Strain Fitness in Sphingobium sp. HT1-2 around GFF1275

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,301,624	+				-0.1
1,301,624	+				-1.3
1,301,624	+				-1.4
1,301,632	-				-1.4
1,301,633	+				-2.3
1,301,641	-				-1.6
1,301,641	-				+0.3
1,301,695	+		GFF1273	0.30	+0.3
1,301,695	+		GFF1273	0.30	-2.4
1,301,703	-		GFF1273	0.33	-2.5
1,301,733	-		GFF1273	0.44	-2.4
1,301,742	+		GFF1273	0.48	-1.9
1,301,744	+		GFF1273	0.49	-0.4
1,301,752	-		GFF1273	0.52	-2.9
1,301,757	-		GFF1273	0.54	+0.6
1,301,765	+		GFF1273	0.57	+0.4
1,301,783	-		GFF1273	0.64	-0.3
1,301,785	+		GFF1273	0.64	-1.4
1,301,805	+		GFF1273	0.72	-0.6
1,301,812	-		GFF1273	0.75	-0.5
1,301,841	-		GFF1273	0.86	-1.9
1,301,842	-		GFF1273	0.86	-2.1
1,301,863	+				-0.7
1,301,870	-				-2.9
1,302,435	-				-1.6
1,302,459	+				+0.9
1,302,462	-				+1.1
1,302,479	+				-0.8
1,302,481	+				+0.3
1,302,481	+				-1.9
1,302,489	-				-0.4
1,302,489	-				-0.9
1,302,507	+				+1.6
1,302,507	+				-2.5
1,302,515	-				-0.5
1,302,517	+				-0.2
1,302,531	+				-1.2
1,302,538	-				-2.4
1,302,539	-				-0.5
1,302,541	+				-1.1
1,302,541	+				+1.0
1,302,543	+				-0.4
1,302,548	+				-0.5
1,302,549	-				-0.5
1,302,577	+				+0.1
1,302,578	+				+0.5
1,302,578	+				+0.1
1,302,578	+				-0.4
1,302,578	+				-1.2
1,302,585	-				-0.9
1,302,588	+				-0.6
1,302,588	+				+0.8
1,302,588	+				+1.2
1,302,592	-				+1.0
1,302,596	-				-2.0
1,302,596	-				-0.2
1,302,662	-				-0.5
1,302,680	+				-0.2
1,302,680	+				+0.3
1,302,681	-				-1.5
1,302,693	-				-1.2
1,302,701	-				-1.6
1,302,718	+		GFF1275	0.11	+0.2
1,302,742	+		GFF1275	0.12	+0.2
1,302,745	-		GFF1275	0.13	-1.2
1,302,768	+		GFF1275	0.14	-2.2
1,302,821	-		GFF1275	0.18	-0.5
1,302,834	+		GFF1275	0.19	+1.6
1,302,834	+		GFF1275	0.19	-0.3
1,302,835	+		GFF1275	0.19	-1.2
1,302,842	-		GFF1275	0.20	+0.8
1,302,845	+		GFF1275	0.20	-1.2
1,302,879	+		GFF1275	0.23	+0.3
1,302,879	+		GFF1275	0.23	+1.3
1,302,879	+		GFF1275	0.23	-0.1
1,302,889	+		GFF1275	0.24	+0.8
1,302,889	+		GFF1275	0.24	+0.6
1,302,908	+		GFF1275	0.25	-1.7
1,302,946	+		GFF1275	0.28	-1.6
1,302,954	-		GFF1275	0.28	+0.2
1,302,972	+		GFF1275	0.30	+0.7
1,303,003	-		GFF1275	0.32	+0.1
1,303,025	+		GFF1275	0.34	-1.9
1,303,025	+		GFF1275	0.34	-0.4
1,303,025	+		GFF1275	0.34	+0.7
1,303,030	+		GFF1275	0.34	-1.4
1,303,033	-		GFF1275	0.34	-1.0
1,303,033	-		GFF1275	0.34	-1.5
1,303,033	-		GFF1275	0.34	-1.2
1,303,035	+		GFF1275	0.35	+0.7
1,303,035	+		GFF1275	0.35	+0.3
1,303,035	+		GFF1275	0.35	-1.6
1,303,035	+		GFF1275	0.35	-0.6
1,303,035	+		GFF1275	0.35	-2.1
1,303,035	+		GFF1275	0.35	+0.3
1,303,035	+		GFF1275	0.35	+0.2
1,303,035	+		GFF1275	0.35	-0.6
1,303,041	+		GFF1275	0.35	-0.5
1,303,043	-		GFF1275	0.35	-1.0
1,303,075	+		GFF1275	0.38	-1.2
1,303,075	+		GFF1275	0.38	+1.2
1,303,075	+		GFF1275	0.38	-0.4
1,303,078	-		GFF1275	0.38	-1.6
1,303,080	+		GFF1275	0.38	-2.4
1,303,085	+		GFF1275	0.38	+1.8
1,303,088	-		GFF1275	0.39	+0.6
1,303,088	-		GFF1275	0.39	+1.2
1,303,095	+		GFF1275	0.39	+2.6
1,303,095	+		GFF1275	0.39	+0.1
1,303,103	-		GFF1275	0.40	-2.2
1,303,103	-		GFF1275	0.40	-1.4
1,303,114	-		GFF1275	0.41	-1.1
1,303,120	-		GFF1275	0.41	-1.1
1,303,125	+		GFF1275	0.41	+1.4
1,303,125	+		GFF1275	0.41	-0.1
1,303,125	+		GFF1275	0.41	-1.9
1,303,133	-		GFF1275	0.42	-1.0
1,303,133	-		GFF1275	0.42	-0.7
1,303,137	-		GFF1275	0.42	-0.6
1,303,137	-		GFF1275	0.42	-2.3
1,303,169	+		GFF1275	0.45	-0.3
1,303,240	+		GFF1275	0.50	+1.0
1,303,297	+		GFF1275	0.54	-0.7
1,303,297	+		GFF1275	0.54	+2.3
1,303,305	-		GFF1275	0.55	-0.8
1,303,338	-		GFF1275	0.58	-1.2
1,303,342	+		GFF1275	0.58	-0.8
1,303,350	-		GFF1275	0.58	-0.7
1,303,350	-		GFF1275	0.58	+1.1
1,303,384	+		GFF1275	0.61	-0.1
1,303,495	+		GFF1275	0.69	+0.4
1,303,509	+		GFF1275	0.71	-0.5
1,303,531	+		GFF1275	0.72	+0.6
1,303,605	+		GFF1275	0.78	-0.0
1,303,654	+		GFF1275	0.82	+1.0
1,303,662	-		GFF1275	0.82	-0.8
1,303,662	-		GFF1275	0.82	-0.2
1,303,679	+		GFF1275	0.83	-1.6
1,303,685	-		GFF1275	0.84	+0.1
1,303,687	-		GFF1275	0.84	+0.1
1,303,687	-		GFF1275	0.84	-0.3
1,303,695	-		GFF1275	0.85	-1.1
1,303,697	+		GFF1275	0.85	-2.2
1,303,697	+		GFF1275	0.85	+0.7
1,303,734	+		GFF1275	0.88	-0.5
1,303,766	+				+0.1
1,303,767	+				-1.6
1,303,767	+				+1.2
1,303,774	-				-0.8
1,303,774	-				+1.1
1,303,775	-				-0.9
1,303,775	-				+0.4
1,303,775	-				-0.6
1,303,779	-				-1.2
1,303,779	-				-0.4
1,303,782	+				-0.8
1,303,782	+				-0.9
1,303,782	+				-0.5
1,303,782	+				+0.4
1,303,782	+				+0.0
1,303,782	+				-1.9
1,303,782	+				-0.2
1,303,782	+				-1.4
1,303,782	+				+0.4
1,303,782	+				+1.6
1,303,782	+				-0.7
1,303,782	+				-0.7
1,303,790	-				+0.0
1,303,790	-				-0.5
1,303,790	-				-1.4
1,303,790	-				+0.4
1,303,790	-				-1.1
1,303,790	-				-0.7
1,303,790	-				-1.2
1,303,790	-				+0.1
1,303,790	-				-0.0
1,303,790	-				+0.0
1,303,790	-				-1.1
1,303,795	-				-1.4
1,303,800	-				+0.7
1,303,836	-				+0.9
1,303,836	-				-2.3
1,303,838	+				-0.2
1,303,855	+				-0.5
1,303,855	+				-0.3
1,303,870	-				+1.1
1,303,874	-				-0.3
1,303,877	+				-2.4
1,303,906	+				-1.6
1,303,908	-				+0.0
1,303,909	+				+0.8
1,303,917	-		GFF1276	0.11	-0.9
1,303,917	-		GFF1276	0.11	-0.1
1,303,917	-		GFF1276	0.11	-0.1
1,303,917	-		GFF1276	0.11	-1.0
1,303,917	-		GFF1276	0.11	-1.0
1,303,917	-		GFF1276	0.11	-0.7
1,303,917	-		GFF1276	0.11	-0.4
1,303,987	+		GFF1276	0.44	+0.9
1,304,049	+		GFF1276	0.74	+0.5
1,304,049	+		GFF1276	0.74	-0.6
1,304,049	+		GFF1276	0.74	-0.2
1,304,049	+		GFF1276	0.74	-2.0
1,304,057	-		GFF1276	0.78	+0.5
1,304,057	-		GFF1276	0.78	-1.1
1,304,057	-		GFF1276	0.78	+0.6
1,304,083	+				+1.8
1,304,091	-				-0.3
1,304,106	+				-1.3
1,304,114	-				+1.6
1,304,114	-				-0.9
1,304,171	+				-1.4
1,304,173	-				-0.4
1,304,176	+				+0.9
1,304,234	+				-0.2
1,304,234	+				+0.5
1,304,239	+				+0.9
1,304,239	+				+1.7
1,304,239	+				-1.0
1,304,242	-				-1.9
1,304,242	-				+0.1
1,304,247	-				-0.7
1,304,247	-				-0.4
1,304,247	-				+0.2
1,304,269	-				-1.2
1,304,274	+				+0.8
1,304,282	-				-0.4
1,304,293	+				+1.5
1,304,303	+				+0.8
1,304,303	+				-0.4
1,304,304	+				+0.2
1,304,311	+				+0.4
1,304,311	+				-1.4
1,304,311	+				+0.2
1,304,311	+				+0.0
1,304,319	-				-0.4
1,304,319	-				-0.7
1,304,326	+				+0.5
1,304,328	-				-0.6
1,304,381	-				-1.7
1,304,381	-				-1.2
1,304,404	+				+0.1
1,304,412	-				-0.7
1,304,436	+		GFF1277	0.11	+0.1
1,304,436	+		GFF1277	0.11	-0.5
1,304,443	+		GFF1277	0.11	-0.9
1,304,443	+		GFF1277	0.11	+1.1
1,304,449	-		GFF1277	0.11	-1.2
1,304,451	-		GFF1277	0.12	+0.6
1,304,451	-		GFF1277	0.12	-0.2
1,304,463	+		GFF1277	0.12	+0.4
1,304,464	+		GFF1277	0.12	-1.8
1,304,464	+		GFF1277	0.12	-0.2
1,304,466	-		GFF1277	0.12	+0.4
1,304,537	+		GFF1277	0.16	+1.2
1,304,546	-		GFF1277	0.16	-1.1
1,304,547	+		GFF1277	0.16	-2.4
1,304,552	+		GFF1277	0.16	-0.7
1,304,553	+		GFF1277	0.16	-0.8
1,304,553	+		GFF1277	0.16	-2.9
1,304,553	+		GFF1277	0.16	-3.6
1,304,553	+		GFF1277	0.16	+0.2
1,304,553	+		GFF1277	0.16	+1.1
1,304,553	+		GFF1277	0.16	+0.2
1,304,553	+		GFF1277	0.16	-2.2
1,304,555	-		GFF1277	0.17	-2.1
1,304,555	-		GFF1277	0.17	+0.5
1,304,560	-		GFF1277	0.17	+1.1
1,304,561	-		GFF1277	0.17	-0.0
1,304,561	-		GFF1277	0.17	-0.8
1,304,561	-		GFF1277	0.17	+1.1
1,304,561	-		GFF1277	0.17	-1.9
1,304,587	+		GFF1277	0.18	+0.2
1,304,594	+		GFF1277	0.18	-2.7
1,304,594	+		GFF1277	0.18	-1.1
1,304,602	-		GFF1277	0.19	-1.2
1,304,602	-		GFF1277	0.19	-0.3
1,304,602	-		GFF1277	0.19	-2.6
1,304,602	-		GFF1277	0.19	-1.9
1,304,602	-		GFF1277	0.19	+1.0
1,304,602	-		GFF1277	0.19	+0.9
1,304,630	-		GFF1277	0.20	-2.3
1,304,677	+		GFF1277	0.22	+0.9
1,304,693	+		GFF1277	0.23	-0.9
1,304,693	+		GFF1277	0.23	-0.0
1,304,701	+		GFF1277	0.24	-0.4
1,304,701	+		GFF1277	0.24	-1.6
1,304,701	-		GFF1277	0.24	+0.7
1,304,701	-		GFF1277	0.24	+0.8
1,304,701	-		GFF1277	0.24	+0.1
1,304,701	-		GFF1277	0.24	-0.0
1,304,701	-		GFF1277	0.24	-1.1
1,304,701	-		GFF1277	0.24	-1.2
1,304,701	-		GFF1277	0.24	-0.5
1,304,701	-		GFF1277	0.24	+0.5
1,304,701	-		GFF1277	0.24	+1.2
1,304,706	+		GFF1277	0.24	+0.3
1,304,709	-		GFF1277	0.24	+0.9
1,304,709	-		GFF1277	0.24	-0.6
1,304,719	-		GFF1277	0.24	+0.8
1,304,731	+		GFF1277	0.25	+0.5
1,304,739	-		GFF1277	0.25	-2.4
1,304,751	+		GFF1277	0.26	-0.6
1,304,766	+		GFF1277	0.27	+0.6
1,304,779	-		GFF1277	0.27	-0.1
1,304,787	+		GFF1277	0.28	+0.7
1,304,787	+		GFF1277	0.28	-2.0
1,304,824	-		GFF1277	0.30	-1.2
1,304,835	+		GFF1277	0.30	-0.1
1,304,835	+		GFF1277	0.30	+0.9
1,304,835	+		GFF1277	0.30	-0.3
1,304,843	-		GFF1277	0.30	-0.6
1,304,891	+		GFF1277	0.33	+1.5
1,304,892	+		GFF1277	0.33	-0.1
1,304,893	+		GFF1277	0.33	-1.0
1,304,893	+		GFF1277	0.33	-0.9
1,304,893	+		GFF1277	0.33	-0.6
1,304,893	+		GFF1277	0.33	-1.0
1,304,894	-		GFF1277	0.33	-1.5
1,304,897	+		GFF1277	0.33	-0.7