	-		GFF12	0.61	+0.3
8,555	-		GFF12	0.61	-0.4
8,566	+		GFF12	0.62	-0.4
8,566	+		GFF12	0.62	-0.1
8,573	+		GFF12	0.63	+1.0
8,574	-		GFF12	0.63	+1.1
8,574	-		GFF12	0.63	-2.2
8,583	+		GFF12	0.64	-1.0
8,589	-		GFF12	0.64	-1.6
8,589	-		GFF12	0.64	+0.5
8,615	-		GFF12	0.66	-1.6
8,671	+		GFF12	0.71	+0.6
8,673	-		GFF12	0.71	+0.3
8,690	+		GFF12	0.72	+0.7
8,695	+		GFF12	0.73	+0.7
8,695	+		GFF12	0.73	+0.4
8,697	+		GFF12	0.73	-2.1
8,697	+		GFF12	0.73	+0.4
8,698	-		GFF12	0.73	-0.7
8,698	-		GFF12	0.73	-0.5
8,703	-		GFF12	0.73	-2.2
8,706	+		GFF12	0.74	+0.2
8,706	+		GFF12	0.74	+0.7
8,714	-		GFF12	0.74	-1.5
8,716	+		GFF12	0.74	-0.5
8,719	-		GFF12	0.75	-0.7
8,737	+		GFF12	0.76	+0.3
8,737	+		GFF12	0.76	+0.9
8,737	+		GFF12	0.76	+0.1
8,745	-		GFF12	0.77	-0.4
8,745	-		GFF12	0.77	-0.6
8,745	-		GFF12	0.77	+0.1
8,745	-		GFF12	0.77	-0.2
8,745	-		GFF12	0.77	+0.8
8,773	+		GFF12	0.79	+0.1
8,781	-		GFF12	0.80	+0.7
8,796	+		GFF12	0.81	-0.0
8,821	-		GFF12	0.83	+0.1
8,823	-		GFF12	0.83	+0.7
8,823	-		GFF12	0.83	-2.4
8,829	+		GFF12	0.84	-1.7
8,829	-		GFF12	0.84	-1.5
8,837	-		GFF12	0.84	-1.1
8,939	+				+0.4
8,947	-				-0.6
8,947	-				-1.1
8,948	-				+0.3
8,948	-				+1.2
8,949	+				+0.5
8,967	+				-1.2
8,967	-				-0.8
8,971	+				+1.0
8,971	+				+0.2
8,973	+				+1.0
8,973	+				+0.5
8,979	+				-0.4
8,979	-				-0.0
8,981	-				-1.2
8,981	-				+1.2
8,981	-				+0.1
8,981	-				-0.4
8,981	-				-1.2
8,985	+				-0.1
9,000	+				+0.6
9,000	+				+0.8
9,003	-				-0.5
9,005	+				-1.8
9,008	-				+0.1
9,008	-				-0.4
9,013	-				-1.2
9,013	-				-0.7
9,013	-				-1.0
9,013	-				-0.3
9,017	-				+0.1
9,018	-				+0.3
9,019	-				-1.5
9,026	+				-2.4
9,051	+				-0.4
9,053	+				-1.7
9,053	+				-1.9
9,053	+				-1.7
9,053	+				-1.0
9,053	+				+0.1
9,059	-				+0.6
9,059	-				-0.6
9,059	-				-2.1
9,059	-				+0.4
9,061	-				+2.2
9,061	-				-1.4
9,061	-				+0.3
9,061	-				+0.1
9,061	-				-1.9
9,061	-				-1.5
9,083	-				-0.8
9,167	+		GFF13	0.16	-0.4
9,198	+		GFF13	0.20	-1.4
9,198	+		GFF13	0.20	+0.4
9,206	-		GFF13	0.20	-0.7
9,206	-		GFF13	0.20	-0.3
9,216	-		GFF13	0.22	+0.3
9,219	-		GFF13	0.22	-0.9
9,219	-		GFF13	0.22	-0.1
9,220	+		GFF13	0.22	-2.4
9,229	-		GFF13	0.23	-0.2
9,257	-		GFF13	0.27	-0.3
9,298	-		GFF13	0.32	+0.1
9,310	+		GFF13	0.33	+0.8
9,318	+		GFF13	0.34	+1.6
9,319	+		GFF13	0.34	-1.7
9,326	-		GFF13	0.35	-1.2
9,343	+		GFF13	0.37	-2.7
9,343	+		GFF13	0.37	-0.7
9,351	-		GFF13	0.38	-0.8
9,368	+		GFF13	0.40	+0.3
9,376	-		GFF13	0.41	-1.4
9,404	+		GFF13	0.45	-1.1
9,426	+		GFF13	0.48	-0.4
9,426	+		GFF13	0.48	-0.9
9,426	+		GFF13	0.48	-1.8
9,426	+		GFF13	0.48	-2.2
9,426	+		GFF13	0.48	-1.6
9,426	+		GFF13	0.48	+1.1
9,434	-		GFF13	0.49	+0.1
9,434	-		GFF13	0.49	+0.2
9,434	-		GFF13	0.49	-0.3
9,434	-		GFF13	0.49	-1.0
9,434	-		GFF13	0.49	+0.5
9,434	-		GFF13	0.49	-0.4
9,461	-		GFF13	0.52	+0.2
9,483	-		GFF13	0.55	+0.5
9,496	+		GFF13	0.56	-0.9
9,496	+		GFF13	0.56	+0.5
9,496	+		GFF13	0.56	-1.7
9,504	-		GFF13	0.57	+0.5
9,504	-		GFF13	0.57	-0.4
9,504	-		GFF13	0.57	-0.4
9,504	-		GFF13	0.57	+0.9
9,504	-		GFF13	0.57	+1.5
9,504	-		GFF13	0.57	-2.0
9,504	-		GFF13	0.57	-1.3
9,528	+		GFF13	0.60	+0.2
9,536	-		GFF13	0.61	-1.5
9,596	-		GFF13	0.69	+0.4
9,617	-		GFF13	0.71	+1.0
9,743	-		GFF13	0.87	-1.6
9,797	-				-0.4
9,813	-				-1.4
9,814	-				-3.0
9,814	-				+0.8
9,814	-				-0.5
9,870	-				+0.2
9,912	-				-0.0
9,958	-		GFF14	0.11	+0.0
9,958	-		GFF14	0.11	+1.8
9,986	+		GFF14	0.14	-1.5
9,996	-		GFF14	0.15	-1.8
10,013	-		GFF14	0.16	-0.8
10,029	-		GFF14	0.18	-0.4
10,039	-		GFF14	0.19	+1.4
10,049	+		GFF14	0.19	-0.7
10,067	-		GFF14	0.21	-1.2
10,076	-		GFF14	0.22	+1.1
10,076	-		GFF14	0.22	-0.4
10,098	-		GFF14	0.24	-1.9
10,120	+		GFF14	0.26	-2.3
10,120	+		GFF14	0.26	-0.2
10,128	+		GFF14	0.27	-1.7
10,128	+		GFF14	0.27	+0.3
10,136	-		GFF14	0.28	-0.6
10,146	+		GFF14	0.28	-0.7
10,163	-		GFF14	0.30	-0.1
10,172	-		GFF14	0.31	-0.5
10,197	-		GFF14	0.33	-0.0
10,198	+		GFF14	0.33	+0.1
10,199	+		GFF14	0.33	-0.4
10,216	+		GFF14	0.35	+1.4
10,224	-		GFF14	0.36	-0.0
10,233	-		GFF14	0.36	-0.2
10,249	-		GFF14	0.38	-1.0
10,277	+		GFF14	0.41	+0.2
10,277	+		GFF14	0.41	-0.9
10,284	-		GFF14	0.41	+0.6
10,298	+		GFF14	0.42	-0.4
10,299	+		GFF14	0.43	-2.6
10,307	+		GFF14	0.43	-0.2
10,307	-		GFF14	0.43	-0.7
10,308	+		GFF14	0.43	+0.1
10,323	-		GFF14	0.45	-2.4
10,350	+		GFF14	0.47	+0.5
10,363	-		GFF14	0.49	-1.5
10,375	+		GFF14	0.50	-0.6
10,375	+		GFF14	0.50	-1.0
10,383	-		GFF14	0.50	+0.7
10,383	-		GFF14	0.50	-0.8
10,383	-		GFF14	0.50	+1.0
10,392	+		GFF14	0.51	+0.2
10,406	+		GFF14	0.53	+0.3
10,412	+		GFF14	0.53	-1.2
10,415	-		GFF14	0.53	-0.3
10,417	+		GFF14	0.54	+1.2
10,417	+		GFF14	0.54	+0.4
10,417	+		GFF14	0.54	+0.7
10,417	+		GFF14	0.54	+0.4
10,417	+		GFF14	0.54	+1.2
10,417	+		GFF14	0.54	+0.5
10,417	+		GFF14	0.54	-0.7
10,417	+		GFF14	0.54	+0.6
10,417	+		GFF14	0.54	+0.1
10,417	+		GFF14	0.54	-3.0
10,417	+		GFF14	0.54	+0.0
10,417	+		GFF14	0.54	+0.1
10,417	+		GFF14	0.54	-1.1
10,417	+		GFF14	0.54	+0.3
10,417	+		GFF14	0.54	-1.2
10,417	+		GFF14	0.54	-0.7
10,417	+		GFF14	0.54	-0.6
10,417	+		GFF14	0.54	-0.6
10,417	+		GFF14	0.54	-1.0
10,417	+		GFF14	0.54	-2.4
10,417	+		GFF14	0.54	+0.5
10,417	+		GFF14	0.54	+0.1
10,417	+		GFF14	0.54	-0.5
10,417	+		GFF14	0.54	-1.7
10,417	+		GFF14	0.54	+1.0
10,417	+		GFF14	0.54	-1.0
10,417	+		GFF14	0.54	+0.6
10,417	+		GFF14	0.54	+0.2
10,417	+		GFF14	0.54	-0.5
10,417	+		GFF14	0.54	-0.9
10,417	+		GFF14	0.54	+0.5
10,417	+		GFF14	0.54	-1.9
10,417	+		GFF14	0.54	+0.4
10,417	+		GFF14	0.54	-1.6
10,417	+		GFF14	0.54	+0.8
10,417	+		GFF14	0.54	-0.5
10,417	+		GFF14	0.54	-0.3
10,417	+		GFF14	0.54	-0.1
10,425	-		GFF14	0.54	+0.2
10,425	-		GFF14	0.54	-2.4
10,425	-		GFF14	0.54	-1.6
10,425	-		GFF14	0.54	-0.1
10,425	-		GFF14	0.54	+0.4
10,425	-		GFF14	0.54	+0.9
10,425	-		GFF14	0.54	-1.2
10,425	-		GFF14	0.54	-0.7
10,425	-		GFF14	0.54	-1.2
10,425	-		GFF14	0.54	+0.3
10,425	-		GFF14	0.54	-2.0
10,425	-		GFF14	0.54	-1.0
10,425	-		GFF14	0.54	-2.1
10,425	-		GFF14	0.54	-1.0
10,425	-		GFF14	0.54	-0.4
10,425	-		GFF14	0.54	-0.0
10,425	-		GFF14	0.54	+0.1
10,425	-		GFF14	0.54	-0.5
10,425	-		GFF14	0.54	+0.5
10,425	-		GFF14	0.54	+0.0
10,425	-		GFF14	0.54	-1.2
10,425	-		GFF14	0.54	-0.2
10,425	-		GFF14	0.54	-1.3
10,425	-		GFF14	0.54	+0.3
10,425	-		GFF14	0.54	-0.6
10,425	-		GFF14	0.54	-0.3
10,425	-		GFF14	0.54	-0.3
10,425	-		GFF14	0.54	-1.3
10,425	-		GFF14	0.54	-2.0
10,425	-		GFF14	0.54	-0.6
10,425	-		GFF14	0.54	+0.5
10,426	+		GFF14	0.54	+0.8
10,430	-		GFF14	0.55	+0.7
10,434	+		GFF14	0.55	-2.2
10,435	-		GFF14	0.55	+0.3
10,451	+		GFF14	0.57	-0.2
10,465	-		GFF14	0.58	-2.1
10,481	+		GFF14	0.59	-1.5
10,487	-		GFF14	0.60	-1.6
10,489	-		GFF14	0.60	-0.4
10,489	-		GFF14	0.60	-0.8
10,500	+		GFF14	0.61	+0.1
10,511	+		GFF14	0.62	+0.0
10,519	-		GFF14	0.63	-0.2
10,519	-		GFF14	0.63	+1.3
10,519	-		GFF14	0.63	-0.6
10,521	+		GFF14	0.63	-1.1
10,524	-		GFF14	0.63	+0.5
10,541	+		GFF14	0.65	+0.5
10,551	-		GFF14	0.66	+1.0
10,551	-		GFF14	0.66	-0.2
10,611	+		GFF14	0.71	+0.9
10,619	-		GFF14	0.72	+0.0
10,619	-		GFF14	0.72	+1.0
10,635	-		GFF14	0.74	-0.6
10,638	+		GFF14	0.74	-0.1
10,644	+		GFF14	0.75	-1.4
10,646	-		GFF14	0.75	+0.4
10,652	-		GFF14	0.75	+0.0
10,652	-		GFF14	0.75	-0.8
10,652	-		GFF14	0.75	-1.6
10,652	-		GFF14	0.75	+0.3
10,659	+		GFF14	0.76	-0.7
10,667	-		GFF14	0.77	-0.6
10,667	-		GFF14	0.77	-1.4
10,668	-		GFF14	0.77	+0.6
10,692	+		GFF14	0.79	-0.0
10,692	+		GFF14	0.79	+0.5
10,692	+		GFF14	0.79	+0.4
10,692	+		GFF14	0.79	+0.1
10,692	+		GFF14	0.79	-0.7
10,700	-		GFF14	0.80	+1.0
10,700	-		GFF14	0.80	+1.0
10,700	-		GFF14	0.80	-1.1
10,700	-		GFF14	0.80	+0.2
10,700	-		GFF14	0.80	+0.9
10,700	-		GFF14	0.80	-0.3
10,709	+		GFF14	0.81	-0.4
10,725	+		GFF14	0.82	-1.4
10,725	+		GFF14	0.82	-0.6
10,726	-		GFF14	0.82	-0.4
10,737	+		GFF14	0.83	-0.5
10,737	+		GFF14	0.83	-0.5
10,737	+		GFF14	0.83	-0.2
10,737	+		GFF14	0.83	-0.8
10,742	+		GFF14	0.84	-1.7
10,745	-		GFF14	0.84	-1.5
10,745	-		GFF14	0.84	-0.5
10,748	+		GFF14	0.84	+0.8
10,771	+		GFF14	0.86	+0.4
10,771	+		GFF14	0.86	+0.4
10,771	+		GFF14	0.86	-2.2
10,773	+		GFF14	0.86	+0.3
10,773	+		GFF14	0.86	-2.0
10,779	-		GFF14	0.87	-0.5
10,810	+		GFF14	0.90	-0.1
10,810	+		GFF14	0.90	+0.5
10,810	+		GFF14	0.90	+0.5
10,810	+		GFF14	0.90	-1.4
10,810	+		GFF14	0.90	+1.0
10,810	+		GFF14	0.90	+0.7
10,810	+		GFF14	0.90	-2.7
10,810	+		GFF14	0.90	+0.9
10,810	+		GFF14	0.90	+0.1
10,810	+		GFF14	0.90	-2.2
10,810	+		GFF14	0.90	+1.3
10,810	+		GFF14	0.90	-1.6
10,810	+		GFF14	0.90	-1.6
10,810	+		GFF14	0.90	-2.0
10,810	+		GFF14	0.90	-0.9
10,810	+		GFF14	0.90	+0.5
10,810	+		GFF14	0.90	-0.4
10,810	+		GFF14	0.90	+1.4
10,810	+		GFF14	0.90	+0.6
10,810	+		GFF14	0.90	-1.3
10,810	+		GFF14	0.90	-0.4
10,810	+		GFF14	0.90	-1.7
10,810	+		GFF14	0.90	+0.1
10,816	+				-0.2
10,816	+				-0.8
10,816	+				-0.2
10,817	+				+0.5
10,818	-				-0.8
10,818	-				+1.8
10,818	-				+0.0
10,818	-				+0.2
10,818	-				+0.8
10,818	-				-0.1
10,818	-				+0.5
10,818	-				-1.2
10,818	-				-0.4
10,818	-				+1.3
10,818	-				-0.2
10,818	-				+1.1
10,818	-				-0.7
10,818	-				-0.2
10,818	-				-0.2
10,818	-				-3.0
10,818	-				-0.9
10,818	-				+1.1
10,824	+				+0.2
10,824	+				+0.2
10,824	-				-0.7
10,824	-				-0.1
10,825	-				+0.1
10,832	-				-3.1
10,839	-				+0.3
10,844	+				-0.1
10,844	+				+1.5
10,844	+				-1.3
10,844	+				-0.2
10,844	+				+0.2
10,844	+				-0.4