Strain Fitness in Sphingobium sp. HT1-2 around GFF1283

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,311,081	-		GFF1282	0.11	-1.8
1,311,088	+		GFF1282	0.12	+0.6
1,311,096	-		GFF1282	0.12	-0.9
1,311,098	-		GFF1282	0.13	-0.9
1,311,103	-		GFF1282	0.13	-0.8
1,311,157	+		GFF1282	0.19	+0.5
1,311,157	+		GFF1282	0.19	+0.1
1,311,182	-		GFF1282	0.22	+0.6
1,311,194	-		GFF1282	0.23	+0.8
1,311,194	-		GFF1282	0.23	+0.6
1,311,203	+		GFF1282	0.24	+0.1
1,311,203	+		GFF1282	0.24	-0.5
1,311,208	+		GFF1282	0.25	-0.9
1,311,211	-		GFF1282	0.25	-0.4
1,311,237	-		GFF1282	0.28	+0.4
1,311,259	+		GFF1282	0.31	+1.0
1,311,259	+		GFF1282	0.31	-1.2
1,311,259	+		GFF1282	0.31	+0.2
1,311,259	+		GFF1282	0.31	-0.5
1,311,264	+		GFF1282	0.31	-0.3
1,311,267	-		GFF1282	0.32	+0.5
1,311,269	+		GFF1282	0.32	-1.7
1,311,272	-		GFF1282	0.32	-0.6
1,311,277	-		GFF1282	0.33	+0.4
1,311,298	+		GFF1282	0.35	+0.1
1,311,307	+		GFF1282	0.36	-0.3
1,311,307	+		GFF1282	0.36	+0.5
1,311,308	-		GFF1282	0.36	+0.2
1,311,318	+		GFF1282	0.37	-0.7
1,311,321	+		GFF1282	0.38	-1.2
1,311,342	+		GFF1282	0.40	-1.1
1,311,352	-		GFF1282	0.41	-1.0
1,311,398	-		GFF1282	0.46	-2.9
1,311,399	-		GFF1282	0.46	-0.6
1,311,414	+		GFF1282	0.48	+0.4
1,311,442	+		GFF1282	0.51	-0.2
1,311,442	+		GFF1282	0.51	-1.2
1,311,442	+		GFF1282	0.51	+0.4
1,311,442	+		GFF1282	0.51	-0.4
1,311,442	+		GFF1282	0.51	+0.1
1,311,442	+		GFF1282	0.51	+0.3
1,311,442	+		GFF1282	0.51	-2.7
1,311,447	+		GFF1282	0.52	-0.5
1,311,450	-		GFF1282	0.52	-1.8
1,311,450	-		GFF1282	0.52	+0.4
1,311,450	-		GFF1282	0.52	+0.8
1,311,450	-		GFF1282	0.52	-2.0
1,311,450	-		GFF1282	0.52	-0.4
1,311,465	+		GFF1282	0.54	-0.6
1,311,465	+		GFF1282	0.54	-0.6
1,311,465	+		GFF1282	0.54	-0.7
1,311,465	+		GFF1282	0.54	-0.4
1,311,465	+		GFF1282	0.54	-0.2
1,311,465	+		GFF1282	0.54	+0.0
1,311,465	+		GFF1282	0.54	+0.4
1,311,465	+		GFF1282	0.54	-0.0
1,311,465	+		GFF1282	0.54	-0.3
1,311,465	+		GFF1282	0.54	-1.2
1,311,465	+		GFF1282	0.54	+0.8
1,311,470	+		GFF1282	0.54	-1.6
1,311,473	-		GFF1282	0.55	-1.5
1,311,473	-		GFF1282	0.55	-0.2
1,311,473	-		GFF1282	0.55	+0.2
1,311,473	-		GFF1282	0.55	+0.5
1,311,473	-		GFF1282	0.55	+0.4
1,311,473	-		GFF1282	0.55	+0.7
1,311,475	+		GFF1282	0.55	+0.6
1,311,478	-		GFF1282	0.55	+0.5
1,311,482	+		GFF1282	0.56	-1.0
1,311,503	-		GFF1282	0.58	-0.3
1,311,516	+		GFF1282	0.59	+1.1
1,311,521	+		GFF1282	0.60	-0.6
1,311,524	-		GFF1282	0.60	+0.1
1,311,533	+		GFF1282	0.61	+0.2
1,311,538	+		GFF1282	0.62	-2.1
1,311,538	+		GFF1282	0.62	+0.6
1,311,539	+		GFF1282	0.62	+0.8
1,311,546	-		GFF1282	0.63	-1.2
1,311,546	-		GFF1282	0.63	-1.0
1,311,548	+		GFF1282	0.63	-0.3
1,311,548	+		GFF1282	0.63	-1.6
1,311,548	+		GFF1282	0.63	-0.1
1,311,558	+		GFF1282	0.64	-0.4
1,311,564	+		GFF1282	0.65	+0.0
1,311,572	-		GFF1282	0.66	-0.4
1,311,572	-		GFF1282	0.66	-0.7
1,311,572	-		GFF1282	0.66	+0.4
1,311,572	-		GFF1282	0.66	-1.1
1,311,597	+		GFF1282	0.68	+0.2
1,311,597	+		GFF1282	0.68	-1.2
1,311,644	-		GFF1282	0.74	-1.9
1,311,645	-		GFF1282	0.74	+0.1
1,311,653	+		GFF1282	0.75	+0.1
1,311,653	+		GFF1282	0.75	-2.7
1,311,653	+		GFF1282	0.75	+0.3
1,311,661	-		GFF1282	0.75	+0.1
1,311,661	-		GFF1282	0.75	+0.4
1,311,661	-		GFF1282	0.75	+1.0
1,311,661	-		GFF1282	0.75	+0.6
1,311,663	+		GFF1282	0.76	+0.0
1,311,671	-		GFF1282	0.77	-1.5
1,311,671	-		GFF1282	0.77	+0.5
1,311,681	+		GFF1282	0.78	-0.1
1,311,701	+		GFF1282	0.80	-1.4
1,311,703	-		GFF1282	0.80	+0.2
1,311,722	+		GFF1282	0.82	-0.2
1,311,728	-		GFF1282	0.83	+1.2
1,311,751	-		GFF1282	0.86	-0.2
1,311,757	+		GFF1282	0.86	+0.1
1,311,757	-		GFF1282	0.86	-0.3
1,311,778	+		GFF1282	0.89	-1.0
1,311,785	+		GFF1282	0.89	-0.6
1,311,787	-		GFF1282	0.90	+0.6
1,311,793	-				+0.4
1,311,805	+				-0.2
1,311,805	+				-1.0
1,311,805	+				+0.2
1,311,813	-				+0.8
1,311,824	-				-0.9
1,311,831	+				-2.9
1,311,836	+				-0.3
1,311,841	+				-2.2
1,311,844	-				-0.3
1,311,850	+				-1.1
1,311,862	+				-1.7
1,311,862	+				-0.9
1,311,870	-				-0.0
1,311,870	-				+0.5
1,311,873	+				-0.6
1,311,883	-				-2.0
1,311,883	-				-0.6
1,311,883	-				+1.6
1,311,883	-				+0.7
1,311,883	-				+0.0
1,311,883	-				-0.8
1,311,883	-				-0.7
1,311,883	-				-1.9
1,311,883	-				+1.2
1,311,883	-				+0.7
1,311,883	-				-1.1
1,311,883	-				-1.4
1,311,883	-				+0.1
1,311,883	-				+0.8
1,311,883	-				-0.8
1,311,883	-				+0.2
1,311,883	-				-0.2
1,311,889	-				-0.5
1,311,971	+				+0.5
1,312,001	+				-0.9
1,312,003	+				-0.5
1,312,009	-				+1.4
1,312,019	+				+0.6
1,312,019	+				-0.2
1,312,019	+				+0.1
1,312,019	+				-1.8
1,312,026	-				-0.7
1,312,027	-				-0.7
1,312,044	-				+0.0
1,312,066	-				-1.5
1,312,085	+				-1.3
1,312,085	+				+1.0
1,312,088	+				-1.5
1,312,095	-				-0.2
1,312,132	+		GFF1283	0.13	+0.4
1,312,151	+		GFF1283	0.18	-0.5
1,312,151	+		GFF1283	0.18	-1.4
1,312,174	-		GFF1283	0.23	+0.0
1,312,208	-		GFF1283	0.31	-1.0
1,312,225	-		GFF1283	0.35	-0.1
1,312,225	-		GFF1283	0.35	-1.5
1,312,246	+		GFF1283	0.40	-0.8
1,312,249	+		GFF1283	0.41	+0.0
1,312,250	-		GFF1283	0.41	+1.0
1,312,255	+		GFF1283	0.42	-1.3
1,312,255	+		GFF1283	0.42	-0.2
1,312,263	-		GFF1283	0.44	-2.7
1,312,273	+		GFF1283	0.47	+0.0
1,312,275	-		GFF1283	0.47	-1.7
1,312,307	+		GFF1283	0.55	-1.4
1,312,314	+		GFF1283	0.56	-0.2
1,312,371	+		GFF1283	0.70	+0.3
1,312,384	-		GFF1283	0.73	+0.9
1,312,395	+		GFF1283	0.75	-1.0
1,312,402	-		GFF1283	0.77	-1.4
1,312,403	-		GFF1283	0.77	+0.7
1,312,403	-		GFF1283	0.77	-0.6
1,312,403	-		GFF1283	0.77	-1.4
1,312,403	-		GFF1283	0.77	+0.0
1,312,403	-		GFF1283	0.77	-0.2
1,312,420	+		GFF1283	0.81	-2.1
1,312,420	+		GFF1283	0.81	-1.2
1,312,428	-		GFF1283	0.83	-0.2
1,312,428	-		GFF1283	0.83	+1.0
1,312,428	-		GFF1283	0.83	-0.5
1,312,428	-		GFF1283	0.83	-0.4
1,312,428	-		GFF1283	0.83	-1.7
1,312,428	-		GFF1283	0.83	-0.8
1,312,439	+		GFF1283	0.86	-0.7
1,312,439	+		GFF1283	0.86	-1.5
1,312,439	+		GFF1283	0.86	+0.0
1,312,440	+		GFF1283	0.86	-1.4
1,312,447	-		GFF1283	0.88	-0.6
1,312,447	-		GFF1283	0.88	+1.0
1,312,447	-		GFF1283	0.88	-1.5
1,312,447	-		GFF1283	0.88	+0.4
1,312,492	+				+0.3
1,312,502	-				-2.0
1,312,533	+				-0.8
1,312,537	-				-0.6
1,312,550	+				+0.8
1,312,555	+				-0.9
1,312,558	-				+0.3
1,312,558	-				-0.6
1,312,585	-				+0.6
1,312,585	-				-0.4
1,312,585	-				-0.4
1,312,598	+				-0.6
1,312,598	+				-0.6
1,312,606	-				-2.4
1,312,610	+				+0.6
1,312,610	+				-0.1
1,312,610	+				-0.7
1,312,615	+				-0.0
1,312,615	+				+0.3
1,312,615	+				-1.4
1,312,615	+				+0.5
1,312,620	+				-1.7
1,312,623	-				+0.2
1,312,623	-				-0.4
1,312,623	-				-0.3
1,312,623	-				+0.1
1,312,623	-				-0.4
1,312,623	-				-1.1
1,312,623	-				-0.8
1,312,628	-				+0.2
1,312,630	-				-0.3
1,312,644	+				+0.2
1,312,644	+				+1.3
1,312,644	+				-0.3
1,312,644	+				-0.6
1,312,644	+				-0.1
1,312,652	-				-0.6
1,312,652	-				+0.1
1,312,652	-				-0.9
1,312,652	-				-0.1
1,312,652	-				-0.4
1,312,653	+				-1.4
1,312,658	+				-3.2
1,312,658	+				-1.5
1,312,658	+				+0.4
1,312,658	+				-2.2
1,312,658	+				-1.9
1,312,658	+				-0.5
1,312,658	+				-0.8
1,312,658	+				+0.4
1,312,658	+				+1.1
1,312,658	+				+1.1
1,312,658	+				-1.6
1,312,658	+				+1.0
1,312,663	+				+0.0
1,312,663	+				+0.9
1,312,666	-				+1.4
1,312,666	-				+0.0
1,312,666	-				-0.6
1,312,666	-				-0.3
1,312,666	-				-2.9
1,312,666	-				-1.2
1,312,666	-				+0.5
1,312,666	-				-0.5
1,312,666	-				-1.1
1,312,666	-				+0.6
1,312,666	-				-1.5
1,312,666	-				-1.2
1,312,666	-				-1.0
1,312,666	-				+0.7
1,312,666	-				-0.7
1,312,666	-				-1.2
1,312,666	-				+1.6
1,312,666	-				-2.1
1,312,668	+				+0.2
1,312,668	+				-2.4
1,312,668	+				-2.2
1,312,668	+				-0.2
1,312,671	-				+0.0
1,312,687	+		GFF1284	0.10	+0.1
1,312,709	+		GFF1284	0.12	+0.3
1,312,714	+		GFF1284	0.12	+0.9
1,312,714	+		GFF1284	0.12	+0.5
1,312,714	+		GFF1284	0.12	-0.2
1,312,722	+		GFF1284	0.12	-2.0
1,312,722	+		GFF1284	0.12	+0.4
1,312,722	-		GFF1284	0.12	-0.9
1,312,744	-		GFF1284	0.14	-1.9
1,312,744	-		GFF1284	0.14	+1.4
1,312,751	-		GFF1284	0.14	+0.2
1,312,764	-		GFF1284	0.15	+0.5
1,312,793	+		GFF1284	0.16	+0.5
1,312,797	+		GFF1284	0.17	-1.0
1,312,801	-		GFF1284	0.17	-2.1
1,312,801	-		GFF1284	0.17	-2.7
1,312,803	+		GFF1284	0.17	-0.6
1,312,804	+		GFF1284	0.17	+0.2
1,312,810	-		GFF1284	0.17	-0.4
1,312,810	-		GFF1284	0.17	-0.8
1,312,812	+		GFF1284	0.17	+1.3
1,312,812	+		GFF1284	0.17	+0.2
1,312,812	-		GFF1284	0.17	+0.1
1,312,817	+		GFF1284	0.18	+0.0
1,312,817	+		GFF1284	0.18	-0.0
1,312,825	-		GFF1284	0.18	-0.1
1,312,825	-		GFF1284	0.18	-2.6
1,312,825	-		GFF1284	0.18	+0.2
1,312,852	+		GFF1284	0.20	-0.7
1,312,852	+		GFF1284	0.20	-1.2
1,312,860	-		GFF1284	0.20	-1.2
1,312,861	-		GFF1284	0.20	+0.4
1,312,899	+		GFF1284	0.22	-1.2
1,312,899	+		GFF1284	0.22	-1.9
1,312,899	+		GFF1284	0.22	+0.6
1,312,899	+		GFF1284	0.22	+0.1
1,312,899	+		GFF1284	0.22	-0.5
1,312,899	+		GFF1284	0.22	+0.4
1,312,899	+		GFF1284	0.22	+1.1
1,312,899	+		GFF1284	0.22	-0.7
1,312,899	+		GFF1284	0.22	+0.2
1,312,899	+		GFF1284	0.22	+0.2
1,312,899	+		GFF1284	0.22	-0.0
1,312,899	+		GFF1284	0.22	-0.2
1,312,899	+		GFF1284	0.22	+0.9
1,312,899	+		GFF1284	0.22	+0.5
1,312,907	-		GFF1284	0.23	+0.5
1,312,907	-		GFF1284	0.23	-0.8
1,312,907	-		GFF1284	0.23	+0.9
1,312,907	-		GFF1284	0.23	-0.6
1,312,907	-		GFF1284	0.23	-0.8
1,312,907	-		GFF1284	0.23	-1.9
1,312,907	-		GFF1284	0.23	-0.5
1,312,907	-		GFF1284	0.23	+1.1
1,312,907	-		GFF1284	0.23	-1.0
1,312,907	-		GFF1284	0.23	-0.7
1,312,907	-		GFF1284	0.23	-2.2
1,312,907	-		GFF1284	0.23	-1.5
1,312,907	-		GFF1284	0.23	+0.4
1,312,907	-		GFF1284	0.23	-0.2
1,312,907	-		GFF1284	0.23	+0.6
1,312,907	-		GFF1284	0.23	-1.6
1,312,907	-		GFF1284	0.23	-1.0
1,312,907	-		GFF1284	0.23	-0.2
1,312,907	-		GFF1284	0.23	-0.9
1,312,910	+		GFF1284	0.23	+0.2
1,312,927	+		GFF1284	0.24	-1.7
1,312,933	-		GFF1284	0.24	-0.2
1,312,933	-		GFF1284	0.24	-0.9
1,312,968	+		GFF1284	0.26	-0.4
1,312,994	-		GFF1284	0.28	+0.8
1,312,994	-		GFF1284	0.28	-1.7
1,313,004	-		GFF1284	0.28	-2.4
1,313,064	+		GFF1284	0.31	-0.2
1,313,082	+		GFF1284	0.32	-0.4
1,313,082	+		GFF1284	0.32	-0.5
1,313,090	-		GFF1284	0.33	-1.0
1,313,091	-		GFF1284	0.33	+1.4
1,313,092	-		GFF1284	0.33	+1.1
1,313,108	+		GFF1284	0.34	+0.1
1,313,108	+		GFF1284	0.34	-1.9
1,313,108	+		GFF1284	0.34	-1.4
1,313,112	+		GFF1284	0.34	-0.0
1,313,113	+		GFF1284	0.34	+0.3
1,313,120	-		GFF1284	0.34	-0.2
1,313,126	+		GFF1284	0.35	+0.1
1,313,126	+		GFF1284	0.35	-0.3
1,313,152	-		GFF1284	0.36	-0.4
1,313,162	-		GFF1284	0.37	-0.7
1,313,194	+		GFF1284	0.39	-1.7
1,313,202	-		GFF1284	0.39	+0.3
1,313,204	-		GFF1284	0.39	-0.6
1,313,204	-		GFF1284	0.39	+0.1
1,313,206	+		GFF1284	0.39	+0.6
1,313,224	+		GFF1284	0.40	-0.1
1,313,234	+		GFF1284	0.41	-0.2
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