Strain Fitness in Sphingobium sp. HT1-2 around GFF1127

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,130,076	+				+0.8
1,130,076	+				-1.2
1,130,076	+				+0.2
1,130,076	+				-0.2
1,130,076	+				+0.8
1,130,076	+				+1.0
1,130,079	-				+0.2
1,130,082	+				-0.8
1,130,084	-				+0.3
1,130,084	-				-1.5
1,130,084	-				-0.5
1,130,084	-				-0.6
1,130,084	-				+0.6
1,130,084	-				+0.1
1,130,084	-				-0.1
1,130,086	+				-0.5
1,130,090	-				-0.2
1,130,090	-				-0.4
1,130,092	+				-0.4
1,130,099	+				-0.1
1,130,099	-				-0.7
1,130,100	+				+0.8
1,130,117	-				-0.0
1,130,156	-				-2.0
1,130,159	-				-0.6
1,130,179	-				+1.0
1,130,189	+				-0.5
1,130,206	+		GFF1126	0.10	+0.7
1,130,211	+		GFF1126	0.11	-1.8
1,130,211	+		GFF1126	0.11	-1.5
1,130,211	+		GFF1126	0.11	-0.2
1,130,211	+		GFF1126	0.11	+0.6
1,130,214	-		GFF1126	0.11	-2.0
1,130,219	-		GFF1126	0.12	-0.1
1,130,232	+		GFF1126	0.13	+1.1
1,130,240	+		GFF1126	0.14	-2.7
1,130,248	-		GFF1126	0.14	+0.2
1,130,248	-		GFF1126	0.14	+0.6
1,130,288	+		GFF1126	0.18	+0.5
1,130,288	+		GFF1126	0.18	-1.2
1,130,289	+		GFF1126	0.18	+0.8
1,130,290	-		GFF1126	0.19	-0.0
1,130,290	-		GFF1126	0.19	-0.7
1,130,294	-		GFF1126	0.19	+0.1
1,130,294	-		GFF1126	0.19	-0.5
1,130,346	-		GFF1126	0.24	+0.6
1,130,365	+		GFF1126	0.26	+0.6
1,130,365	+		GFF1126	0.26	-1.7
1,130,373	-		GFF1126	0.27	+0.2
1,130,373	-		GFF1126	0.27	-0.4
1,130,375	+		GFF1126	0.27	+1.4
1,130,375	+		GFF1126	0.27	+1.4
1,130,404	+		GFF1126	0.30	+0.3
1,130,409	+		GFF1126	0.30	+0.3
1,130,411	+		GFF1126	0.30	-0.1
1,130,416	+		GFF1126	0.31	-0.4
1,130,421	+		GFF1126	0.31	-0.5
1,130,421	+		GFF1126	0.31	-1.4
1,130,427	+		GFF1126	0.32	-0.2
1,130,427	+		GFF1126	0.32	-0.2
1,130,427	+		GFF1126	0.32	-0.4
1,130,427	+		GFF1126	0.32	-0.3
1,130,427	+		GFF1126	0.32	-0.3
1,130,427	+		GFF1126	0.32	+0.5
1,130,427	+		GFF1126	0.32	-0.9
1,130,427	+		GFF1126	0.32	-0.6
1,130,427	+		GFF1126	0.32	-1.4
1,130,427	+		GFF1126	0.32	-1.5
1,130,427	+		GFF1126	0.32	+0.2
1,130,427	+		GFF1126	0.32	-0.7
1,130,427	+		GFF1126	0.32	+0.3
1,130,427	+		GFF1126	0.32	+0.1
1,130,427	+		GFF1126	0.32	-0.2
1,130,427	+		GFF1126	0.32	+0.5
1,130,427	+		GFF1126	0.32	+0.5
1,130,429	-		GFF1126	0.32	+0.7
1,130,429	-		GFF1126	0.32	+1.1
1,130,434	+		GFF1126	0.33	-0.4
1,130,434	+		GFF1126	0.33	-0.9
1,130,434	+		GFF1126	0.33	-1.7
1,130,435	-		GFF1126	0.33	-2.1
1,130,435	-		GFF1126	0.33	+0.5
1,130,435	-		GFF1126	0.33	-1.5
1,130,435	-		GFF1126	0.33	-1.4
1,130,435	-		GFF1126	0.33	+0.3
1,130,435	-		GFF1126	0.33	+0.3
1,130,435	-		GFF1126	0.33	-0.6
1,130,435	-		GFF1126	0.33	-0.0
1,130,435	-		GFF1126	0.33	+0.5
1,130,435	-		GFF1126	0.33	-0.3
1,130,435	-		GFF1126	0.33	-0.8
1,130,435	-		GFF1126	0.33	-0.3
1,130,435	-		GFF1126	0.33	-1.2
1,130,439	+		GFF1126	0.33	+0.6
1,130,441	-		GFF1126	0.33	+0.4
1,130,442	-		GFF1126	0.34	-2.1
1,130,478	+		GFF1126	0.37	+0.1
1,130,498	-		GFF1126	0.39	+0.0
1,130,498	-		GFF1126	0.39	+0.6
1,130,498	-		GFF1126	0.39	-2.0
1,130,499	+		GFF1126	0.39	-0.4
1,130,528	+		GFF1126	0.42	+0.3
1,130,528	+		GFF1126	0.42	-1.6
1,130,528	+		GFF1126	0.42	+1.5
1,130,536	-		GFF1126	0.43	-2.0
1,130,536	-		GFF1126	0.43	-0.6
1,130,560	+		GFF1126	0.45	+0.6
1,130,560	+		GFF1126	0.45	+0.2
1,130,585	+		GFF1126	0.48	-2.5
1,130,585	+		GFF1126	0.48	+0.7
1,130,590	+		GFF1126	0.48	-1.2
1,130,593	-		GFF1126	0.48	-0.2
1,130,593	-		GFF1126	0.48	-1.2
1,130,593	-		GFF1126	0.48	+0.5
1,130,593	-		GFF1126	0.48	+0.9
1,130,630	+		GFF1126	0.52	-1.2
1,130,635	+		GFF1126	0.53	-0.7
1,130,638	-		GFF1126	0.53	-0.7
1,130,638	-		GFF1126	0.53	-0.2
1,130,640	+		GFF1126	0.53	-0.1
1,130,640	+		GFF1126	0.53	-0.5
1,130,645	+		GFF1126	0.53	+0.5
1,130,674	-		GFF1126	0.56	+0.8
1,130,675	+		GFF1126	0.56	+0.6
1,130,676	+		GFF1126	0.57	+1.0
1,130,684	+		GFF1126	0.57	+1.3
1,130,719	-		GFF1126	0.61	-1.6
1,130,752	+		GFF1126	0.64	+0.2
1,130,752	+		GFF1126	0.64	-0.4
1,130,754	+		GFF1126	0.64	-0.8
1,130,754	+		GFF1126	0.64	+0.5
1,130,754	+		GFF1126	0.64	+0.9
1,130,754	+		GFF1126	0.64	-0.2
1,130,754	+		GFF1126	0.64	+0.3
1,130,754	+		GFF1126	0.64	+0.6
1,130,760	-		GFF1126	0.65	-2.0
1,130,760	-		GFF1126	0.65	-0.8
1,130,762	+		GFF1126	0.65	-1.6
1,130,762	+		GFF1126	0.65	+0.8
1,130,762	-		GFF1126	0.65	+1.6
1,130,764	+		GFF1126	0.65	-1.7
1,130,772	-		GFF1126	0.66	-0.0
1,130,797	+		GFF1126	0.68	-0.8
1,130,798	-		GFF1126	0.69	-0.2
1,130,810	-		GFF1126	0.70	+0.3
1,130,817	+		GFF1126	0.70	+0.3
1,130,817	+		GFF1126	0.70	-1.2
1,130,825	-		GFF1126	0.71	-1.0
1,130,825	-		GFF1126	0.71	-1.1
1,130,851	-		GFF1126	0.74	-0.1
1,130,857	-		GFF1126	0.74	-0.4
1,130,861	+		GFF1126	0.75	+0.4
1,130,861	+		GFF1126	0.75	-0.8
1,130,861	+		GFF1126	0.75	-0.9
1,130,861	+		GFF1126	0.75	+1.0
1,130,861	+		GFF1126	0.75	-0.6
1,130,861	+		GFF1126	0.75	-0.4
1,130,869	+		GFF1126	0.76	-0.4
1,130,869	-		GFF1126	0.76	-0.4
1,130,869	-		GFF1126	0.76	-1.4
1,130,869	-		GFF1126	0.76	-3.0
1,130,869	-		GFF1126	0.76	+0.0
1,130,869	-		GFF1126	0.76	+1.9
1,130,877	-		GFF1126	0.76	-0.5
1,130,878	+		GFF1126	0.76	+0.0
1,130,878	+		GFF1126	0.76	-0.0
1,130,925	+		GFF1126	0.81	+1.2
1,130,925	+		GFF1126	0.81	-2.4
1,130,933	-		GFF1126	0.82	-1.4
1,130,936	+		GFF1126	0.82	+1.0
1,130,945	-		GFF1126	0.83	+0.5
1,130,969	-		GFF1126	0.85	-0.2
1,130,969	-		GFF1126	0.85	-0.5
1,130,971	+		GFF1126	0.86	+0.3
1,130,971	+		GFF1126	0.86	-1.0
1,130,979	-		GFF1126	0.86	+0.3
1,130,983	+		GFF1126	0.87	-0.4
1,131,002	+		GFF1126	0.89	+0.6
1,131,002	+		GFF1126	0.89	-2.0
1,131,010	-		GFF1126	0.89	-1.5
1,131,010	-		GFF1126	0.89	-0.0
1,131,010	-		GFF1126	0.89	-1.5
1,131,030	+				+0.2
1,131,042	-				+0.6
1,131,057	-				+0.1
1,131,067	-				-0.0
1,131,068	+				-0.4
1,131,068	+				+0.2
1,131,068	+				-0.2
1,131,068	+				-2.5
1,131,068	+				+0.0
1,131,068	+				-1.6
1,131,068	+				+0.6
1,131,078	+				-0.4
1,131,078	+				+0.9
1,131,081	-				-0.1
1,131,081	-				-0.2
1,131,081	-				-2.1
1,131,086	-				+0.4
1,131,086	-				-0.6
1,131,086	-				-1.5
1,131,086	-				+0.2
1,131,156	+				-0.2
1,131,164	-				+0.2
1,131,164	-				-0.2
1,131,173	+				+1.2
1,131,186	+		GFF1127	0.11	+0.1
1,131,186	+		GFF1127	0.11	-0.4
1,131,206	+		GFF1127	0.13	-1.7
1,131,239	+		GFF1127	0.16	+0.1
1,131,247	-		GFF1127	0.17	+0.4
1,131,255	+		GFF1127	0.17	+0.5
1,131,255	+		GFF1127	0.17	-2.0
1,131,261	+		GFF1127	0.18	-1.6
1,131,263	-		GFF1127	0.18	-0.2
1,131,264	+		GFF1127	0.18	-1.5
1,131,280	-		GFF1127	0.20	+1.1
1,131,293	+		GFF1127	0.21	+0.1
1,131,293	-		GFF1127	0.21	+0.1
1,131,295	+		GFF1127	0.21	-1.6
1,131,333	+		GFF1127	0.25	+0.1
1,131,333	+		GFF1127	0.25	-0.5
1,131,346	-		GFF1127	0.26	+0.7
1,131,347	+		GFF1127	0.26	+0.2
1,131,360	+		GFF1127	0.28	-0.7
1,131,361	-		GFF1127	0.28	+0.7
1,131,373	+		GFF1127	0.29	+0.9
1,131,378	+		GFF1127	0.29	-0.2
1,131,381	+		GFF1127	0.30	-1.0
1,131,393	+		GFF1127	0.31	+1.0
1,131,398	+		GFF1127	0.31	+0.4
1,131,398	+		GFF1127	0.31	-1.0
1,131,401	-		GFF1127	0.32	+1.4
1,131,401	-		GFF1127	0.32	+0.3
1,131,406	-		GFF1127	0.32	+0.5
1,131,406	-		GFF1127	0.32	-1.7
1,131,406	-		GFF1127	0.32	-0.5
1,131,530	+		GFF1127	0.44	-0.2
1,131,530	+		GFF1127	0.44	+0.1
1,131,535	+		GFF1127	0.45	-2.2
1,131,538	-		GFF1127	0.45	+1.1
1,131,553	-		GFF1127	0.46	-1.5
1,131,553	-		GFF1127	0.46	-0.1
1,131,580	+		GFF1127	0.49	-1.0
1,131,588	-		GFF1127	0.50	-0.6
1,131,588	-		GFF1127	0.50	+0.1
1,131,588	-		GFF1127	0.50	+0.5
1,131,588	-		GFF1127	0.50	+0.7
1,131,641	-		GFF1127	0.55	-1.0
1,131,668	-		GFF1127	0.58	-1.4
1,131,670	+		GFF1127	0.58	-0.8
1,131,670	+		GFF1127	0.58	+0.1
1,131,670	+		GFF1127	0.58	+0.2
1,131,675	+		GFF1127	0.58	+0.5
1,131,677	+		GFF1127	0.59	+0.1
1,131,678	-		GFF1127	0.59	-0.4
1,131,678	-		GFF1127	0.59	+0.2
1,131,678	-		GFF1127	0.59	-1.5
1,131,678	-		GFF1127	0.59	-1.0
1,131,678	-		GFF1127	0.59	-1.7
1,131,678	-		GFF1127	0.59	+0.7
1,131,678	-		GFF1127	0.59	-1.4
1,131,683	-		GFF1127	0.59	+1.2
1,131,687	+		GFF1127	0.59	-0.4
1,131,687	+		GFF1127	0.59	-0.5
1,131,695	-		GFF1127	0.60	-0.8
1,131,695	-		GFF1127	0.60	-1.5
1,131,705	-		GFF1127	0.61	+0.1
1,131,705	-		GFF1127	0.61	-1.9
1,131,705	-		GFF1127	0.61	-1.0
1,131,737	-		GFF1127	0.64	+0.5
1,131,740	+		GFF1127	0.65	-1.4
1,131,740	+		GFF1127	0.65	+0.4
1,131,748	-		GFF1127	0.65	+0.9
1,131,748	-		GFF1127	0.65	+0.7
1,131,748	-		GFF1127	0.65	+0.5
1,131,781	+		GFF1127	0.69	-1.2
1,131,781	+		GFF1127	0.69	+0.4
1,131,789	-		GFF1127	0.69	-0.1
1,131,789	-		GFF1127	0.69	-1.6
1,131,789	-		GFF1127	0.69	-1.0
1,131,800	+		GFF1127	0.70	+1.5
1,131,800	+		GFF1127	0.70	+1.0
1,131,800	+		GFF1127	0.70	+0.3
1,131,800	-		GFF1127	0.70	-2.0
1,131,808	+		GFF1127	0.71	-1.2
1,131,808	-		GFF1127	0.71	-1.5
1,131,808	-		GFF1127	0.71	-0.5
1,131,854	+		GFF1127	0.76	+1.1
1,131,872	+		GFF1127	0.77	-1.7
1,131,873	-		GFF1127	0.78	-0.4
1,131,876	+		GFF1127	0.78	-1.2
1,131,885	-		GFF1127	0.79	-0.2
1,131,888	+		GFF1127	0.79	-0.2
1,131,888	+		GFF1127	0.79	-0.9
1,131,898	+		GFF1127	0.80	+1.7
1,131,906	-		GFF1127	0.81	-0.5
1,131,907	+		GFF1127	0.81	-0.1
1,131,912	+		GFF1127	0.81	+0.1
1,131,912	+		GFF1127	0.81	-1.4
1,131,912	+		GFF1127	0.81	-0.1
1,131,915	-		GFF1127	0.82	-0.9
1,131,920	-		GFF1127	0.82	-1.2
1,131,920	-		GFF1127	0.82	+0.3
1,131,920	-		GFF1127	0.82	-0.8
1,131,929	-		GFF1127	0.83	-1.2
1,132,004	+				-1.3
1,132,018	+				-2.6
1,132,032	+				-0.6
1,132,032	+				+0.6
1,132,039	+				-0.1
1,132,040	-				-0.1
1,132,040	-				-0.9
1,132,047	-				-0.2
1,132,065	+				-0.5
1,132,068	-				+0.8
1,132,100	+				-1.2
1,132,106	+				+0.1
1,132,106	+				-3.2
1,132,108	+				-0.0
1,132,114	-				-1.7
1,132,116	-				+0.0
1,132,219	+				-1.6
1,132,219	+				-1.4
1,132,222	+				+0.4
1,132,233	+				+1.9
1,132,329	+				-1.6
1,132,344	+				-0.9
1,132,396	-				-1.2
1,132,440	-		GFF1128	0.12	-0.9
1,132,440	-		GFF1128	0.12	-0.3
1,132,442	+		GFF1128	0.12	-0.5
1,132,442	+		GFF1128	0.12	-0.6
1,132,451	+		GFF1128	0.13	-0.4
1,132,451	+		GFF1128	0.13	-0.1
1,132,477	+		GFF1128	0.16	-1.6
1,132,477	+		GFF1128	0.16	-0.2
1,132,490	+		GFF1128	0.17	-0.2
1,132,495	+		GFF1128	0.17	-0.3
1,132,498	-		GFF1128	0.18	+1.2
1,132,508	+		GFF1128	0.19	+0.7
1,132,510	+		GFF1128	0.19	-0.0
1,132,530	+		GFF1128	0.21	-0.4
1,132,533	-		GFF1128	0.21	-1.8
1,132,571	+		GFF1128	0.25	-1.4
1,132,601	+		GFF1128	0.28	-0.8
1,132,606	+		GFF1128	0.28	-2.0
1,132,606	+		GFF1128	0.28	+0.7
1,132,614	-		GFF1128	0.29	-0.2
1,132,614	-		GFF1128	0.29	-1.2
1,132,624	+		GFF1128	0.30	+1.6
1,132,624	+		GFF1128	0.30	-0.4
1,132,624	+		GFF1128	0.30	-0.7
1,132,632	-		GFF1128	0.31	-1.5
1,132,647	+		GFF1128	0.32	+0.2
1,132,652	+		GFF1128	0.33	+0.5
1,132,655	-		GFF1128	0.33	+0.7
1,132,659	+		GFF1128	0.34	-1.1
1,132,659	+		GFF1128	0.34	+0.2
1,132,659	+		GFF1128	0.34	+0.6
1,132,667	-		GFF1128	0.34	-1.2
1,132,669	-		GFF1128	0.35	+0.4
1,132,673	-		GFF1128	0.35	-0.2
1,132,685	+		GFF1128	0.36	-1.2
1,132,692	-		GFF1128	0.37	+0.1
1,132,692	-		GFF1128	0.37	+0.5
1,132,693	-		GFF1128	0.37	-0.5
1,132,695	+		GFF1128	0.37	-0.6
1,132,720	+		GFF1128	0.39	-0.3
1,132,722	+		GFF1128	0.40	+1.3
1,132,722	+		GFF1128	0.40	+0.2
1,132,739	-		GFF1128	0.41	-1.5
1,132,739	-		GFF1128	0.41	-1.7
1,132,739	-		GFF1128	0.41	-0.1
1,132,765	-		GFF1128	0.44	+0.4
1,132,823	+		GFF1128	0.50	+0.2
1,132,833	+		GFF1128	0.51	+0.1
1,132,865	+		GFF1128	0.54	-0.7
1,132,889	-		GFF1128	0.56	+0.5
1,132,896	+		GFF1128	0.57	+0.4
1,132,898	-		GFF1128	0.57	+0.4
1,132,904	-		GFF1128	0.57	-0.4
1,132,915	+		GFF1128	0.59	+0.5
1,132,918	-		GFF1128	0.59	-0.0
1,132,918	-		GFF1128	0.59	+0.0
1,132,950	+		GFF1128	0.62	-0.4
1,132,950	+		GFF1128	0.62	-0.1
1,132,987	-		GFF1128	0.66	-1.1
1,132,987	-		GFF1128	0.66	-0.6
1,132,987	-		GFF1128	0.66	+0.0
1,132,987	-		GFF1128	0.66	+0.3
1,132,996	+		GFF1128	0.66	+0.5
1,133,042	+		GFF1128	0.71	+0.2
1,133,052	-		GFF1128	0.72	-1.6
1,133,059	+		GFF1128	0.73	-0.9
1,133,059	+		GFF1128	0.73	-2.3
1,133,059	+		GFF1128	0.73	+0.8
1,133,059	+		GFF1128	0.73	+0.5
1,133,071	+		GFF1128	0.74	-0.2
1,133,079	-		GFF1128	0.75	-0.3
1,133,085	-		GFF1128	0.75	-0.2