Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF91 and GFF92 overlap by 4 nucleotides GFF92 and GFF93 are separated by 81 nucleotides
GFF91 - Lytic murein transglycosylase, at 79,417 to 81,204
GFF91
GFF92 - Uracil-DNA glycosylase superfamily, at 81,201 to 81,983
GFF92
GFF93 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 82,065 to 83,717
GFF93
Position (kb) 81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.253 kb on - strand, within GFF91 at 80.257 kb on + strand, within GFF91 at 80.260 kb on - strand, within GFF91 at 80.264 kb on - strand, within GFF91 at 80.280 kb on + strand, within GFF91 at 80.280 kb on + strand, within GFF91 at 80.280 kb on + strand, within GFF91 at 80.280 kb on - strand, within GFF91 at 80.288 kb on - strand, within GFF91 at 80.323 kb on + strand, within GFF91 at 80.323 kb on + strand, within GFF91 at 80.332 kb on - strand, within GFF91 at 80.352 kb on + strand, within GFF91 at 80.352 kb on + strand, within GFF91 at 80.352 kb on + strand, within GFF91 at 80.352 kb on + strand, within GFF91 at 80.352 kb on + strand, within GFF91 at 80.352 kb on + strand, within GFF91 at 80.352 kb on + strand, within GFF91 at 80.352 kb on + strand, within GFF91 at 80.357 kb on - strand, within GFF91 at 80.360 kb on - strand, within GFF91 at 80.360 kb on - strand, within GFF91 at 80.360 kb on - strand, within GFF91 at 80.360 kb on - strand, within GFF91 at 80.360 kb on - strand, within GFF91 at 80.360 kb on - strand, within GFF91 at 80.377 kb on - strand, within GFF91 at 80.402 kb on + strand, within GFF91 at 80.439 kb on - strand, within GFF91 at 80.440 kb on - strand, within GFF91 at 80.486 kb on + strand, within GFF91 at 80.486 kb on - strand, within GFF91 at 80.496 kb on + strand, within GFF91 at 80.499 kb on - strand, within GFF91 at 80.499 kb on - strand, within GFF91 at 80.499 kb on - strand, within GFF91 at 80.501 kb on + strand, within GFF91 at 80.501 kb on + strand, within GFF91 at 80.501 kb on + strand, within GFF91 at 80.509 kb on - strand, within GFF91 at 80.509 kb on - strand, within GFF91 at 80.509 kb on - strand, within GFF91 at 80.509 kb on - strand, within GFF91 at 80.521 kb on + strand, within GFF91 at 80.529 kb on - strand, within GFF91 at 80.529 kb on - strand, within GFF91 at 80.546 kb on - strand, within GFF91 at 80.571 kb on + strand, within GFF91 at 80.579 kb on - strand, within GFF91 at 80.587 kb on + strand, within GFF91 at 80.590 kb on - strand, within GFF91 at 80.598 kb on + strand, within GFF91 at 80.598 kb on + strand, within GFF91 at 80.606 kb on + strand, within GFF91 at 80.608 kb on + strand, within GFF91 at 80.608 kb on + strand, within GFF91 at 80.608 kb on + strand, within GFF91 at 80.616 kb on - strand, within GFF91 at 80.616 kb on - strand, within GFF91 at 80.616 kb on - strand, within GFF91 at 80.632 kb on + strand, within GFF91 at 80.655 kb on - strand, within GFF91 at 80.689 kb on + strand, within GFF91 at 80.689 kb on + strand, within GFF91 at 80.698 kb on - strand, within GFF91 at 80.703 kb on - strand, within GFF91 at 80.703 kb on - strand, within GFF91 at 80.768 kb on - strand, within GFF91 at 80.768 kb on - strand, within GFF91 at 80.768 kb on - strand, within GFF91 at 80.770 kb on - strand, within GFF91 at 80.772 kb on + strand, within GFF91 at 80.775 kb on + strand, within GFF91 at 80.779 kb on - strand, within GFF91 at 80.782 kb on + strand, within GFF91 at 80.799 kb on + strand, within GFF91 at 80.804 kb on + strand, within GFF91 at 80.816 kb on - strand, within GFF91 at 80.824 kb on + strand, within GFF91 at 80.847 kb on + strand, within GFF91 at 80.847 kb on + strand, within GFF91 at 80.852 kb on + strand, within GFF91 at 80.852 kb on + strand, within GFF91 at 80.852 kb on + strand, within GFF91 at 80.852 kb on + strand, within GFF91 at 80.852 kb on + strand, within GFF91 at 80.852 kb on + strand, within GFF91 at 80.852 kb on + strand, within GFF91 at 80.852 kb on + strand, within GFF91 at 80.852 kb on + strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.860 kb on - strand, within GFF91 at 80.870 kb on + strand, within GFF91 at 80.890 kb on - strand, within GFF91 at 80.904 kb on - strand, within GFF91 at 80.926 kb on - strand, within GFF91 at 80.934 kb on + strand, within GFF91 at 80.956 kb on + strand, within GFF91 at 80.964 kb on - strand, within GFF91 at 80.970 kb on + strand, within GFF91 at 80.978 kb on - strand, within GFF91 at 81.014 kb on - strand, within GFF91 at 81.016 kb on + strand, within GFF91 at 81.016 kb on + strand, within GFF91 at 81.021 kb on + strand, within GFF91 at 81.024 kb on - strand, within GFF91 at 81.024 kb on - strand, within GFF91 at 81.029 kb on - strand at 81.029 kb on - strand at 81.029 kb on - strand at 81.040 kb on + strand at 81.056 kb on - strand at 81.070 kb on - strand at 81.085 kb on - strand at 81.099 kb on + strand at 81.103 kb on + strand at 81.103 kb on + strand at 81.104 kb on + strand at 81.106 kb on + strand at 81.106 kb on + strand at 81.111 kb on + strand at 81.111 kb on - strand at 81.112 kb on + strand at 81.123 kb on + strand at 81.123 kb on + strand at 81.131 kb on - strand at 81.158 kb on + strand at 81.161 kb on - strand at 81.163 kb on + strand at 81.166 kb on - strand at 81.166 kb on - strand at 81.166 kb on - strand at 81.166 kb on - strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.171 kb on - strand at 81.176 kb on - strand at 81.176 kb on - strand at 81.176 kb on - strand at 81.176 kb on - strand at 81.176 kb on - strand at 81.176 kb on - strand at 81.246 kb on - strand at 81.945 kb on - strand at 81.945 kb on - strand at 81.952 kb on - strand at 81.968 kb on + strand at 81.994 kb on + strand at 81.994 kb on + strand at 82.016 kb on - strand at 82.045 kb on + strand at 82.049 kb on + strand at 82.054 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 80,253 - GFF91 0.47 -1.1 80,257 + GFF91 0.47 +0.6 80,260 - GFF91 0.47 -0.3 80,264 - GFF91 0.47 -1.6 80,280 + GFF91 0.48 -1.1 80,280 + GFF91 0.48 -1.3 80,280 + GFF91 0.48 -0.4 80,280 - GFF91 0.48 -1.1 80,288 - GFF91 0.49 -1.5 80,323 + GFF91 0.51 -1.4 80,323 + GFF91 0.51 -0.1 80,332 - GFF91 0.51 +0.5 80,352 + GFF91 0.52 -1.1 80,352 + GFF91 0.52 -0.3 80,352 + GFF91 0.52 +0.5 80,352 + GFF91 0.52 -1.1 80,352 + GFF91 0.52 -2.4 80,352 + GFF91 0.52 +0.6 80,352 + GFF91 0.52 -0.4 80,352 + GFF91 0.52 -1.5 80,357 - GFF91 0.53 -0.3 80,360 - GFF91 0.53 -1.5 80,360 - GFF91 0.53 -1.0 80,360 - GFF91 0.53 +0.0 80,360 - GFF91 0.53 -0.2 80,360 - GFF91 0.53 -0.4 80,360 - GFF91 0.53 +0.1 80,377 - GFF91 0.54 +1.3 80,402 + GFF91 0.55 -1.8 80,439 - GFF91 0.57 +0.8 80,440 - GFF91 0.57 -1.0 80,486 + GFF91 0.60 +1.0 80,486 - GFF91 0.60 -0.2 80,496 + GFF91 0.60 -0.3 80,499 - GFF91 0.61 +0.0 80,499 - GFF91 0.61 -0.8 80,499 - GFF91 0.61 -0.7 80,501 + GFF91 0.61 +1.0 80,501 + GFF91 0.61 -1.5 80,501 + GFF91 0.61 -0.2 80,509 - GFF91 0.61 +0.0 80,509 - GFF91 0.61 -1.1 80,509 - GFF91 0.61 -0.4 80,509 - GFF91 0.61 -0.4 80,521 + GFF91 0.62 -2.8 80,529 - GFF91 0.62 +0.5 80,529 - GFF91 0.62 +0.2 80,546 - GFF91 0.63 -0.9 80,571 + GFF91 0.65 -1.0 80,579 - GFF91 0.65 +0.4 80,587 + GFF91 0.65 -0.7 80,590 - GFF91 0.66 -1.3 80,598 + GFF91 0.66 +0.4 80,598 + GFF91 0.66 +0.2 80,606 + GFF91 0.66 -2.1 80,608 + GFF91 0.67 -2.2 80,608 + GFF91 0.67 -0.4 80,608 + GFF91 0.67 -0.8 80,616 - GFF91 0.67 -1.4 80,616 - GFF91 0.67 +0.2 80,616 - GFF91 0.67 +0.8 80,632 + GFF91 0.68 -2.5 80,655 - GFF91 0.69 +0.7 80,689 + GFF91 0.71 -1.0 80,689 + GFF91 0.71 -1.5 80,698 - GFF91 0.72 +0.4 80,703 - GFF91 0.72 -1.5 80,703 - GFF91 0.72 -0.3 80,768 - GFF91 0.76 -0.5 80,768 - GFF91 0.76 +0.8 80,768 - GFF91 0.76 -1.4 80,770 - GFF91 0.76 -0.6 80,772 + GFF91 0.76 +0.8 80,775 + GFF91 0.76 -0.7 80,779 - GFF91 0.76 -0.6 80,782 + GFF91 0.76 -1.6 80,799 + GFF91 0.77 +0.4 80,804 + GFF91 0.78 +0.2 80,816 - GFF91 0.78 -0.1 80,824 + GFF91 0.79 -0.5 80,847 + GFF91 0.80 -3.2 80,847 + GFF91 0.80 +0.1 80,852 + GFF91 0.80 +0.4 80,852 + GFF91 0.80 -1.4 80,852 + GFF91 0.80 -0.8 80,852 + GFF91 0.80 -1.1 80,852 + GFF91 0.80 -2.0 80,852 + GFF91 0.80 -1.6 80,852 + GFF91 0.80 -0.3 80,852 + GFF91 0.80 -1.8 80,852 + GFF91 0.80 +0.4 80,860 - GFF91 0.81 -0.8 80,860 - GFF91 0.81 -0.1 80,860 - GFF91 0.81 -0.8 80,860 - GFF91 0.81 +0.5 80,860 - GFF91 0.81 +0.1 80,860 - GFF91 0.81 -1.5 80,860 - GFF91 0.81 -1.4 80,860 - GFF91 0.81 +0.2 80,860 - GFF91 0.81 +1.2 80,860 - GFF91 0.81 -2.4 80,860 - GFF91 0.81 -0.6 80,860 - GFF91 0.81 -1.1 80,870 + GFF91 0.81 -0.6 80,890 - GFF91 0.82 -0.3 80,904 - GFF91 0.83 -0.7 80,926 - GFF91 0.84 -1.1 80,934 + GFF91 0.85 +0.1 80,956 + GFF91 0.86 -0.2 80,964 - GFF91 0.87 +0.4 80,970 + GFF91 0.87 +0.6 80,978 - GFF91 0.87 +0.1 81,014 - GFF91 0.89 -2.3 81,016 + GFF91 0.89 -0.4 81,016 + GFF91 0.89 +0.6 81,021 + GFF91 0.90 -0.2 81,024 - GFF91 0.90 -1.0 81,024 - GFF91 0.90 +0.3 81,029 - -0.8 81,029 - -0.2 81,029 - +0.2 81,040 + +1.0 81,056 - -3.0 81,070 - -0.7 81,085 - +0.1 81,099 + +0.1 81,103 + -1.2 81,103 + -1.7 81,104 + +0.0 81,106 + -0.6 81,106 + +0.5 81,111 + -1.3 81,111 - -1.6 81,112 + +0.8 81,123 + -0.6 81,123 + +0.5 81,131 - -0.1 81,158 + +0.9 81,161 - -0.5 81,163 + -0.3 81,166 - +0.8 81,166 - +0.6 81,166 - -0.1 81,166 - +0.5 81,168 + -0.8 81,168 + +0.7 81,168 + -0.5 81,168 + -0.9 81,168 + +1.6 81,168 + -1.4 81,168 + +0.3 81,168 + -0.2 81,168 + +0.5 81,168 + -1.9 81,171 - +1.3 81,176 - +0.8 81,176 - +0.3 81,176 - +0.9 81,176 - +1.3 81,176 - -2.4 81,176 - -0.0 81,246 - -0.8 81,945 - -0.9 81,945 - -2.4 81,952 - +1.1 81,968 + +0.0 81,994 + +0.3 81,994 + +1.0 82,016 - -0.3 82,045 + +0.9 82,049 + -1.4 82,054 + +0.8
Or see this region's nucleotide sequence