Strain Fitness in Sphingobium sp. HT1-2 around GFF977

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
976,112	+		GFF976	0.33	+0.0
976,118	-		GFF976	0.34	-1.4
976,120	+		GFF976	0.34	-1.3
976,120	+		GFF976	0.34	-1.3
976,154	+		GFF976	0.37	-1.4
976,154	+		GFF976	0.37	-0.4
976,162	-		GFF976	0.38	-1.9
976,183	-		GFF976	0.41	+0.2
976,185	+		GFF976	0.41	-1.5
976,193	-		GFF976	0.42	-0.2
976,197	+		GFF976	0.42	+0.5
976,197	+		GFF976	0.42	-2.5
976,197	+		GFF976	0.42	-0.5
976,197	+		GFF976	0.42	-1.2
976,197	+		GFF976	0.42	+0.2
976,197	+		GFF976	0.42	-1.6
976,205	-		GFF976	0.43	-1.8
976,205	-		GFF976	0.43	-1.1
976,205	-		GFF976	0.43	+0.6
976,205	-		GFF976	0.43	-0.8
976,205	-		GFF976	0.43	+0.2
976,221	+		GFF976	0.45	-1.2
976,221	+		GFF976	0.45	+0.5
976,221	+		GFF976	0.45	-0.1
976,223	-		GFF976	0.45	-2.4
976,226	+		GFF976	0.45	-2.4
976,227	-		GFF976	0.45	-0.1
976,229	-		GFF976	0.45	+0.9
976,229	-		GFF976	0.45	-0.6
976,229	-		GFF976	0.45	-1.1
976,244	-		GFF976	0.47	-2.4
976,253	-		GFF976	0.48	+0.4
976,260	-		GFF976	0.49	-1.7
976,260	-		GFF976	0.49	+0.4
976,260	-		GFF976	0.49	-0.7
976,262	-		GFF976	0.49	-0.5
976,279	+		GFF976	0.51	-0.6
976,279	+		GFF976	0.51	-2.1
976,295	+		GFF976	0.52	+0.1
976,316	+		GFF976	0.55	-0.0
976,341	-		GFF976	0.57	+0.5
976,347	+		GFF976	0.58	-0.3
976,355	-		GFF976	0.59	-1.9
976,355	-		GFF976	0.59	+0.5
976,355	-		GFF976	0.59	-0.7
976,365	-		GFF976	0.60	-0.3
976,386	-		GFF976	0.62	+0.4
976,397	-		GFF976	0.63	-0.1
976,404	+		GFF976	0.64	+0.3
976,422	-		GFF976	0.66	-0.3
976,424	+		GFF976	0.66	+0.5
976,435	+		GFF976	0.67	+0.9
976,435	+		GFF976	0.67	-1.1
976,435	+		GFF976	0.67	+0.6
976,435	+		GFF976	0.67	-1.7
976,435	+		GFF976	0.67	-1.1
976,435	+		GFF976	0.67	-1.2
976,435	+		GFF976	0.67	-0.9
976,435	+		GFF976	0.67	-0.1
976,440	+		GFF976	0.68	+1.3
976,440	+		GFF976	0.68	-0.3
976,440	+		GFF976	0.68	-0.2
976,443	-		GFF976	0.68	+0.0
976,443	-		GFF976	0.68	-0.4
976,443	-		GFF976	0.68	-0.6
976,443	-		GFF976	0.68	+0.9
976,443	-		GFF976	0.68	-0.3
976,443	-		GFF976	0.68	+0.8
976,443	-		GFF976	0.68	-1.0
976,448	-		GFF976	0.69	-2.6
976,448	-		GFF976	0.69	-0.1
976,466	+		GFF976	0.70	+0.3
976,468	+		GFF976	0.71	-1.7
976,471	+		GFF976	0.71	+0.9
976,471	+		GFF976	0.71	+0.6
976,474	-		GFF976	0.71	-1.2
976,476	+		GFF976	0.72	-0.0
976,479	-		GFF976	0.72	-0.2
976,479	-		GFF976	0.72	-1.2
976,479	-		GFF976	0.72	-1.0
976,493	+		GFF976	0.73	-0.3
976,511	-		GFF976	0.75	+0.6
976,511	-		GFF976	0.75	-0.1
976,599	-		GFF976	0.85	-0.7
976,599	-		GFF976	0.85	+1.5
976,602	+		GFF976	0.85	-0.1
976,621	+		GFF976	0.87	+1.2
976,621	+		GFF976	0.87	-2.0
976,629	-		GFF976	0.88	-1.8
976,629	-		GFF976	0.88	+0.4
976,647	-		GFF976	0.90	-0.3
976,651	+				+0.5
976,659	-				+0.6
976,665	+				-0.4
976,668	-				-2.5
976,668	-				+0.4
976,688	+				-0.4
976,705	+				+0.1
976,705	+				-0.7
976,715	+				+0.6
976,731	-				-0.6
976,732	-				+0.3
976,753	-				-1.2
976,777	+				-0.4
976,777	+				+0.4
976,777	+				+1.1
976,777	+				+0.7
976,777	+				-1.1
976,777	+				+0.1
976,777	+				-0.8
976,785	-				+1.3
976,785	-				-0.4
976,785	-				-0.7
976,785	-				-3.0
976,785	-				+0.5
976,785	-				-1.5
976,785	-				+0.0
976,785	-				-0.5
976,787	+				-1.4
976,803	-				-1.1
976,876	-				+0.1
976,905	-				-1.0
976,906	-				+0.1
976,949	+				-1.2
976,959	+				-0.7
976,966	+				+0.8
977,022	+				-1.2
977,095	-				-0.1
977,095	-				+0.6
978,138	-				-0.1
978,141	+				+1.0
978,144	-				-0.7
978,149	-				-1.1
978,149	-				-0.0
978,151	+				+1.3
978,161	+				+0.3
978,204	-				-1.0
978,209	+				-0.1
978,209	+				-1.1
978,210	+				-0.9
978,217	+				-0.5
978,217	+				+0.6
978,217	+				+0.3
978,218	-				-1.9
978,222	+				+1.5
978,225	-				+0.3
978,225	-				+1.0
978,225	-				+0.6
978,244	+				-0.4
978,252	-				+0.3
978,252	-				+1.0
978,252	-				-0.2
978,252	-				-1.6
978,262	+				-1.3
978,267	+				-1.2
978,269	-				-0.7
978,270	-				-1.9
978,275	-				-1.0
978,275	-				-1.8
978,328	+				-1.3
978,354	+				-0.2
978,364	-				-2.6
978,382	-				-0.2
978,411	-		GFF978	0.12	-1.5
978,419	+		GFF978	0.12	-1.5
978,419	+		GFF978	0.12	+0.3
978,419	+		GFF978	0.12	+1.2
978,427	-		GFF978	0.13	-0.4
978,427	-		GFF978	0.13	+0.0
978,427	-		GFF978	0.13	+0.5
978,427	-		GFF978	0.13	-0.4
978,432	+		GFF978	0.13	+1.3
978,479	-		GFF978	0.16	+0.0
978,479	-		GFF978	0.16	-0.6
978,510	+		GFF978	0.17	-1.2
978,512	+		GFF978	0.17	-0.9
978,548	+		GFF978	0.20	-0.7
978,563	+		GFF978	0.20	-0.4
978,563	+		GFF978	0.20	-0.5
978,569	+		GFF978	0.21	-1.3
978,570	+		GFF978	0.21	-2.5
978,570	+		GFF978	0.21	+0.0
978,570	+		GFF978	0.21	+0.5
978,571	-		GFF978	0.21	-0.1
978,578	-		GFF978	0.21	-0.3
978,578	-		GFF978	0.21	-0.9
978,578	-		GFF978	0.21	-0.4
978,578	-		GFF978	0.21	-1.1
978,578	-		GFF978	0.21	-1.7
978,578	-		GFF978	0.21	-0.7
978,582	+		GFF978	0.22	-1.1
978,582	+		GFF978	0.22	-2.8
978,582	+		GFF978	0.22	+0.6
978,582	+		GFF978	0.22	+1.9
978,582	+		GFF978	0.22	-1.0
978,582	+		GFF978	0.22	+1.4
978,582	+		GFF978	0.22	-1.3
978,582	+		GFF978	0.22	-0.4
978,582	+		GFF978	0.22	+0.4
978,582	+		GFF978	0.22	-0.8
978,590	-		GFF978	0.22	+0.3
978,590	-		GFF978	0.22	-1.0
978,590	-		GFF978	0.22	-0.2
978,590	-		GFF978	0.22	-1.4
978,590	-		GFF978	0.22	-0.0
978,595	-		GFF978	0.22	-0.5
978,626	+		GFF978	0.24	+0.0
978,646	+		GFF978	0.25	-0.6
978,668	+		GFF978	0.27	-1.6
978,668	+		GFF978	0.27	-0.2
978,668	+		GFF978	0.27	-0.5
978,668	+		GFF978	0.27	-0.0
978,668	+		GFF978	0.27	-0.3
978,668	+		GFF978	0.27	+0.5
978,668	+		GFF978	0.27	-0.1
978,668	+		GFF978	0.27	-0.3
978,668	+		GFF978	0.27	-1.1
978,668	+		GFF978	0.27	+0.0
978,668	+		GFF978	0.27	-1.0
978,668	+		GFF978	0.27	-0.0
978,668	+		GFF978	0.27	-1.5
978,668	+		GFF978	0.27	+1.2
978,668	+		GFF978	0.27	-1.8
978,671	-		GFF978	0.27	-0.3
978,673	+		GFF978	0.27	-1.2
978,676	-		GFF978	0.27	+0.1
978,676	-		GFF978	0.27	+0.5
978,676	-		GFF978	0.27	+0.5
978,676	-		GFF978	0.27	-0.9
978,676	-		GFF978	0.27	-1.3
978,676	-		GFF978	0.27	+0.4
978,676	-		GFF978	0.27	-1.8
978,676	-		GFF978	0.27	-0.4
978,676	-		GFF978	0.27	+0.7
978,676	-		GFF978	0.27	-1.1
978,676	-		GFF978	0.27	-1.7
978,676	-		GFF978	0.27	-1.1
978,679	+		GFF978	0.27	-1.9
978,681	-		GFF978	0.27	-0.1
978,683	+		GFF978	0.27	-0.6
978,683	+		GFF978	0.27	-0.3
978,683	+		GFF978	0.27	+0.1
978,683	+		GFF978	0.27	-1.4
978,683	+		GFF978	0.27	+0.0
978,683	+		GFF978	0.27	-2.0
978,683	+		GFF978	0.27	-1.5
978,683	+		GFF978	0.27	+0.2
978,683	+		GFF978	0.27	-0.4
978,687	-		GFF978	0.28	-0.5
978,691	-		GFF978	0.28	+0.4
978,691	-		GFF978	0.28	-0.3
978,691	-		GFF978	0.28	+0.7
978,691	-		GFF978	0.28	+0.3
978,691	-		GFF978	0.28	-1.4
978,691	-		GFF978	0.28	-0.8
978,712	-		GFF978	0.29	-1.7
978,715	+		GFF978	0.29	-0.3
978,715	+		GFF978	0.29	-0.8
978,723	-		GFF978	0.30	-2.0
978,723	-		GFF978	0.30	-0.2
978,723	-		GFF978	0.30	-1.4
978,732	+		GFF978	0.30	-0.7
978,744	-		GFF978	0.31	+2.4
978,764	-		GFF978	0.32	-0.3
978,793	+		GFF978	0.34	+0.8
978,805	-		GFF978	0.35	+0.7
978,807	+		GFF978	0.35	-0.1
978,823	-		GFF978	0.36	-1.6
978,832	-		GFF978	0.36	-0.0
978,834	+		GFF978	0.36	-2.3
978,842	-		GFF978	0.37	-2.5
978,863	+		GFF978	0.38	-1.2
978,863	+		GFF978	0.38	-0.2
978,863	+		GFF978	0.38	+0.8
978,870	-		GFF978	0.38	-0.6
978,871	-		GFF978	0.38	-0.2
978,871	-		GFF978	0.38	+0.0
978,871	-		GFF978	0.38	-0.2
978,871	-		GFF978	0.38	-1.2
978,871	-		GFF978	0.38	+0.7
978,885	+		GFF978	0.39	+1.3
978,895	+		GFF978	0.40	+0.7
978,895	+		GFF978	0.40	-0.5
978,895	+		GFF978	0.40	-0.5
978,895	+		GFF978	0.40	-0.3
978,895	+		GFF978	0.40	+0.1
978,895	+		GFF978	0.40	-1.2
978,895	+		GFF978	0.40	-1.9
978,895	+		GFF978	0.40	-0.2
978,895	+		GFF978	0.40	-1.5
978,895	+		GFF978	0.40	-0.3
978,895	+		GFF978	0.40	+0.9
978,895	+		GFF978	0.40	-0.1
978,895	+		GFF978	0.40	-1.1
978,895	+		GFF978	0.40	-1.2
978,895	+		GFF978	0.40	+0.9
978,903	-		GFF978	0.40	+1.4
978,903	-		GFF978	0.40	+0.8
978,903	-		GFF978	0.40	+1.3
978,903	-		GFF978	0.40	-0.6
978,903	-		GFF978	0.40	-2.7
978,903	-		GFF978	0.40	-1.3
978,903	-		GFF978	0.40	-0.2
978,903	-		GFF978	0.40	+0.1
978,903	-		GFF978	0.40	-0.2
978,903	-		GFF978	0.40	-0.5
978,903	-		GFF978	0.40	-0.6
978,903	-		GFF978	0.40	-2.1
978,903	-		GFF978	0.40	-0.7
978,903	-		GFF978	0.40	+0.0
978,903	-		GFF978	0.40	+0.4
978,903	-		GFF978	0.40	+0.1
978,920	+		GFF978	0.41	-2.2
978,935	+		GFF978	0.42	+0.2
978,972	+		GFF978	0.44	+0.0
978,994	+		GFF978	0.46	+0.7
978,996	+		GFF978	0.46	-0.2
979,004	+		GFF978	0.46	+1.4
979,030	-		GFF978	0.48	+0.4
979,031	+		GFF978	0.48	-0.9
979,033	+		GFF978	0.48	+1.0
979,033	+		GFF978	0.48	+0.5
979,033	+		GFF978	0.48	-0.7
979,033	+		GFF978	0.48	-1.8
979,033	+		GFF978	0.48	+0.6
979,041	-		GFF978	0.48	+0.4
979,041	-		GFF978	0.48	-0.8
979,041	-		GFF978	0.48	-1.8
979,043	+		GFF978	0.49	-1.3
979,051	-		GFF978	0.49	-0.4
979,081	-		GFF978	0.51	-0.3
979,082	+		GFF978	0.51	-1.0
979,089	+		GFF978	0.51	+0.9
979,089	+		GFF978	0.51	+0.2
979,089	+		GFF978	0.51	-0.9
979,094	+		GFF978	0.52	-0.7
979,094	+		GFF978	0.52	+1.8
979,094	+		GFF978	0.52	-0.3
979,094	+		GFF978	0.52	+0.3
979,094	+		GFF978	0.52	-1.5
979,094	+		GFF978	0.52	-1.0
979,094	+		GFF978	0.52	-1.9
979,097	-		GFF978	0.52	-1.7
979,100	+		GFF978	0.52	-2.0
979,101	+		GFF978	0.52	-2.0
979,101	+		GFF978	0.52	+1.4
979,102	-		GFF978	0.52	+0.5
979,102	-		GFF978	0.52	-1.5
979,109	-		GFF978	0.52	+1.0
979,109	-		GFF978	0.52	+0.3
979,117	-		GFF978	0.53	-0.4
979,121	-		GFF978	0.53	-1.4
979,127	+		GFF978	0.53	+0.8
979,132	+		GFF978	0.54	+0.6
979,132	+		GFF978	0.54	+0.6
979,134	-		GFF978	0.54	+0.6