Strain Fitness in Sphingobium sp. HT1-2 around GFF1257

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,284,606	+				+0.3
1,284,606	+				+0.2
1,284,606	+				+0.6
1,284,614	-				-1.5
1,284,614	-				+0.5
1,284,633	-				+0.6
1,284,633	-				-0.5
1,284,633	-				-1.4
1,284,634	-				+0.8
1,284,677	+				+0.9
1,284,700	-				-0.7
1,284,701	+				+0.1
1,284,722	+				+0.0
1,284,726	+				+0.3
1,284,756	+				-0.0
1,284,756	+				-0.6
1,284,756	+				-1.6
1,284,758	+				-0.4
1,284,764	-				+0.2
1,284,764	-				-0.2
1,284,785	-				+0.2
1,284,848	+		GFF1256	0.17	+0.0
1,284,849	-		GFF1256	0.17	+1.4
1,284,849	-		GFF1256	0.17	-0.5
1,284,853	+		GFF1256	0.17	-1.7
1,284,869	-		GFF1256	0.19	+0.4
1,284,871	+		GFF1256	0.19	-0.9
1,284,881	-		GFF1256	0.20	-0.3
1,284,891	-		GFF1256	0.21	+0.0
1,284,894	+		GFF1256	0.22	+1.3
1,284,894	+		GFF1256	0.22	-1.2
1,284,894	+		GFF1256	0.22	+0.9
1,284,894	+		GFF1256	0.22	+0.1
1,284,894	+		GFF1256	0.22	+0.8
1,284,894	+		GFF1256	0.22	-1.6
1,284,894	+		GFF1256	0.22	-0.3
1,284,894	+		GFF1256	0.22	-0.3
1,284,894	+		GFF1256	0.22	-0.7
1,284,894	+		GFF1256	0.22	+0.8
1,284,894	+		GFF1256	0.22	-0.8
1,284,894	+		GFF1256	0.22	-1.2
1,284,894	+		GFF1256	0.22	-1.5
1,284,894	+		GFF1256	0.22	-0.8
1,284,894	+		GFF1256	0.22	+0.7
1,284,894	+		GFF1256	0.22	-1.0
1,284,894	+		GFF1256	0.22	+0.4
1,284,894	+		GFF1256	0.22	+0.1
1,284,902	-		GFF1256	0.23	-1.0
1,284,902	-		GFF1256	0.23	-0.2
1,284,902	-		GFF1256	0.23	-0.2
1,284,902	-		GFF1256	0.23	-0.4
1,284,902	-		GFF1256	0.23	+0.2
1,284,902	-		GFF1256	0.23	+0.3
1,284,902	-		GFF1256	0.23	-0.7
1,284,902	-		GFF1256	0.23	+1.7
1,284,902	-		GFF1256	0.23	-0.4
1,284,902	-		GFF1256	0.23	-1.4
1,284,902	-		GFF1256	0.23	+0.5
1,284,902	-		GFF1256	0.23	+0.6
1,284,902	-		GFF1256	0.23	+1.0
1,284,902	-		GFF1256	0.23	-1.6
1,284,902	-		GFF1256	0.23	-0.3
1,284,902	-		GFF1256	0.23	+0.8
1,284,902	-		GFF1256	0.23	-1.0
1,284,902	-		GFF1256	0.23	+0.7
1,284,902	-		GFF1256	0.23	-0.5
1,284,902	-		GFF1256	0.23	+0.6
1,284,902	-		GFF1256	0.23	-0.2
1,284,902	-		GFF1256	0.23	+0.6
1,284,907	-		GFF1256	0.23	+0.9
1,284,912	-		GFF1256	0.24	+1.0
1,284,912	-		GFF1256	0.24	-0.0
1,284,912	-		GFF1256	0.24	+0.0
1,284,926	-		GFF1256	0.25	+0.5
1,284,932	-		GFF1256	0.26	+0.7
1,284,936	-		GFF1256	0.26	+0.3
1,284,938	+		GFF1256	0.26	-0.7
1,284,994	+		GFF1256	0.33	+0.5
1,285,002	-		GFF1256	0.34	-0.8
1,285,002	-		GFF1256	0.34	-2.0
1,285,009	-		GFF1256	0.34	-1.0
1,285,010	-		GFF1256	0.34	+0.1
1,285,013	+		GFF1256	0.35	+0.6
1,285,026	-		GFF1256	0.36	-2.5
1,285,033	+		GFF1256	0.37	+0.1
1,285,033	+		GFF1256	0.37	-0.4
1,285,033	+		GFF1256	0.37	-0.2
1,285,033	+		GFF1256	0.37	-1.5
1,285,033	+		GFF1256	0.37	+0.5
1,285,033	+		GFF1256	0.37	+0.1
1,285,033	+		GFF1256	0.37	-0.6
1,285,034	+		GFF1256	0.37	-0.4
1,285,034	+		GFF1256	0.37	-0.1
1,285,041	-		GFF1256	0.38	-0.9
1,285,041	-		GFF1256	0.38	-0.3
1,285,041	-		GFF1256	0.38	+0.4
1,285,062	-		GFF1256	0.40	-0.2
1,285,072	+		GFF1256	0.41	+1.1
1,285,080	-		GFF1256	0.42	-1.2
1,285,080	-		GFF1256	0.42	+0.7
1,285,080	-		GFF1256	0.42	+1.0
1,285,083	+		GFF1256	0.42	-0.3
1,285,083	+		GFF1256	0.42	+0.1
1,285,083	+		GFF1256	0.42	+0.6
1,285,083	+		GFF1256	0.42	+0.8
1,285,083	+		GFF1256	0.42	-0.1
1,285,083	+		GFF1256	0.42	-1.2
1,285,088	+		GFF1256	0.43	-0.8
1,285,088	+		GFF1256	0.43	+1.1
1,285,088	+		GFF1256	0.43	-0.1
1,285,088	+		GFF1256	0.43	-1.5
1,285,088	+		GFF1256	0.43	-0.7
1,285,088	+		GFF1256	0.43	-0.2
1,285,088	+		GFF1256	0.43	+0.5
1,285,088	+		GFF1256	0.43	+0.2
1,285,088	+		GFF1256	0.43	+0.3
1,285,088	+		GFF1256	0.43	-2.1
1,285,088	+		GFF1256	0.43	+0.2
1,285,088	+		GFF1256	0.43	-2.5
1,285,088	+		GFF1256	0.43	+0.9
1,285,088	+		GFF1256	0.43	-1.8
1,285,088	+		GFF1256	0.43	+1.4
1,285,088	+		GFF1256	0.43	-1.3
1,285,091	-		GFF1256	0.43	-1.6
1,285,091	-		GFF1256	0.43	+0.1
1,285,091	-		GFF1256	0.43	+0.1
1,285,096	-		GFF1256	0.44	-0.3
1,285,096	-		GFF1256	0.44	-0.8
1,285,096	-		GFF1256	0.44	-0.0
1,285,096	-		GFF1256	0.44	-0.8
1,285,096	-		GFF1256	0.44	+0.2
1,285,096	-		GFF1256	0.44	-1.2
1,285,096	-		GFF1256	0.44	-1.3
1,285,106	-		GFF1256	0.45	-0.2
1,285,158	+		GFF1256	0.51	+0.3
1,285,213	+		GFF1256	0.57	+0.3
1,285,213	+		GFF1256	0.57	-0.7
1,285,221	-		GFF1256	0.58	+0.0
1,285,234	-		GFF1256	0.59	+0.8
1,285,236	-		GFF1256	0.59	+0.4
1,285,276	-		GFF1256	0.64	-0.1
1,285,281	-		GFF1256	0.64	-1.0
1,285,286	+		GFF1256	0.65	-0.7
1,285,286	-		GFF1256	0.65	-0.2
1,285,294	-		GFF1256	0.66	-0.4
1,285,318	+		GFF1256	0.68	+0.2
1,285,343	+		GFF1256	0.71	+1.0
1,285,343	+		GFF1256	0.71	-0.4
1,285,351	-		GFF1256	0.72	-0.6
1,285,356	+		GFF1256	0.73	-0.2
1,285,377	-		GFF1256	0.75	+0.5
1,285,392	-		GFF1256	0.77	-0.0
1,285,409	-		GFF1256	0.78	+0.1
1,285,427	+		GFF1256	0.80	-0.5
1,285,427	+		GFF1256	0.80	+1.4
1,285,427	+		GFF1256	0.80	-0.4
1,285,429	+		GFF1256	0.81	-0.2
1,285,429	+		GFF1256	0.81	+0.2
1,285,429	+		GFF1256	0.81	-0.6
1,285,429	+		GFF1256	0.81	-0.9
1,285,429	+		GFF1256	0.81	+0.3
1,285,429	+		GFF1256	0.81	+0.5
1,285,429	+		GFF1256	0.81	-1.2
1,285,429	+		GFF1256	0.81	-0.4
1,285,437	-		GFF1256	0.82	-1.6
1,285,437	-		GFF1256	0.82	-0.7
1,285,437	-		GFF1256	0.82	+0.2
1,285,437	-		GFF1256	0.82	-2.0
1,285,437	-		GFF1256	0.82	+0.2
1,285,447	-		GFF1256	0.83	-0.1
1,285,455	+		GFF1256	0.84	+0.8
1,285,465	+		GFF1256	0.85	+1.0
1,285,478	-		GFF1256	0.86	-0.3
1,285,478	-		GFF1256	0.86	-2.6
1,285,486	+		GFF1256	0.87	-0.9
1,285,502	+		GFF1256	0.89	-2.0
1,285,533	+				+0.2
1,285,535	+				-0.8
1,285,568	+				-0.2
1,285,574	-				+0.2
1,285,578	+				-0.0
1,285,578	+				+0.3
1,285,586	-				-2.3
1,285,586	-				-0.5
1,285,596	-				+0.5
1,285,602	-				-0.2
1,285,604	+				+0.3
1,285,604	+				-1.0
1,285,604	+				-1.2
1,285,604	+				-2.5
1,285,609	+				+0.7
1,285,609	+				+0.9
1,285,612	-				-0.1
1,285,612	-				+0.8
1,285,612	-				-0.8
1,285,612	-				+0.1
1,285,612	-				-0.1
1,285,614	+				-0.0
1,285,623	-				-0.6
1,285,642	+				-2.1
1,285,647	+				+1.1
1,285,647	+				-0.0
1,285,647	+				+0.8
1,285,647	+				-0.2
1,285,647	+				-1.5
1,285,647	+				-1.4
1,285,647	-				+0.1
1,285,652	+				-0.4
1,285,652	+				-0.2
1,285,654	+				+0.2
1,285,654	+				-1.2
1,285,654	+				-0.8
1,285,655	-				-2.4
1,285,655	-				+0.7
1,285,655	-				-3.0
1,285,655	-				-0.1
1,285,655	-				-0.5
1,285,655	-				-0.6
1,285,655	-				+0.2
1,285,655	-				-1.4
1,285,655	-				-2.2
1,285,655	-				+0.4
1,285,660	-				+1.1
1,285,660	-				-0.5
1,285,661	+				-0.2
1,285,662	-				-0.8
1,285,662	-				-0.7
1,285,671	+				-0.6
1,285,679	-				-0.6
1,285,679	-				+0.9
1,285,679	-				-1.1
1,285,687	+		GFF1257	0.11	-0.6
1,285,738	+		GFF1257	0.17	+1.6
1,285,738	+		GFF1257	0.17	-0.1
1,285,738	+		GFF1257	0.17	-0.4
1,285,746	-		GFF1257	0.18	-1.5
1,285,768	+		GFF1257	0.21	-2.4
1,285,771	-		GFF1257	0.21	+0.0
1,285,789	+		GFF1257	0.23	+0.6
1,285,789	+		GFF1257	0.23	-1.4
1,285,789	+		GFF1257	0.23	-1.2
1,285,789	+		GFF1257	0.23	+1.1
1,285,789	+		GFF1257	0.23	+0.9
1,285,789	+		GFF1257	0.23	+0.6
1,285,789	+		GFF1257	0.23	+0.2
1,285,789	+		GFF1257	0.23	+0.0
1,285,789	+		GFF1257	0.23	-0.2
1,285,789	+		GFF1257	0.23	-1.6
1,285,789	+		GFF1257	0.23	-0.6
1,285,789	+		GFF1257	0.23	+0.1
1,285,789	+		GFF1257	0.23	-0.6
1,285,789	+		GFF1257	0.23	-2.0
1,285,789	+		GFF1257	0.23	+0.2
1,285,789	+		GFF1257	0.23	+0.4
1,285,789	+		GFF1257	0.23	-0.7
1,285,789	+		GFF1257	0.23	-0.1
1,285,797	-		GFF1257	0.24	+1.0
1,285,797	-		GFF1257	0.24	+0.8
1,285,797	-		GFF1257	0.24	+1.5
1,285,797	-		GFF1257	0.24	+0.8
1,285,797	-		GFF1257	0.24	-1.4
1,285,797	-		GFF1257	0.24	-1.0
1,285,797	-		GFF1257	0.24	-2.4
1,285,797	-		GFF1257	0.24	-2.4
1,285,797	-		GFF1257	0.24	+0.8
1,285,797	-		GFF1257	0.24	-0.8
1,285,797	-		GFF1257	0.24	-1.3
1,285,797	-		GFF1257	0.24	-0.0
1,285,797	-		GFF1257	0.24	-0.2
1,285,797	-		GFF1257	0.24	-1.9
1,285,797	-		GFF1257	0.24	-1.7
1,285,797	-		GFF1257	0.24	+0.2
1,285,798	-		GFF1257	0.25	+0.3
1,285,798	-		GFF1257	0.25	-2.3
1,285,813	+		GFF1257	0.26	-2.4
1,285,834	+		GFF1257	0.29	-0.2
1,285,849	+		GFF1257	0.31	-0.9
1,285,849	+		GFF1257	0.31	-0.3
1,285,849	+		GFF1257	0.31	-0.5
1,285,849	+		GFF1257	0.31	-0.4
1,285,854	+		GFF1257	0.31	-0.7
1,285,857	-		GFF1257	0.32	+1.3
1,285,857	-		GFF1257	0.32	+1.6
1,285,857	-		GFF1257	0.32	-0.6
1,285,857	-		GFF1257	0.32	+1.6
1,285,857	-		GFF1257	0.32	-0.7
1,285,862	-		GFF1257	0.32	+0.5
1,285,862	-		GFF1257	0.32	-0.6
1,285,893	-		GFF1257	0.36	+0.4
1,285,895	+		GFF1257	0.37	-0.7
1,285,895	+		GFF1257	0.37	+0.7
1,285,903	-		GFF1257	0.38	-2.1
1,285,903	-		GFF1257	0.38	+0.1
1,285,923	+		GFF1257	0.40	-0.3
1,285,923	+		GFF1257	0.40	-0.3
1,285,931	+		GFF1257	0.41	+0.2
1,285,931	-		GFF1257	0.41	+0.4
1,285,933	+		GFF1257	0.41	-0.3
1,285,938	+		GFF1257	0.42	+1.3
1,285,941	-		GFF1257	0.42	-0.9
1,285,956	+		GFF1257	0.44	+1.1
1,285,966	+		GFF1257	0.45	+0.1
1,285,966	+		GFF1257	0.45	+0.3
1,285,969	-		GFF1257	0.46	+0.5
1,285,971	+		GFF1257	0.46	-1.3
1,285,971	+		GFF1257	0.46	+0.2
1,285,978	+		GFF1257	0.47	-0.3
1,285,982	+		GFF1257	0.47	-2.1
1,285,982	+		GFF1257	0.47	+0.1
1,285,990	-		GFF1257	0.48	-0.9
1,285,990	-		GFF1257	0.48	-0.7
1,286,010	+		GFF1257	0.51	-0.6
1,286,018	-		GFF1257	0.52	-1.1
1,286,038	+		GFF1257	0.54	+0.8
1,286,063	+		GFF1257	0.57	+0.2
1,286,143	-		GFF1257	0.67	-1.4
1,286,145	+		GFF1257	0.68	-1.8
1,286,145	+		GFF1257	0.68	-0.3
1,286,145	+		GFF1257	0.68	-0.2
1,286,153	-		GFF1257	0.69	-0.1
1,286,178	+		GFF1257	0.72	-2.6
1,286,180	+		GFF1257	0.72	-1.7
1,286,180	+		GFF1257	0.72	+0.2
1,286,186	-		GFF1257	0.73	-1.4
1,286,188	-		GFF1257	0.73	-1.0
1,286,205	+		GFF1257	0.75	-0.2
1,286,205	+		GFF1257	0.75	+0.3
1,286,205	+		GFF1257	0.75	+0.3
1,286,205	+		GFF1257	0.75	+0.4
1,286,205	+		GFF1257	0.75	-0.6
1,286,205	+		GFF1257	0.75	-0.6
1,286,213	-		GFF1257	0.76	+0.2
1,286,213	-		GFF1257	0.76	-0.7
1,286,213	-		GFF1257	0.76	+0.2
1,286,249	-		GFF1257	0.80	-0.3
1,286,279	+		GFF1257	0.84	-0.4
1,286,287	-		GFF1257	0.85	-0.0
1,286,296	+		GFF1257	0.86	-0.1
1,286,296	+		GFF1257	0.86	+0.4
1,286,296	+		GFF1257	0.86	+1.9
1,286,296	+		GFF1257	0.86	-1.6
1,286,304	-		GFF1257	0.87	-0.4
1,286,304	-		GFF1257	0.87	-2.2
1,286,304	-		GFF1257	0.87	+2.0
1,286,313	+		GFF1257	0.88	+0.2
1,286,313	-		GFF1257	0.88	-0.7
1,286,335	+				+1.0
1,286,335	+				-0.4
1,286,335	-				+0.1
1,286,343	-				+0.1
1,286,380	-				-0.1
1,286,417	+				-1.9
1,286,417	+				-0.2
1,286,417	+				-0.9
1,286,424	+				+1.3
1,286,425	-				-1.2
1,286,429	+				-1.7
1,286,429	+				+0.4
1,286,432	-				+1.5
1,286,541	-		GFF1258	0.11	+0.6
1,286,562	+		GFF1258	0.13	-0.1
1,286,562	+		GFF1258	0.13	+1.1
1,286,570	-		GFF1258	0.13	-2.5
1,286,589	+		GFF1258	0.15	+0.7
1,286,594	+		GFF1258	0.15	-0.9
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