Strain Fitness in Sphingobium sp. HT1-2 around GFF1064

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,067,661	+				-0.0
1,067,690	+				-0.5
1,067,690	+				-0.4
1,067,690	+				-0.2
1,067,698	-				-1.6
1,067,698	-				-0.7
1,067,718	+				+0.1
1,067,719	+				+1.0
1,067,719	+				+0.2
1,067,719	+				+0.8
1,067,719	+				-0.8
1,067,719	+				-0.5
1,067,727	-				-1.9
1,067,727	-				-0.4
1,067,727	-				+0.4
1,067,727	-				-0.1
1,067,731	+				-1.8
1,067,732	+				-0.6
1,067,732	+				-1.9
1,067,732	+				+0.0
1,067,732	+				-0.1
1,067,732	+				+1.2
1,067,732	+				+0.2
1,067,732	+				+0.5
1,067,732	+				+0.2
1,067,732	+				-0.9
1,067,732	+				-0.8
1,067,737	+				-0.4
1,067,737	+				-0.5
1,067,740	-				-0.9
1,067,740	-				-2.5
1,067,740	-				-0.9
1,067,740	-				+0.4
1,067,740	-				+0.0
1,067,740	-				+0.5
1,067,740	-				-0.7
1,067,740	-				-0.5
1,067,740	-				+0.1
1,067,758	-				+0.8
1,067,763	-				-1.4
1,067,789	+				+1.1
1,067,818	-		GFF1063	0.11	-1.1
1,067,828	-		GFF1063	0.12	-0.3
1,067,830	+		GFF1063	0.12	-1.1
1,067,830	+		GFF1063	0.12	-0.8
1,067,836	-		GFF1063	0.13	-0.9
1,067,858	+		GFF1063	0.17	-1.4
1,067,858	+		GFF1063	0.17	+1.2
1,067,863	+		GFF1063	0.17	-0.8
1,067,871	+		GFF1063	0.19	-1.2
1,067,876	-		GFF1063	0.19	-1.0
1,067,890	+		GFF1063	0.21	-0.5
1,067,890	+		GFF1063	0.21	+0.6
1,067,897	+		GFF1063	0.22	+0.9
1,067,902	+		GFF1063	0.23	+0.6
1,067,911	-		GFF1063	0.25	+1.0
1,067,918	-		GFF1063	0.26	+0.2
1,067,941	+		GFF1063	0.29	-0.6
1,067,961	-		GFF1063	0.32	+0.4
1,067,966	-		GFF1063	0.33	-0.0
1,067,975	-		GFF1063	0.34	-0.4
1,067,988	+		GFF1063	0.36	+0.3
1,067,991	-		GFF1063	0.36	-0.1
1,067,991	-		GFF1063	0.36	-2.2
1,067,991	-		GFF1063	0.36	-0.6
1,067,991	-		GFF1063	0.36	-1.5
1,067,993	+		GFF1063	0.37	-2.7
1,067,996	-		GFF1063	0.37	-0.7
1,067,996	-		GFF1063	0.37	+0.8
1,067,996	-		GFF1063	0.37	+0.4
1,067,996	-		GFF1063	0.37	+0.6
1,067,998	+		GFF1063	0.38	-1.5
1,067,998	+		GFF1063	0.38	-2.1
1,068,001	-		GFF1063	0.38	+1.2
1,068,006	-		GFF1063	0.39	-0.6
1,068,006	-		GFF1063	0.39	-1.9
1,068,006	-		GFF1063	0.39	-1.9
1,068,018	+		GFF1063	0.41	+0.8
1,068,018	+		GFF1063	0.41	-0.2
1,068,018	+		GFF1063	0.41	-0.3
1,068,025	+		GFF1063	0.42	-0.8
1,068,026	-		GFF1063	0.42	-1.9
1,068,026	-		GFF1063	0.42	-0.4
1,068,038	+		GFF1063	0.43	-0.4
1,068,046	-		GFF1063	0.45	-0.4
1,068,089	+		GFF1063	0.51	-1.8
1,068,108	+		GFF1063	0.54	+0.3
1,068,108	+		GFF1063	0.54	+0.1
1,068,111	+		GFF1063	0.54	+0.6
1,068,121	+		GFF1063	0.56	+0.4
1,068,129	-		GFF1063	0.57	-0.6
1,068,133	+		GFF1063	0.58	-0.4
1,068,133	+		GFF1063	0.58	+0.2
1,068,136	-		GFF1063	0.58	-0.1
1,068,141	-		GFF1063	0.59	-1.0
1,068,141	-		GFF1063	0.59	+0.0
1,068,175	+		GFF1063	0.64	+0.8
1,068,185	+		GFF1063	0.65	-1.0
1,068,209	+		GFF1063	0.69	+0.3
1,068,231	+		GFF1063	0.72	-1.9
1,068,249	-		GFF1063	0.75	-1.0
1,068,291	+		GFF1063	0.81	+0.6
1,068,307	+		GFF1063	0.84	-0.0
1,068,307	+		GFF1063	0.84	+1.0
1,068,315	-		GFF1063	0.85	+0.8
1,068,358	+				-1.2
1,068,358	+				+0.2
1,068,358	+				+0.3
1,068,364	+				-0.5
1,068,365	+				-0.9
1,068,366	-				+1.8
1,068,366	-				-0.3
1,068,366	-				+1.0
1,068,366	-				+0.9
1,068,366	-				+0.2
1,068,370	+				+0.7
1,068,380	-				-2.0
1,068,382	+				-1.4
1,068,382	+				+1.6
1,068,382	+				+0.6
1,068,382	+				-0.6
1,068,382	+				+0.3
1,068,382	+				-1.7
1,068,382	+				-1.0
1,068,382	+				-0.9
1,068,382	+				-3.1
1,068,390	-				+0.8
1,068,390	-				+0.1
1,068,390	-				-0.8
1,068,395	-				+0.6
1,068,395	-				+1.5
1,068,395	-				+0.6
1,068,397	+				-2.0
1,068,414	+				-1.9
1,068,414	+				-0.2
1,068,414	+				+0.2
1,068,414	+				-0.4
1,068,414	+				-1.0
1,068,414	+				+0.4
1,068,414	+				-1.1
1,068,414	+				-0.1
1,068,414	+				-0.4
1,068,414	+				-1.2
1,068,414	+				-1.4
1,068,414	+				-0.3
1,068,414	+				-1.7
1,068,414	+				+0.2
1,068,414	+				-0.1
1,068,414	+				+0.5
1,068,414	+				+0.1
1,068,414	+				-0.6
1,068,422	-				+0.4
1,068,422	-				-0.4
1,068,422	-				+0.2
1,068,422	-				+0.7
1,068,422	-				-1.2
1,068,422	-				-1.1
1,068,422	-				+0.8
1,068,422	-				-0.4
1,068,422	-				-1.3
1,068,422	-				+0.1
1,068,422	-				-0.5
1,068,422	-				+0.2
1,068,422	-				-1.5
1,068,422	-				+0.2
1,068,422	-				+1.5
1,068,422	-				+0.3
1,068,422	-				-0.9
1,068,422	-				-1.5
1,068,424	+				-1.6
1,068,424	+				-1.1
1,068,424	+				+0.8
1,068,432	-				-0.1
1,068,432	-				-0.7
1,068,444	-				-1.9
1,068,476	+				-0.6
1,068,476	+				-1.0
1,068,476	+				-0.2
1,068,476	+				+1.1
1,068,479	-				+0.8
1,068,484	-				-1.2
1,068,484	-				-1.0
1,068,490	+				-1.9
1,068,491	+				+0.8
1,068,495	+				+0.0
1,068,495	+				-1.5
1,068,497	+				-1.9
1,068,499	-				+1.3
1,068,503	-				-1.5
1,068,524	+				-0.3
1,068,526	+				-1.4
1,068,531	+				-1.2
1,068,531	+				-1.5
1,068,533	-				-0.9
1,068,533	-				-0.5
1,068,539	-		GFF1064	0.11	-1.0
1,068,539	-		GFF1064	0.11	-1.4
1,068,539	-		GFF1064	0.11	-0.4
1,068,545	+		GFF1064	0.12	-2.9
1,068,563	-		GFF1064	0.14	+1.1
1,068,599	-		GFF1064	0.19	-2.0
1,068,647	-		GFF1064	0.25	-1.4
1,068,650	+		GFF1064	0.26	+1.5
1,068,672	+		GFF1064	0.29	-0.9
1,068,688	-		GFF1064	0.31	+1.1
1,068,737	-		GFF1064	0.38	-1.4
1,068,800	-		GFF1064	0.46	+0.1
1,068,805	-		GFF1064	0.47	+1.2
1,068,805	-		GFF1064	0.47	-0.9
1,068,839	-		GFF1064	0.52	-1.5
1,068,858	-		GFF1064	0.54	-2.9
1,068,863	-		GFF1064	0.55	+1.2
1,068,878	-		GFF1064	0.57	+0.1
1,068,895	+		GFF1064	0.59	-0.8
1,068,895	+		GFF1064	0.59	-1.7
1,068,895	+		GFF1064	0.59	+0.5
1,068,903	-		GFF1064	0.60	+2.1
1,068,903	-		GFF1064	0.60	+0.2
1,068,908	+		GFF1064	0.61	-1.8
1,068,908	+		GFF1064	0.61	-2.5
1,068,912	+		GFF1064	0.61	+1.4
1,068,955	-		GFF1064	0.67	-0.7
1,068,985	-		GFF1064	0.71	-0.5
1,068,986	+		GFF1064	0.72	-0.2
1,068,986	+		GFF1064	0.72	+0.3
1,068,986	+		GFF1064	0.72	+1.0
1,068,990	-		GFF1064	0.72	-1.9
1,068,994	-		GFF1064	0.73	-1.4
1,068,994	-		GFF1064	0.73	-1.2
1,069,017	+		GFF1064	0.76	-0.4
1,069,019	-		GFF1064	0.76	-0.8
1,069,019	-		GFF1064	0.76	-2.2
1,069,059	+		GFF1064	0.81	-0.9
1,069,059	+		GFF1064	0.81	+0.4
1,069,067	-		GFF1064	0.83	-1.7
1,069,067	-		GFF1064	0.83	-1.1
1,069,067	-		GFF1064	0.83	+0.2
1,069,067	-		GFF1064	0.83	+0.1
1,069,077	+		GFF1064	0.84	-1.7
1,069,082	+		GFF1064	0.85	-0.2
1,069,092	-		GFF1064	0.86	+0.1
1,069,095	-		GFF1064	0.86	+0.1
1,069,149	+				-1.7
1,069,157	-				-1.6
1,069,159	+				+0.5
1,069,159	+				-0.0
1,069,173	+				-0.6
1,069,175	-				-1.2
1,069,176	+				-0.9
1,069,181	-				+0.3
1,069,187	-				+0.6
1,069,188	-				-1.7
1,069,191	-				-1.2
1,069,198	+				-2.0
1,069,206	-				+0.6
1,069,214	-				+1.1
1,069,222	+				+0.6
1,069,229	+				+0.2
1,069,229	+				-0.0
1,069,229	+				-1.2
1,069,229	+				-0.4
1,069,229	+				+0.8
1,069,229	+				-0.5
1,069,229	+				-0.2
1,069,229	+				-0.9
1,069,230	-				-2.8
1,069,230	-				-0.2
1,069,230	-				-1.9
1,069,232	-				+1.4
1,069,237	-				-1.6
1,069,237	-				+1.2
1,069,237	-				-1.5
1,069,237	-				-1.9
1,069,237	-				-1.7
1,069,237	-				+1.4
1,069,237	-				-0.8
1,069,237	-				+0.3
1,069,244	+				+0.1
1,069,256	+				+0.6
1,069,256	+				-0.9
1,069,256	+				-0.8
1,069,299	+				+0.3
1,069,307	-				-0.1
1,069,347	-				-0.8
1,069,352	-				+1.0
1,069,363	+				-2.5
1,069,372	+				+0.1
1,069,373	-				-0.7
1,069,380	+				+0.1
1,069,382	+				-1.7
1,069,382	+				+0.1
1,069,382	+				+0.9
1,069,382	+				-1.5
1,069,424	-				-1.7
1,069,433	+				-0.8
1,069,462	-				-0.0
1,069,466	-				+0.6
1,069,466	-				-0.1
1,069,501	+				+0.2
1,069,525	+				-1.0
1,069,525	+				-1.0
1,069,525	+				-1.2
1,069,533	-				-1.2
1,069,533	-				-0.2
1,069,533	-				-2.2
1,069,533	-				-1.6
1,069,544	+				-1.0
1,069,544	+				-0.0
1,069,544	+				-0.8
1,069,552	-				+0.1
1,069,552	-				-1.8
1,069,552	-				-0.9
1,069,552	-				+0.5
1,069,552	-				-1.2
1,069,562	-				-1.2
1,069,584	-				+0.6
1,069,615	+				-0.9
1,069,639	-		GFF1065	0.11	+0.3
1,069,639	-		GFF1065	0.11	+0.2
1,069,646	+		GFF1065	0.11	-1.9
1,069,646	+		GFF1065	0.11	-2.7
1,069,659	+		GFF1065	0.11	+0.8
1,069,660	-		GFF1065	0.11	-1.7
1,069,664	+		GFF1065	0.11	+0.2
1,069,664	+		GFF1065	0.11	-0.4
1,069,667	-		GFF1065	0.11	-0.5
1,069,672	-		GFF1065	0.12	-0.9
1,069,672	-		GFF1065	0.12	+0.8
1,069,679	+		GFF1065	0.12	-0.8
1,069,686	+		GFF1065	0.12	-0.4
1,069,686	+		GFF1065	0.12	+0.3
1,069,694	-		GFF1065	0.12	+0.3
1,069,694	-		GFF1065	0.12	-0.5
1,069,696	+		GFF1065	0.12	-0.5
1,069,696	+		GFF1065	0.12	-1.7
1,069,696	+		GFF1065	0.12	-1.1
1,069,696	+		GFF1065	0.12	+1.2
1,069,696	+		GFF1065	0.12	+1.8
1,069,696	+		GFF1065	0.12	+0.1
1,069,696	+		GFF1065	0.12	+1.2
1,069,696	+		GFF1065	0.12	-0.7
1,069,697	-		GFF1065	0.12	-0.0
1,069,704	-		GFF1065	0.13	-0.2
1,069,704	-		GFF1065	0.13	-1.2
1,069,704	-		GFF1065	0.13	-0.4
1,069,704	-		GFF1065	0.13	-0.9
1,069,704	-		GFF1065	0.13	-0.2
1,069,706	+		GFF1065	0.13	+1.4
1,069,706	+		GFF1065	0.13	+0.3
1,069,706	+		GFF1065	0.13	-0.1
1,069,709	-		GFF1065	0.13	+0.2
1,069,714	-		GFF1065	0.13	-0.6
1,069,714	-		GFF1065	0.13	-0.9
1,069,714	-		GFF1065	0.13	-0.6
1,069,719	-		GFF1065	0.13	+0.2
1,069,719	-		GFF1065	0.13	-0.4
1,069,752	-		GFF1065	0.14	+0.9
1,069,757	-		GFF1065	0.14	+0.5
1,069,765	+		GFF1065	0.14	-2.2
1,069,774	-		GFF1065	0.15	-3.0
1,069,775	+		GFF1065	0.15	-0.4
1,069,775	+		GFF1065	0.15	+0.4
1,069,790	-		GFF1065	0.15	-2.4
1,069,841	+		GFF1065	0.17	-1.5
1,069,841	+		GFF1065	0.17	-1.2
1,069,849	-		GFF1065	0.17	+1.0
1,069,868	-		GFF1065	0.17	+0.1
1,069,875	+		GFF1065	0.18	-0.9
1,069,925	+		GFF1065	0.19	-1.1
1,069,930	+		GFF1065	0.19	+0.4
1,069,930	+		GFF1065	0.19	-0.8
1,069,930	+		GFF1065	0.19	-0.9
1,069,930	+		GFF1065	0.19	-0.2
1,069,930	+		GFF1065	0.19	-0.2
1,069,938	-		GFF1065	0.19	+0.4
1,069,938	-		GFF1065	0.19	-0.9
1,069,938	-		GFF1065	0.19	+0.8
1,069,938	-		GFF1065	0.19	-0.3
1,069,944	+		GFF1065	0.20	-1.7
1,069,949	+		GFF1065	0.20	-2.5
1,069,949	+		GFF1065	0.20	+0.2
1,069,957	+		GFF1065	0.20	+0.6
1,069,957	-		GFF1065	0.20	+0.1
1,069,959	+		GFF1065	0.20	-0.4
1,069,959	+		GFF1065	0.20	+0.4
1,069,959	+		GFF1065	0.20	+0.6
1,069,959	+		GFF1065	0.20	+0.4
1,069,959	+		GFF1065	0.20	-0.1
1,069,959	+		GFF1065	0.20	-0.1
1,069,967	-		GFF1065	0.20	+0.1
1,069,967	-		GFF1065	0.20	-1.4
1,069,967	-		GFF1065	0.20	-0.9
1,069,967	-		GFF1065	0.20	-0.6
1,069,995	+		GFF1065	0.21	-1.2
1,070,003	-		GFF1065	0.21	+0.8
1,070,003	-		GFF1065	0.21	-0.8
1,070,027	+		GFF1065	0.22	-0.4
1,070,029	-		GFF1065	0.22	+0.7
1,070,041	+		GFF1065	0.22	-0.1
1,070,044	-		GFF1065	0.22	+1.6
1,070,085	+		GFF1065	0.24	+0.9
1,070,085	+		GFF1065	0.24	+1.2
1,070,105	-		GFF1065	0.24	-2.5
1,070,128	-		GFF1065	0.25	-0.9
1,070,133	+		GFF1065	0.25	-0.2
1,070,174	+		GFF1065	0.26	+1.0
1,070,174	+		GFF1065	0.26	+0.7
1,070,174	+		GFF1065	0.26	+0.5
1,070,182	-		GFF1065	0.26	-1.5
1,070,182	-		GFF1065	0.26	-0.7
1,070,182	-		GFF1065	0.26	-1.2
1,070,182	-		GFF1065	0.26	-2.5
1,070,182	-		GFF1065	0.26	+0.1
1,070,183	+		GFF1065	0.26	-1.6
1,070,183	+		GFF1065	0.26	-0.2
1,070,191	-		GFF1065	0.27	-0.2
1,070,191	-		GFF1065	0.27	-0.5
1,070,191	-		GFF1065	0.27	-1.2