Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF974 and GFF975 overlap by 4 nucleotides GFF975 and GFF976 are separated by 246 nucleotides GFF976 and GFF977 are separated by 345 nucleotides
GFF974 - Iron-sulfur cluster assembly protein SufB, at 973,662 to 975,146
GFF974
GFF975 - Iron-sulfur cluster regulator IscR, at 975,143 to 975,553
GFF975
GFF976 - hypothetical protein, at 975,800 to 976,744
GFF976
GFF977 - Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2), at 977,090 to 978,142
GFF977
Position (kb) 975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 975.181 kb on - strand at 975.213 kb on + strand, within GFF975 at 975.234 kb on + strand, within GFF975 at 975.242 kb on - strand, within GFF975 at 975.244 kb on + strand, within GFF975 at 975.261 kb on + strand, within GFF975 at 975.274 kb on - strand, within GFF975 at 975.293 kb on - strand, within GFF975 at 975.301 kb on - strand, within GFF975 at 975.307 kb on - strand, within GFF975 at 975.307 kb on - strand, within GFF975 at 975.330 kb on - strand, within GFF975 at 975.355 kb on + strand, within GFF975 at 975.434 kb on + strand, within GFF975 at 975.434 kb on + strand, within GFF975 at 975.434 kb on + strand, within GFF975 at 975.447 kb on - strand, within GFF975 at 975.468 kb on + strand, within GFF975 at 975.471 kb on - strand, within GFF975 at 975.477 kb on + strand, within GFF975 at 975.489 kb on + strand, within GFF975 at 975.497 kb on - strand, within GFF975 at 975.643 kb on + strand at 975.697 kb on + strand at 975.698 kb on + strand at 975.698 kb on + strand at 975.698 kb on + strand at 975.706 kb on - strand at 975.706 kb on - strand at 975.713 kb on - strand at 975.726 kb on + strand at 975.726 kb on + strand at 975.726 kb on + strand at 975.726 kb on + strand at 975.729 kb on - strand at 975.735 kb on + strand at 975.747 kb on + strand at 975.747 kb on + strand at 975.754 kb on + strand at 975.755 kb on - strand at 975.755 kb on - strand at 975.757 kb on - strand at 975.757 kb on - strand at 975.762 kb on - strand at 975.762 kb on - strand at 975.762 kb on - strand at 975.787 kb on + strand at 975.810 kb on + strand at 975.812 kb on + strand at 975.812 kb on + strand at 975.812 kb on + strand at 975.834 kb on + strand at 975.838 kb on + strand at 975.841 kb on - strand at 975.841 kb on - strand at 975.841 kb on - strand at 975.853 kb on + strand at 975.853 kb on + strand at 975.853 kb on + strand at 975.860 kb on - strand at 975.861 kb on - strand at 975.861 kb on - strand at 975.866 kb on - strand at 975.870 kb on - strand at 975.881 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.882 kb on + strand at 975.883 kb on - strand at 975.890 kb on - strand at 975.890 kb on - strand at 975.890 kb on - strand at 975.890 kb on - strand at 975.890 kb on - strand at 975.890 kb on - strand at 975.890 kb on - strand at 975.890 kb on - strand at 975.892 kb on + strand at 975.898 kb on + strand, within GFF976 at 975.900 kb on - strand, within GFF976 at 975.929 kb on + strand, within GFF976 at 975.943 kb on + strand, within GFF976 at 975.951 kb on - strand, within GFF976 at 975.968 kb on - strand, within GFF976 at 975.970 kb on + strand, within GFF976 at 975.973 kb on - strand, within GFF976 at 975.978 kb on - strand, within GFF976 at 975.980 kb on + strand, within GFF976 at 975.981 kb on + strand, within GFF976 at 975.993 kb on + strand, within GFF976 at 975.996 kb on - strand, within GFF976 at 975.997 kb on - strand, within GFF976 at 976.001 kb on - strand, within GFF976 at 976.008 kb on + strand, within GFF976 at 976.008 kb on + strand, within GFF976 at 976.008 kb on + strand, within GFF976 at 976.016 kb on - strand, within GFF976 at 976.016 kb on - strand, within GFF976 at 976.018 kb on + strand, within GFF976 at 976.020 kb on + strand, within GFF976 at 976.061 kb on - strand, within GFF976 at 976.112 kb on + strand, within GFF976 at 976.118 kb on - strand, within GFF976 at 976.120 kb on + strand, within GFF976 at 976.120 kb on + strand, within GFF976 at 976.154 kb on + strand, within GFF976 at 976.154 kb on + strand, within GFF976 at 976.162 kb on - strand, within GFF976 at 976.183 kb on - strand, within GFF976 at 976.185 kb on + strand, within GFF976 at 976.193 kb on - strand, within GFF976 at 976.197 kb on + strand, within GFF976 at 976.197 kb on + strand, within GFF976 at 976.197 kb on + strand, within GFF976 at 976.197 kb on + strand, within GFF976 at 976.197 kb on + strand, within GFF976 at 976.197 kb on + strand, within GFF976 at 976.205 kb on - strand, within GFF976 at 976.205 kb on - strand, within GFF976 at 976.205 kb on - strand, within GFF976 at 976.205 kb on - strand, within GFF976 at 976.205 kb on - strand, within GFF976 at 976.221 kb on + strand, within GFF976 at 976.221 kb on + strand, within GFF976 at 976.221 kb on + strand, within GFF976 at 976.223 kb on - strand, within GFF976 at 976.226 kb on + strand, within GFF976 at 976.227 kb on - strand, within GFF976 at 976.229 kb on - strand, within GFF976 at 976.229 kb on - strand, within GFF976 at 976.229 kb on - strand, within GFF976 at 976.244 kb on - strand, within GFF976 at 976.253 kb on - strand, within GFF976 at 976.260 kb on - strand, within GFF976 at 976.260 kb on - strand, within GFF976 at 976.260 kb on - strand, within GFF976 at 976.262 kb on - strand, within GFF976 at 976.279 kb on + strand, within GFF976 at 976.279 kb on + strand, within GFF976 at 976.295 kb on + strand, within GFF976 at 976.316 kb on + strand, within GFF976 at 976.341 kb on - strand, within GFF976 at 976.347 kb on + strand, within GFF976 at 976.355 kb on - strand, within GFF976 at 976.355 kb on - strand, within GFF976 at 976.355 kb on - strand, within GFF976 at 976.365 kb on - strand, within GFF976 at 976.386 kb on - strand, within GFF976 at 976.397 kb on - strand, within GFF976 at 976.404 kb on + strand, within GFF976 at 976.422 kb on - strand, within GFF976 at 976.424 kb on + strand, within GFF976 at 976.435 kb on + strand, within GFF976 at 976.435 kb on + strand, within GFF976 at 976.435 kb on + strand, within GFF976 at 976.435 kb on + strand, within GFF976 at 976.435 kb on + strand, within GFF976 at 976.435 kb on + strand, within GFF976 at 976.435 kb on + strand, within GFF976 at 976.435 kb on + strand, within GFF976 at 976.440 kb on + strand, within GFF976 at 976.440 kb on + strand, within GFF976 at 976.440 kb on + strand, within GFF976 at 976.443 kb on - strand, within GFF976 at 976.443 kb on - strand, within GFF976 at 976.443 kb on - strand, within GFF976 at 976.443 kb on - strand, within GFF976 at 976.443 kb on - strand, within GFF976 at 976.443 kb on - strand, within GFF976 at 976.443 kb on - strand, within GFF976 at 976.448 kb on - strand, within GFF976 at 976.448 kb on - strand, within GFF976 at 976.466 kb on + strand, within GFF976 at 976.468 kb on + strand, within GFF976 at 976.471 kb on + strand, within GFF976 at 976.471 kb on + strand, within GFF976 at 976.474 kb on - strand, within GFF976 at 976.476 kb on + strand, within GFF976 at 976.479 kb on - strand, within GFF976 at 976.479 kb on - strand, within GFF976 at 976.479 kb on - strand, within GFF976 at 976.493 kb on + strand, within GFF976 at 976.511 kb on - strand, within GFF976 at 976.511 kb on - strand, within GFF976 at 976.599 kb on - strand, within GFF976 at 976.599 kb on - strand, within GFF976 at 976.602 kb on + strand, within GFF976 at 976.621 kb on + strand, within GFF976 at 976.621 kb on + strand, within GFF976 at 976.629 kb on - strand, within GFF976 at 976.629 kb on - strand, within GFF976 at 976.647 kb on - strand, within GFF976 at 976.651 kb on + strand at 976.659 kb on - strand at 976.665 kb on + strand at 976.668 kb on - strand at 976.668 kb on - strand at 976.688 kb on + strand at 976.705 kb on + strand at 976.705 kb on + strand at 976.715 kb on + strand at 976.731 kb on - strand at 976.732 kb on - strand at 976.753 kb on - strand at 976.777 kb on + strand at 976.777 kb on + strand at 976.777 kb on + strand at 976.777 kb on + strand at 976.777 kb on + strand at 976.777 kb on + strand at 976.777 kb on + strand at 976.785 kb on - strand at 976.785 kb on - strand at 976.785 kb on - strand at 976.785 kb on - strand at 976.785 kb on - strand at 976.785 kb on - strand at 976.785 kb on - strand at 976.785 kb on - strand at 976.787 kb on + strand at 976.803 kb on - strand at 976.876 kb on - strand at 976.905 kb on - strand at 976.906 kb on - strand at 976.949 kb on + strand at 976.959 kb on + strand at 976.966 kb on + strand at 977.022 kb on + strand at 977.095 kb on - strand at 977.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 975,181 - +0.3 975,213 + GFF975 0.17 -1.0 975,234 + GFF975 0.22 -2.2 975,242 - GFF975 0.24 -1.4 975,244 + GFF975 0.25 -1.6 975,261 + GFF975 0.29 -1.2 975,274 - GFF975 0.32 -1.1 975,293 - GFF975 0.36 -0.4 975,301 - GFF975 0.38 -0.2 975,307 - GFF975 0.40 +0.0 975,307 - GFF975 0.40 -0.0 975,330 - GFF975 0.45 -1.5 975,355 + GFF975 0.52 -0.9 975,434 + GFF975 0.71 -1.4 975,434 + GFF975 0.71 -0.2 975,434 + GFF975 0.71 -0.2 975,447 - GFF975 0.74 -1.2 975,468 + GFF975 0.79 -1.9 975,471 - GFF975 0.80 +1.1 975,477 + GFF975 0.81 -0.3 975,489 + GFF975 0.84 -1.5 975,497 - GFF975 0.86 +0.1 975,643 + +0.2 975,697 + -2.0 975,698 + -0.1 975,698 + +0.0 975,698 + -0.8 975,706 - -1.3 975,706 - +1.5 975,713 - -0.5 975,726 + -1.3 975,726 + +0.5 975,726 + +1.4 975,726 + -1.6 975,729 - +0.4 975,735 + -1.3 975,747 + -0.3 975,747 + -1.1 975,754 + -0.6 975,755 - -1.3 975,755 - -1.8 975,757 - -0.7 975,757 - -1.9 975,762 - -0.5 975,762 - -0.4 975,762 - -1.3 975,787 + +0.5 975,810 + -0.6 975,812 + -2.3 975,812 + -1.6 975,812 + -0.3 975,834 + +0.5 975,838 + -1.8 975,841 - -1.8 975,841 - +0.6 975,841 - -0.3 975,853 + -0.5 975,853 + -0.3 975,853 + +1.1 975,860 - -0.7 975,861 - -0.2 975,861 - -0.5 975,866 - +0.9 975,870 - -0.1 975,881 + -1.3 975,882 + +0.4 975,882 + -1.0 975,882 + -0.3 975,882 + -0.1 975,882 + -2.1 975,882 + +1.7 975,882 + +0.0 975,882 + +0.2 975,882 + +1.1 975,882 + +0.2 975,882 + +0.4 975,882 + -0.5 975,883 - +0.2 975,890 - +0.2 975,890 - -0.6 975,890 - -0.4 975,890 - +0.9 975,890 - +0.7 975,890 - -1.9 975,890 - -0.4 975,890 - -1.5 975,892 + -1.1 975,898 + GFF976 0.10 +1.0 975,900 - GFF976 0.11 -0.8 975,929 + GFF976 0.14 +0.3 975,943 + GFF976 0.15 -0.3 975,951 - GFF976 0.16 +0.0 975,968 - GFF976 0.18 -0.3 975,970 + GFF976 0.18 -0.2 975,973 - GFF976 0.18 +0.5 975,978 - GFF976 0.19 -1.4 975,980 + GFF976 0.19 +1.3 975,981 + GFF976 0.19 -0.8 975,993 + GFF976 0.20 -1.7 975,996 - GFF976 0.21 +0.0 975,997 - GFF976 0.21 -2.3 976,001 - GFF976 0.21 -2.2 976,008 + GFF976 0.22 -1.4 976,008 + GFF976 0.22 +0.4 976,008 + GFF976 0.22 +1.2 976,016 - GFF976 0.23 -0.2 976,016 - GFF976 0.23 -1.5 976,018 + GFF976 0.23 -0.0 976,020 + GFF976 0.23 +0.5 976,061 - GFF976 0.28 -0.8 976,112 + GFF976 0.33 +0.0 976,118 - GFF976 0.34 -1.4 976,120 + GFF976 0.34 -1.3 976,120 + GFF976 0.34 -1.3 976,154 + GFF976 0.37 -1.4 976,154 + GFF976 0.37 -0.4 976,162 - GFF976 0.38 -1.9 976,183 - GFF976 0.41 +0.2 976,185 + GFF976 0.41 -1.5 976,193 - GFF976 0.42 -0.2 976,197 + GFF976 0.42 +0.5 976,197 + GFF976 0.42 -2.5 976,197 + GFF976 0.42 -0.5 976,197 + GFF976 0.42 -1.2 976,197 + GFF976 0.42 +0.2 976,197 + GFF976 0.42 -1.6 976,205 - GFF976 0.43 -1.8 976,205 - GFF976 0.43 -1.1 976,205 - GFF976 0.43 +0.6 976,205 - GFF976 0.43 -0.8 976,205 - GFF976 0.43 +0.2 976,221 + GFF976 0.45 -1.2 976,221 + GFF976 0.45 +0.5 976,221 + GFF976 0.45 -0.1 976,223 - GFF976 0.45 -2.4 976,226 + GFF976 0.45 -2.4 976,227 - GFF976 0.45 -0.1 976,229 - GFF976 0.45 +0.9 976,229 - GFF976 0.45 -0.6 976,229 - GFF976 0.45 -1.1 976,244 - GFF976 0.47 -2.4 976,253 - GFF976 0.48 +0.4 976,260 - GFF976 0.49 -1.7 976,260 - GFF976 0.49 +0.4 976,260 - GFF976 0.49 -0.7 976,262 - GFF976 0.49 -0.5 976,279 + GFF976 0.51 -0.6 976,279 + GFF976 0.51 -2.1 976,295 + GFF976 0.52 +0.1 976,316 + GFF976 0.55 -0.0 976,341 - GFF976 0.57 +0.5 976,347 + GFF976 0.58 -0.3 976,355 - GFF976 0.59 -1.9 976,355 - GFF976 0.59 +0.5 976,355 - GFF976 0.59 -0.7 976,365 - GFF976 0.60 -0.3 976,386 - GFF976 0.62 +0.4 976,397 - GFF976 0.63 -0.1 976,404 + GFF976 0.64 +0.3 976,422 - GFF976 0.66 -0.3 976,424 + GFF976 0.66 +0.5 976,435 + GFF976 0.67 +0.9 976,435 + GFF976 0.67 -1.1 976,435 + GFF976 0.67 +0.6 976,435 + GFF976 0.67 -1.7 976,435 + GFF976 0.67 -1.1 976,435 + GFF976 0.67 -1.2 976,435 + GFF976 0.67 -0.9 976,435 + GFF976 0.67 -0.1 976,440 + GFF976 0.68 +1.3 976,440 + GFF976 0.68 -0.3 976,440 + GFF976 0.68 -0.2 976,443 - GFF976 0.68 +0.0 976,443 - GFF976 0.68 -0.4 976,443 - GFF976 0.68 -0.6 976,443 - GFF976 0.68 +0.9 976,443 - GFF976 0.68 -0.3 976,443 - GFF976 0.68 +0.8 976,443 - GFF976 0.68 -1.0 976,448 - GFF976 0.69 -2.6 976,448 - GFF976 0.69 -0.1 976,466 + GFF976 0.70 +0.3 976,468 + GFF976 0.71 -1.7 976,471 + GFF976 0.71 +0.9 976,471 + GFF976 0.71 +0.6 976,474 - GFF976 0.71 -1.2 976,476 + GFF976 0.72 -0.0 976,479 - GFF976 0.72 -0.2 976,479 - GFF976 0.72 -1.2 976,479 - GFF976 0.72 -1.0 976,493 + GFF976 0.73 -0.3 976,511 - GFF976 0.75 +0.6 976,511 - GFF976 0.75 -0.1 976,599 - GFF976 0.85 -0.7 976,599 - GFF976 0.85 +1.5 976,602 + GFF976 0.85 -0.1 976,621 + GFF976 0.87 +1.2 976,621 + GFF976 0.87 -2.0 976,629 - GFF976 0.88 -1.8 976,629 - GFF976 0.88 +0.4 976,647 - GFF976 0.90 -0.3 976,651 + +0.5 976,659 - +0.6 976,665 + -0.4 976,668 - -2.5 976,668 - +0.4 976,688 + -0.4 976,705 + +0.1 976,705 + -0.7 976,715 + +0.6 976,731 - -0.6 976,732 - +0.3 976,753 - -1.2 976,777 + -0.4 976,777 + +0.4 976,777 + +1.1 976,777 + +0.7 976,777 + -1.1 976,777 + +0.1 976,777 + -0.8 976,785 - +1.3 976,785 - -0.4 976,785 - -0.7 976,785 - -3.0 976,785 - +0.5 976,785 - -1.5 976,785 - +0.0 976,785 - -0.5 976,787 + -1.4 976,803 - -1.1 976,876 - +0.1 976,905 - -1.0 976,906 - +0.1 976,949 + -1.2 976,959 + -0.7 976,966 + +0.8 977,022 + -1.2 977,095 - -0.1 977,095 - +0.6
Or see this region's nucleotide sequence