Strain Fitness in Sphingobium sp. HT1-2 around GFF1135

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,138,376	+		GFF1133	0.50	-1.2
1,138,376	+		GFF1133	0.50	-1.6
1,138,376	+		GFF1133	0.50	+0.8
1,138,376	+		GFF1133	0.50	-0.5
1,138,378	+		GFF1133	0.50	+0.3
1,138,378	+		GFF1133	0.50	-2.4
1,138,378	+		GFF1133	0.50	-0.1
1,138,378	+		GFF1133	0.50	-0.1
1,138,378	+		GFF1133	0.50	-0.1
1,138,378	+		GFF1133	0.50	+0.4
1,138,384	-		GFF1133	0.50	+1.1
1,138,384	-		GFF1133	0.50	-1.8
1,138,384	-		GFF1133	0.50	-0.2
1,138,384	-		GFF1133	0.50	-1.8
1,138,384	-		GFF1133	0.50	-1.2
1,138,384	-		GFF1133	0.50	+0.3
1,138,384	-		GFF1133	0.50	+0.4
1,138,386	-		GFF1133	0.51	-1.7
1,138,386	-		GFF1133	0.51	-0.6
1,138,390	+		GFF1133	0.51	-0.8
1,138,392	-		GFF1133	0.51	-0.0
1,138,401	-		GFF1133	0.52	+0.4
1,138,415	+		GFF1133	0.53	-1.1
1,138,421	+		GFF1133	0.54	-0.2
1,138,423	-		GFF1133	0.54	-0.8
1,138,423	-		GFF1133	0.54	-0.2
1,138,423	-		GFF1133	0.54	-2.0
1,138,423	-		GFF1133	0.54	-0.8
1,138,429	-		GFF1133	0.54	+1.0
1,138,440	-		GFF1133	0.55	-1.2
1,138,496	-		GFF1133	0.60	+0.9
1,138,496	-		GFF1133	0.60	+0.1
1,138,498	+		GFF1133	0.61	-0.9
1,138,511	+		GFF1133	0.62	+0.8
1,138,520	-		GFF1133	0.63	+0.2
1,138,535	+		GFF1133	0.64	-0.2
1,138,540	+		GFF1133	0.64	-1.2
1,138,543	-		GFF1133	0.65	-0.3
1,138,543	-		GFF1133	0.65	+0.6
1,138,543	-		GFF1133	0.65	-0.1
1,138,548	+		GFF1133	0.65	+0.9
1,138,548	+		GFF1133	0.65	+0.1
1,138,548	+		GFF1133	0.65	-1.1
1,138,553	+		GFF1133	0.66	-1.6
1,138,556	-		GFF1133	0.66	-0.3
1,138,556	-		GFF1133	0.66	-1.4
1,138,556	-		GFF1133	0.66	-0.6
1,138,556	-		GFF1133	0.66	-1.1
1,138,571	+		GFF1133	0.67	+1.0
1,138,579	-		GFF1133	0.68	+0.2
1,138,580	+		GFF1133	0.68	-1.0
1,138,696	+		GFF1133	0.78	-1.9
1,138,733	+		GFF1133	0.82	-1.3
1,138,738	+		GFF1133	0.82	-1.6
1,138,740	+		GFF1133	0.82	+0.2
1,138,746	-		GFF1133	0.83	+1.2
1,138,764	+		GFF1133	0.84	-1.9
1,138,772	-		GFF1133	0.85	-1.3
1,138,773	+		GFF1133	0.85	+1.4
1,138,773	+		GFF1133	0.85	-1.2
1,138,773	+		GFF1133	0.85	-1.6
1,138,773	+		GFF1133	0.85	+0.4
1,138,778	+		GFF1133	0.86	-0.5
1,138,781	-		GFF1133	0.86	-1.6
1,138,781	-		GFF1133	0.86	-0.9
1,138,793	+		GFF1133	0.87	+0.7
1,138,798	+		GFF1133	0.87	-0.2
1,138,801	-		GFF1133	0.88	-1.2
1,138,801	-		GFF1133	0.88	-2.0
1,138,806	+		GFF1133	0.88	+0.3
1,138,806	-		GFF1133	0.88	-1.9
1,138,809	+		GFF1133	0.88	+0.9
1,138,817	-		GFF1133	0.89	-1.0
1,138,835	+				+0.9
1,138,835	+				-1.9
1,138,835	+				+0.8
1,138,835	+				-0.7
1,138,835	+				-1.8
1,138,835	+				+0.8
1,138,835	+				+0.1
1,138,835	+				-1.1
1,138,843	-				+0.4
1,138,843	-				+0.8
1,138,843	-				+0.1
1,138,857	-				-0.2
1,138,905	+				+0.6
1,138,905	+				-2.1
1,138,905	+				-0.9
1,138,910	+				-1.0
1,138,910	+				+0.5
1,138,912	+				-0.8
1,138,913	-				-0.4
1,138,924	+				-1.9
1,138,932	+				-0.1
1,138,932	+				-1.4
1,138,934	+				+0.4
1,138,984	+				+1.7
1,139,071	+				-1.2
1,139,127	-				+0.8
1,139,161	-				-1.6
1,139,163	+				+0.6
1,139,169	-		GFF1134	0.13	-0.0
1,139,182	+		GFF1134	0.23	+1.0
1,139,215	+		GFF1134	0.46	+0.1
1,139,215	+		GFF1134	0.46	-0.2
1,139,215	+		GFF1134	0.46	+0.1
1,139,215	+		GFF1134	0.46	-0.2
1,139,219	-		GFF1134	0.49	+1.1
1,139,223	-		GFF1134	0.52	+0.1
1,139,223	-		GFF1134	0.52	+0.2
1,139,229	+		GFF1134	0.56	+1.8
1,139,229	+		GFF1134	0.56	-1.5
1,139,229	-		GFF1134	0.56	-0.6
1,139,235	+		GFF1134	0.60	+0.6
1,139,237	-		GFF1134	0.62	-0.8
1,139,237	-		GFF1134	0.62	-0.2
1,139,247	-		GFF1134	0.69	-1.8
1,139,281	+				-0.2
1,139,301	-				+0.4
1,139,301	-				+1.2
1,139,303	-				+0.1
1,139,303	-				+0.2
1,139,317	+				-0.1
1,139,323	-				-0.5
1,139,342	+				-0.1
1,139,348	-				-0.9
1,139,348	-				+0.6
1,139,363	-				+0.9
1,139,378	+				+0.6
1,139,402	+		GFF1135	0.13	+0.5
1,139,402	+		GFF1135	0.13	+1.6
1,139,402	+		GFF1135	0.13	-0.9
1,139,410	-		GFF1135	0.16	-0.1
1,139,431	+		GFF1135	0.23	-1.7
1,139,441	+		GFF1135	0.26	+1.0
1,139,449	-		GFF1135	0.29	+1.8
1,139,450	+		GFF1135	0.29	+0.0
1,139,452	-		GFF1135	0.30	-0.1
1,139,516	+		GFF1135	0.51	+0.5
1,139,516	+		GFF1135	0.51	+0.5
1,139,516	+		GFF1135	0.51	-2.4
1,139,516	+		GFF1135	0.51	+0.1
1,139,518	+		GFF1135	0.52	+1.3
1,139,518	+		GFF1135	0.52	+1.7
1,139,520	+		GFF1135	0.52	+0.3
1,139,524	-		GFF1135	0.54	-1.5
1,139,524	-		GFF1135	0.54	-0.5
1,139,524	-		GFF1135	0.54	-0.4
1,139,534	-		GFF1135	0.57	-1.7
1,139,542	+		GFF1135	0.60	-0.3
1,139,545	-		GFF1135	0.61	-0.4
1,139,545	-		GFF1135	0.61	+0.1
1,139,545	-		GFF1135	0.61	-1.7
1,139,547	+		GFF1135	0.61	-0.2
1,139,547	+		GFF1135	0.61	-0.2
1,139,550	-		GFF1135	0.62	-0.1
1,139,550	-		GFF1135	0.62	+1.1
1,139,550	-		GFF1135	0.62	+0.5
1,139,550	-		GFF1135	0.62	-0.7
1,139,555	-		GFF1135	0.64	-0.7
1,139,559	+		GFF1135	0.65	-2.0
1,139,571	+		GFF1135	0.69	+0.3
1,139,571	+		GFF1135	0.69	-0.6
1,139,571	+		GFF1135	0.69	-0.1
1,139,571	+		GFF1135	0.69	-0.1
1,139,571	+		GFF1135	0.69	-0.5
1,139,576	+		GFF1135	0.71	-1.7
1,139,576	+		GFF1135	0.71	-1.4
1,139,579	-		GFF1135	0.72	-0.2
1,139,579	-		GFF1135	0.72	-1.0
1,139,589	-		GFF1135	0.75	-0.2
1,139,591	+		GFF1135	0.76	-3.0
1,139,591	+		GFF1135	0.76	-1.2
1,139,591	+		GFF1135	0.76	-1.0
1,139,591	+		GFF1135	0.76	+0.4
1,139,591	+		GFF1135	0.76	+0.5
1,139,591	+		GFF1135	0.76	-0.8
1,139,591	+		GFF1135	0.76	+0.4
1,139,591	+		GFF1135	0.76	-0.1
1,139,591	+		GFF1135	0.76	-0.8
1,139,591	+		GFF1135	0.76	-1.1
1,139,591	+		GFF1135	0.76	-0.7
1,139,591	+		GFF1135	0.76	+0.3
1,139,591	+		GFF1135	0.76	-0.1
1,139,591	+		GFF1135	0.76	+0.2
1,139,591	+		GFF1135	0.76	-0.6
1,139,591	+		GFF1135	0.76	+0.1
1,139,591	+		GFF1135	0.76	+0.1
1,139,599	-		GFF1135	0.79	-0.3
1,139,599	-		GFF1135	0.79	-0.1
1,139,599	-		GFF1135	0.79	-0.3
1,139,599	-		GFF1135	0.79	-0.2
1,139,599	-		GFF1135	0.79	+0.3
1,139,599	-		GFF1135	0.79	-1.3
1,139,599	-		GFF1135	0.79	-0.1
1,139,599	-		GFF1135	0.79	-1.0
1,139,599	-		GFF1135	0.79	-0.7
1,139,599	-		GFF1135	0.79	-0.0
1,139,599	-		GFF1135	0.79	+1.4
1,139,599	-		GFF1135	0.79	+0.2
1,139,599	-		GFF1135	0.79	-1.1
1,139,599	-		GFF1135	0.79	-1.6
1,139,599	-		GFF1135	0.79	+0.6
1,139,599	-		GFF1135	0.79	+0.1
1,139,599	-		GFF1135	0.79	-1.3
1,139,599	-		GFF1135	0.79	-0.2
1,139,599	-		GFF1135	0.79	-0.9
1,139,599	-		GFF1135	0.79	+1.0
1,139,599	-		GFF1135	0.79	+0.1
1,139,599	-		GFF1135	0.79	-2.4
1,139,599	-		GFF1135	0.79	+0.6
1,139,599	-		GFF1135	0.79	-1.2
1,139,599	-		GFF1135	0.79	-1.6
1,139,617	+		GFF1135	0.85	-0.1
1,139,627	+		GFF1135	0.88	-0.0
1,139,627	+		GFF1135	0.88	-0.7
1,139,627	+		GFF1135	0.88	-0.1
1,139,627	+		GFF1135	0.88	-0.9
1,139,635	-				-0.3
1,139,635	-				-1.2
1,139,666	+				-0.5
1,139,672	+				+1.7
1,139,676	-				+0.0
1,139,681	+				+0.4
1,139,681	+				+0.3
1,139,689	-				+1.1
1,139,693	+				+1.2
1,139,711	+				+1.3
1,139,717	+				+1.3
1,139,717	+				-0.5
1,139,725	-				+1.6
1,139,725	-				-0.4
1,139,731	+				-2.0
1,139,731	+				-1.6
1,139,731	+				-0.4
1,139,731	+				+0.8
1,139,731	+				+1.6
1,139,736	+				-1.2
1,139,736	+				-1.0
1,139,739	-				-0.1
1,139,744	-				+0.2
1,139,745	-				-0.5
1,139,745	-				+0.1
1,139,752	+		GFF1136	0.10	+0.4
1,139,755	+		GFF1136	0.11	+0.6
1,139,755	+		GFF1136	0.11	-1.5
1,139,755	-		GFF1136	0.11	-0.8
1,139,755	-		GFF1136	0.11	+0.2
1,139,760	-		GFF1136	0.12	-2.2
1,139,760	-		GFF1136	0.12	-0.3
1,139,773	-		GFF1136	0.16	-2.2
1,139,785	+		GFF1136	0.19	-0.2
1,139,785	+		GFF1136	0.19	-0.5
1,139,785	+		GFF1136	0.19	-0.3
1,139,785	+		GFF1136	0.19	+0.1
1,139,790	+		GFF1136	0.20	-0.5
1,139,790	+		GFF1136	0.20	-1.9
1,139,793	-		GFF1136	0.21	+1.4
1,139,793	-		GFF1136	0.21	-1.4
1,139,793	-		GFF1136	0.21	-0.3
1,139,793	-		GFF1136	0.21	-0.3
1,139,793	-		GFF1136	0.21	+0.7
1,139,793	-		GFF1136	0.21	+1.0
1,139,793	-		GFF1136	0.21	+0.3
1,139,793	-		GFF1136	0.21	-1.8
1,139,795	+		GFF1136	0.22	-0.2
1,139,798	-		GFF1136	0.23	-0.5
1,139,798	-		GFF1136	0.23	+0.7
1,139,798	-		GFF1136	0.23	+0.5
1,139,817	-		GFF1136	0.28	+0.1
1,139,817	-		GFF1136	0.28	+0.3
1,139,817	-		GFF1136	0.28	+0.2
1,139,817	-		GFF1136	0.28	-0.2
1,139,821	-		GFF1136	0.29	+0.8
1,139,832	+		GFF1136	0.32	+0.3
1,139,873	+		GFF1136	0.43	-0.1
1,139,873	+		GFF1136	0.43	-0.3
1,139,881	-		GFF1136	0.45	+0.6
1,139,887	-		GFF1136	0.47	+0.4
1,139,894	+		GFF1136	0.49	-0.8
1,139,913	-		GFF1136	0.54	-2.0
1,139,917	-		GFF1136	0.55	-0.0
1,139,937	+		GFF1136	0.61	-1.3
1,139,937	+		GFF1136	0.61	-0.1
1,139,938	+		GFF1136	0.61	+1.3
1,139,938	+		GFF1136	0.61	+1.0
1,139,938	+		GFF1136	0.61	+1.4
1,139,938	+		GFF1136	0.61	-2.1
1,139,940	+		GFF1136	0.61	-1.3
1,139,945	-		GFF1136	0.63	+1.1
1,139,945	-		GFF1136	0.63	-1.5
1,139,945	-		GFF1136	0.63	-1.1
1,139,945	-		GFF1136	0.63	+0.6
1,139,945	-		GFF1136	0.63	-1.4
1,139,945	-		GFF1136	0.63	+0.9
1,139,945	-		GFF1136	0.63	-0.1
1,139,945	-		GFF1136	0.63	-0.8
1,139,945	-		GFF1136	0.63	+0.1
1,139,946	-		GFF1136	0.63	-0.8
1,139,946	-		GFF1136	0.63	+0.3
1,139,947	+		GFF1136	0.63	+0.9
1,139,955	-		GFF1136	0.66	+1.2
1,139,955	-		GFF1136	0.66	+0.9
1,139,977	-		GFF1136	0.72	-0.7
1,139,977	-		GFF1136	0.72	+0.1
1,139,978	-		GFF1136	0.72	-1.7
1,139,992	-		GFF1136	0.76	-0.1
1,139,995	+		GFF1136	0.77	+0.4
1,140,021	+		GFF1136	0.84	-0.6
1,140,021	+		GFF1136	0.84	-0.1
1,140,021	+		GFF1136	0.84	+0.3
1,140,034	-		GFF1136	0.87	-1.9
1,140,044	-				+0.1
1,140,045	-				-1.1
1,140,063	+				+0.8
1,140,093	+				-1.6
1,140,097	+				-0.4
1,140,097	+				-0.1
1,140,124	+				-1.7
1,140,124	+				-1.2
1,140,132	-				+0.4
1,140,132	-				+0.1
1,140,132	-				+0.2
1,140,158	-				+0.0
1,140,161	+				+1.3
1,140,161	+				+0.4
1,140,169	-				-1.4
1,140,169	-				+0.2
1,140,179	+				+0.8
1,140,212	+				+0.3
1,140,220	-				+1.1
1,140,229	-				-2.2
1,140,229	-				-0.5
1,140,229	-				-2.0
1,140,238	+				+0.5
1,140,251	-				+0.3
1,140,254	+				-1.7
1,140,257	-				+0.2
1,140,309	+		GFF1137	0.12	-0.1
1,140,309	+		GFF1137	0.12	+0.6
1,140,310	-		GFF1137	0.12	+0.3
1,140,319	-		GFF1137	0.13	+0.8
1,140,321	+		GFF1137	0.13	-3.0
1,140,321	+		GFF1137	0.13	+0.1
1,140,321	+		GFF1137	0.13	-1.8
1,140,329	-		GFF1137	0.13	+0.1
1,140,331	+		GFF1137	0.13	-0.5
1,140,331	+		GFF1137	0.13	-0.2
1,140,339	-		GFF1137	0.14	-1.7
1,140,339	-		GFF1137	0.14	+0.1
1,140,339	-		GFF1137	0.14	+0.6
1,140,340	-		GFF1137	0.14	+0.1
1,140,358	+		GFF1137	0.15	-1.1
1,140,358	+		GFF1137	0.15	+0.0
1,140,366	-		GFF1137	0.15	-2.4
1,140,366	-		GFF1137	0.15	-0.8
1,140,371	+		GFF1137	0.16	-1.2
1,140,375	-		GFF1137	0.16	-1.4
1,140,375	-		GFF1137	0.16	-1.0
1,140,379	-		GFF1137	0.16	+0.6
1,140,380	-		GFF1137	0.16	+0.1
1,140,383	+		GFF1137	0.16	-0.7
1,140,385	-		GFF1137	0.16	+0.4
1,140,385	-		GFF1137	0.16	-0.1
1,140,426	+		GFF1137	0.18	-1.2
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