Strain Fitness in Sphingobium sp. HT1-2 around GFF95

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF94 and GFF95 are separated by 17 nucleotidesGFF95 and GFF96 overlap by 4 nucleotidesGFF96 and GFF97 are separated by 52 nucleotides GFF94 - hypothetical protein, at 83,743 to 85,359 GFF94 GFF95 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 85,377 to 86,237 GFF95 GFF96 - Predicted N-formylglutamate amidohydrolase, at 86,234 to 86,950 GFF96 GFF97 - hypothetical protein, at 87,003 to 87,359 GFF97 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2at 84.388 kb on + strand, within GFF94at 84.388 kb on + strand, within GFF94at 84.401 kb on - strand, within GFF94at 84.420 kb on + strand, within GFF94at 84.449 kb on + strand, within GFF94at 84.452 kb on - strand, within GFF94at 84.461 kb on + strand, within GFF94at 84.461 kb on + strand, within GFF94at 84.463 kb on - strand, within GFF94at 84.472 kb on + strand, within GFF94at 84.525 kb on + strand, within GFF94at 84.528 kb on - strand, within GFF94at 84.551 kb on - strand, within GFF94at 84.569 kb on - strand, within GFF94at 84.579 kb on - strand, within GFF94at 84.651 kb on + strand, within GFF94at 84.670 kb on + strand, within GFF94at 84.698 kb on + strand, within GFF94at 84.701 kb on - strand, within GFF94at 84.710 kb on - strand, within GFF94at 84.718 kb on + strand, within GFF94at 84.718 kb on + strand, within GFF94at 84.742 kb on + strand, within GFF94at 84.801 kb on - strand, within GFF94at 84.849 kb on - strand, within GFF94at 84.874 kb on - strand, within GFF94at 84.882 kb on + strand, within GFF94at 84.890 kb on - strand, within GFF94at 84.890 kb on - strand, within GFF94at 84.895 kb on - strand, within GFF94at 84.909 kb on - strand, within GFF94at 84.914 kb on + strand, within GFF94at 84.914 kb on + strand, within GFF94at 84.924 kb on + strand, within GFF94at 84.932 kb on - strand, within GFF94at 84.937 kb on + strand, within GFF94at 84.937 kb on + strand, within GFF94at 84.937 kb on + strand, within GFF94at 84.947 kb on + strand, within GFF94at 84.950 kb on - strand, within GFF94at 84.962 kb on - strand, within GFF94at 85.010 kb on + strand, within GFF94at 85.018 kb on - strand, within GFF94at 85.023 kb on - strand, within GFF94at 85.023 kb on - strand, within GFF94at 85.023 kb on - strand, within GFF94at 85.028 kb on - strand, within GFF94at 85.037 kb on + strand, within GFF94at 85.056 kb on - strand, within GFF94at 85.116 kb on - strand, within GFF94at 85.117 kb on - strand, within GFF94at 85.127 kb on - strand, within GFF94at 85.133 kb on - strand, within GFF94at 85.138 kb on + strand, within GFF94at 85.140 kb on + strand, within GFF94at 85.140 kb on + strand, within GFF94at 85.140 kb on + strand, within GFF94at 85.140 kb on + strand, within GFF94at 85.148 kb on + strand, within GFF94at 85.148 kb on - strand, within GFF94at 85.148 kb on - strand, within GFF94at 85.161 kb on - strand, within GFF94at 85.210 kb on + strandat 85.210 kb on + strandat 85.210 kb on + strandat 85.218 kb on - strandat 85.218 kb on - strandat 85.218 kb on - strandat 85.225 kb on + strandat 85.225 kb on + strandat 85.308 kb on + strandat 85.320 kb on + strandat 85.321 kb on - strandat 85.330 kb on + strandat 85.332 kb on + strandat 85.340 kb on - strandat 85.382 kb on - strandat 86.222 kb on + strandat 86.222 kb on + strandat 86.222 kb on + strandat 86.230 kb on - strandat 86.230 kb on - strandat 86.236 kb on + strandat 86.243 kb on + strandat 86.243 kb on + strandat 86.243 kb on + strandat 86.243 kb on + strandat 86.243 kb on + strandat 86.243 kb on + strandat 86.245 kb on + strandat 86.251 kb on - strandat 86.251 kb on - strandat 86.251 kb on - strandat 86.251 kb on - strandat 86.251 kb on - strandat 86.251 kb on - strandat 86.251 kb on - strandat 86.268 kb on + strandat 86.276 kb on - strandat 86.278 kb on + strandat 86.289 kb on - strandat 86.309 kb on + strand, within GFF96at 86.311 kb on - strand, within GFF96at 86.319 kb on + strand, within GFF96at 86.327 kb on - strand, within GFF96at 86.370 kb on + strand, within GFF96at 86.386 kb on + strand, within GFF96at 86.421 kb on + strand, within GFF96at 86.463 kb on + strand, within GFF96at 86.473 kb on + strand, within GFF96at 86.494 kb on + strand, within GFF96at 86.526 kb on - strand, within GFF96at 86.549 kb on + strand, within GFF96at 86.564 kb on + strand, within GFF96at 86.584 kb on - strand, within GFF96at 86.585 kb on + strand, within GFF96at 86.609 kb on + strand, within GFF96at 86.609 kb on + strand, within GFF96at 86.609 kb on + strand, within GFF96at 86.615 kb on + strand, within GFF96at 86.616 kb on - strand, within GFF96at 86.623 kb on - strand, within GFF96at 86.623 kb on - strand, within GFF96at 86.623 kb on - strand, within GFF96at 86.638 kb on - strand, within GFF96at 86.638 kb on - strand, within GFF96at 86.643 kb on + strand, within GFF96at 86.686 kb on + strand, within GFF96at 86.687 kb on - strand, within GFF96at 86.771 kb on + strand, within GFF96at 86.776 kb on + strand, within GFF96at 86.776 kb on + strand, within GFF96at 86.776 kb on + strand, within GFF96at 86.776 kb on + strand, within GFF96at 86.779 kb on - strand, within GFF96at 86.779 kb on - strand, within GFF96at 86.781 kb on + strand, within GFF96at 86.781 kb on + strand, within GFF96at 86.781 kb on + strand, within GFF96at 86.781 kb on + strand, within GFF96at 86.789 kb on - strand, within GFF96at 86.804 kb on + strand, within GFF96at 86.804 kb on + strand, within GFF96at 86.812 kb on - strand, within GFF96at 86.880 kb on + strandat 86.880 kb on + strandat 86.880 kb on + strandat 86.880 kb on - strandat 86.913 kb on + strandat 86.916 kb on - strandat 86.916 kb on - strandat 86.921 kb on + strandat 86.926 kb on + strandat 86.948 kb on - strandat 86.960 kb on - strandat 86.960 kb on - strandat 86.973 kb on + strandat 86.981 kb on - strandat 86.992 kb on + strandat 86.992 kb on + strandat 86.997 kb on + strandat 87.000 kb on - strandat 87.000 kb on - strandat 87.000 kb on - strandat 87.024 kb on + strandat 87.029 kb on + strandat 87.029 kb on + strandat 87.039 kb on + strand, within GFF97at 87.039 kb on + strand, within GFF97at 87.047 kb on - strand, within GFF97at 87.058 kb on + strand, within GFF97at 87.058 kb on - strand, within GFF97at 87.062 kb on + strand, within GFF97at 87.062 kb on + strand, within GFF97at 87.070 kb on - strand, within GFF97at 87.113 kb on - strand, within GFF97at 87.149 kb on - strand, within GFF97at 87.171 kb on + strand, within GFF97at 87.171 kb on + strand, within GFF97at 87.172 kb on + strand, within GFF97at 87.173 kb on - strand, within GFF97at 87.209 kb on + strand, within GFF97at 87.209 kb on + strand, within GFF97at 87.209 kb on + strand, within GFF97at 87.217 kb on - strand, within GFF97at 87.217 kb on - strand, within GFF97at 87.219 kb on + strand, within GFF97at 87.229 kb on + strand, within GFF97at 87.232 kb on - strand, within GFF97at 87.232 kb on - strand, within GFF97at 87.237 kb on - strand, within GFF97at 87.237 kb on - strand, within GFF97

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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84,388 + GFF94 0.40 -2.2
84,388 + GFF94 0.40 -0.0
84,401 - GFF94 0.41 -1.9
84,420 + GFF94 0.42 -0.7
84,449 + GFF94 0.44 +0.8
84,452 - GFF94 0.44 -0.5
84,461 + GFF94 0.44 -1.3
84,461 + GFF94 0.44 +0.4
84,463 - GFF94 0.45 -1.4
84,472 + GFF94 0.45 +1.3
84,525 + GFF94 0.48 +0.1
84,528 - GFF94 0.49 -0.8
84,551 - GFF94 0.50 +0.6
84,569 - GFF94 0.51 -2.2
84,579 - GFF94 0.52 -1.1
84,651 + GFF94 0.56 -0.5
84,670 + GFF94 0.57 -1.3
84,698 + GFF94 0.59 +0.7
84,701 - GFF94 0.59 -2.5
84,710 - GFF94 0.60 +0.1
84,718 + GFF94 0.60 +0.0
84,718 + GFF94 0.60 +0.3
84,742 + GFF94 0.62 -1.2
84,801 - GFF94 0.65 +0.1
84,849 - GFF94 0.68 -0.1
84,874 - GFF94 0.70 +0.5
84,882 + GFF94 0.70 +1.0
84,890 - GFF94 0.71 +0.5
84,890 - GFF94 0.71 -2.0
84,895 - GFF94 0.71 -0.3
84,909 - GFF94 0.72 -1.2
84,914 + GFF94 0.72 +0.3
84,914 + GFF94 0.72 -1.7
84,924 + GFF94 0.73 -1.6
84,932 - GFF94 0.74 +0.2
84,937 + GFF94 0.74 -0.3
84,937 + GFF94 0.74 +0.8
84,937 + GFF94 0.74 -0.8
84,947 + GFF94 0.74 -0.1
84,950 - GFF94 0.75 -2.6
84,962 - GFF94 0.75 -0.8
85,010 + GFF94 0.78 -1.0
85,018 - GFF94 0.79 -1.3
85,023 - GFF94 0.79 -0.0
85,023 - GFF94 0.79 +0.2
85,023 - GFF94 0.79 -1.1
85,028 - GFF94 0.79 -2.0
85,037 + GFF94 0.80 +1.7
85,056 - GFF94 0.81 -0.3
85,116 - GFF94 0.85 -2.3
85,117 - GFF94 0.85 +0.2
85,127 - GFF94 0.86 -0.8
85,133 - GFF94 0.86 +1.5
85,138 + GFF94 0.86 +0.2
85,140 + GFF94 0.86 -0.7
85,140 + GFF94 0.86 -0.2
85,140 + GFF94 0.86 +1.1
85,140 + GFF94 0.86 +0.5
85,148 + GFF94 0.87 +0.2
85,148 - GFF94 0.87 +0.6
85,148 - GFF94 0.87 -0.1
85,161 - GFF94 0.88 +0.0
85,210 + -0.7
85,210 + +0.7
85,210 + +0.7
85,218 - +1.5
85,218 - +0.9
85,218 - +0.9
85,225 + -0.2
85,225 + +0.0
85,308 + +1.3
85,320 + -0.6
85,321 - -0.6
85,330 + +0.7
85,332 + +1.2
85,340 - -1.8
85,382 - -1.3
86,222 + -2.0
86,222 + -1.1
86,222 + +0.9
86,230 - +0.5
86,230 - -1.3
86,236 + -0.3
86,243 + -0.5
86,243 + -1.0
86,243 + -0.9
86,243 + -0.5
86,243 + -0.3
86,243 + -2.0
86,245 + -0.9
86,251 - +0.4
86,251 - -0.4
86,251 - +0.6
86,251 - +0.1
86,251 - -0.9
86,251 - -0.2
86,251 - +0.2
86,268 + -1.8
86,276 - +0.9
86,278 + -0.1
86,289 - -0.5
86,309 + GFF96 0.10 +0.1
86,311 - GFF96 0.11 -1.1
86,319 + GFF96 0.12 -0.1
86,327 - GFF96 0.13 +0.6
86,370 + GFF96 0.19 -1.2
86,386 + GFF96 0.21 -1.1
86,421 + GFF96 0.26 +1.2
86,463 + GFF96 0.32 -0.5
86,473 + GFF96 0.33 +2.2
86,494 + GFF96 0.36 +0.5
86,526 - GFF96 0.41 -1.4
86,549 + GFF96 0.44 +0.7
86,564 + GFF96 0.46 -0.1
86,584 - GFF96 0.49 -0.4
86,585 + GFF96 0.49 -0.4
86,609 + GFF96 0.52 -0.7
86,609 + GFF96 0.52 -0.5
86,609 + GFF96 0.52 -0.8
86,615 + GFF96 0.53 -0.6
86,616 - GFF96 0.53 +0.3
86,623 - GFF96 0.54 +0.4
86,623 - GFF96 0.54 -1.7
86,623 - GFF96 0.54 -1.0
86,638 - GFF96 0.56 +0.0
86,638 - GFF96 0.56 +2.0
86,643 + GFF96 0.57 +1.3
86,686 + GFF96 0.63 +0.5
86,687 - GFF96 0.63 -0.3
86,771 + GFF96 0.75 +0.2
86,776 + GFF96 0.76 -0.3
86,776 + GFF96 0.76 +0.6
86,776 + GFF96 0.76 +0.1
86,776 + GFF96 0.76 -1.3
86,779 - GFF96 0.76 +0.1
86,779 - GFF96 0.76 -2.1
86,781 + GFF96 0.76 -1.3
86,781 + GFF96 0.76 -0.6
86,781 + GFF96 0.76 +0.2
86,781 + GFF96 0.76 -0.3
86,789 - GFF96 0.77 -1.5
86,804 + GFF96 0.79 +0.5
86,804 + GFF96 0.79 -0.3
86,812 - GFF96 0.81 -1.6
86,880 + +0.1
86,880 + -0.1
86,880 + -0.1
86,880 - -0.8
86,913 + -1.3
86,916 - +0.9
86,916 - -1.1
86,921 + +0.2
86,926 + -0.9
86,948 - -1.7
86,960 - +0.9
86,960 - +0.6
86,973 + -0.5
86,981 - +1.1
86,992 + -1.0
86,992 + +1.0
86,997 + -1.1
87,000 - -1.4
87,000 - -0.7
87,000 - -2.2
87,024 + +0.6
87,029 + -1.0
87,029 + +0.1
87,039 + GFF97 0.10 -0.1
87,039 + GFF97 0.10 +0.2
87,047 - GFF97 0.12 -2.3
87,058 + GFF97 0.15 +0.5
87,058 - GFF97 0.15 -0.4
87,062 + GFF97 0.17 +0.9
87,062 + GFF97 0.17 +0.6
87,070 - GFF97 0.19 +0.6
87,113 - GFF97 0.31 -0.1
87,149 - GFF97 0.41 -0.8
87,171 + GFF97 0.47 +0.5
87,171 + GFF97 0.47 -1.1
87,172 + GFF97 0.47 +0.3
87,173 - GFF97 0.48 +0.1
87,209 + GFF97 0.58 +0.4
87,209 + GFF97 0.58 -0.1
87,209 + GFF97 0.58 +1.2
87,217 - GFF97 0.60 +0.2
87,217 - GFF97 0.60 -2.4
87,219 + GFF97 0.61 +0.4
87,229 + GFF97 0.63 -1.0
87,232 - GFF97 0.64 -0.1
87,232 - GFF97 0.64 -0.4
87,237 - GFF97 0.66 +0.2
87,237 - GFF97 0.66 -0.5

Or see this region's nucleotide sequence