Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF970 and GFF971 overlap by 4 nucleotides GFF971 and GFF972 overlap by 4 nucleotides GFF972 and GFF973 are separated by 171 nucleotides
GFF970 - Cysteine desulfurase (EC 2.8.1.7) => SufS, at 970,207 to 971,412
GFF970
GFF971 - Iron-sulfur cluster assembly protein SufD, at 971,409 to 972,161
GFF971
GFF972 - Iron-sulfur cluster assembly ATPase protein SufC, at 972,158 to 972,904
GFF972
GFF973 - hypothetical protein, at 973,076 to 973,531
GFF973
Position (kb) 971
972
973 Strain fitness (log2 ratio) -2
-1
0
1 at 971.415 kb on - strand at 971.415 kb on - strand at 971.427 kb on - strand at 971.427 kb on - strand at 971.427 kb on - strand at 972.180 kb on - strand at 972.180 kb on - strand at 972.923 kb on - strand at 972.964 kb on - strand at 972.971 kb on - strand at 972.971 kb on - strand at 972.971 kb on - strand at 972.971 kb on - strand at 972.981 kb on + strand at 973.010 kb on - strand at 973.010 kb on - strand at 973.010 kb on - strand at 973.010 kb on - strand at 973.011 kb on - strand at 973.018 kb on - strand at 973.040 kb on - strand at 973.066 kb on - strand at 973.075 kb on - strand at 973.081 kb on - strand at 973.081 kb on - strand at 973.104 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.118 kb on - strand at 973.154 kb on - strand, within GFF973 at 973.155 kb on - strand, within GFF973 at 973.159 kb on - strand, within GFF973
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 971,415 - +0.4 971,415 - -0.4 971,427 - -1.1 971,427 - -1.0 971,427 - -0.8 972,180 - -0.3 972,180 - -1.8 972,923 - -1.1 972,964 - -1.3 972,971 - +0.3 972,971 - -0.1 972,971 - -0.3 972,971 - -0.0 972,981 + -2.5 973,010 - +0.2 973,010 - -1.2 973,010 - -1.4 973,010 - -0.3 973,011 - -0.8 973,018 - +0.3 973,040 - -0.2 973,066 - +0.1 973,075 - -0.9 973,081 - +1.0 973,081 - -0.3 973,104 - +1.3 973,118 - +1.6 973,118 - -0.5 973,118 - -2.3 973,118 - -0.2 973,118 - -0.1 973,118 - +0.3 973,118 - -0.3 973,118 - +1.1 973,118 - -0.9 973,118 - -0.4 973,118 - +0.3 973,118 - +0.6 973,154 - GFF973 0.17 +1.0 973,155 - GFF973 0.17 -0.6 973,159 - GFF973 0.18 -0.5
Or see this region's nucleotide sequence