Strain Fitness in Sphingobium sp. HT1-2 around GFF90

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
77,899	-		GFF88	0.77	+0.1
77,901	-		GFF88	0.77	-1.6
77,905	+		GFF88	0.78	+0.1
77,913	-		GFF88	0.79	-1.6
77,937	+		GFF88	0.81	+0.5
77,981	-		GFF88	0.85	-1.1
77,981	-		GFF88	0.85	+0.5
77,990	-		GFF88	0.86	-1.6
78,024	-		GFF88	0.89	-1.2
78,047	+				-0.3
78,047	-				+1.0
78,047	-				-0.2
78,084	+				+0.0
78,084	+				+0.2
78,092	-				+0.5
78,106	+				-0.5
78,111	+				+1.5
78,114	-				+0.5
78,114	-				+0.6
78,119	-				-0.3
78,191	+				-2.1
78,191	+				-0.5
78,204	-				+0.1
78,213	-				-0.9
78,213	-				-0.3
78,213	-				+1.1
78,223	+				-0.2
78,248	-				-2.5
78,248	-				-1.1
78,251	+				-3.1
78,259	-				-0.9
78,290	+		GFF89	0.12	+0.5
78,298	+		GFF89	0.14	+0.1
78,311	+		GFF89	0.16	+0.5
78,311	+		GFF89	0.16	+1.1
78,316	+		GFF89	0.17	+0.7
78,319	-		GFF89	0.18	-1.1
78,319	-		GFF89	0.18	-0.5
78,319	-		GFF89	0.18	-0.3
78,329	-		GFF89	0.20	+0.4
78,331	+		GFF89	0.20	+0.8
78,351	-		GFF89	0.24	-0.2
78,365	+		GFF89	0.27	+0.7
78,365	+		GFF89	0.27	-1.4
78,373	-		GFF89	0.28	-0.2
78,373	-		GFF89	0.28	-1.1
78,374	-		GFF89	0.29	+0.1
78,388	+		GFF89	0.31	-0.7
78,418	-		GFF89	0.37	-0.2
78,469	+		GFF89	0.47	+0.1
78,546	+		GFF89	0.62	-0.5
78,546	+		GFF89	0.62	-0.3
78,554	-		GFF89	0.64	-2.1
78,554	-		GFF89	0.64	-0.1
78,556	+		GFF89	0.64	-0.3
78,556	+		GFF89	0.64	-1.1
78,577	-		GFF89	0.68	-1.1
78,589	+		GFF89	0.71	-0.4
78,597	+		GFF89	0.72	-0.6
78,602	+		GFF89	0.73	-1.6
78,609	+		GFF89	0.74	+0.9
78,609	+		GFF89	0.74	-0.9
78,609	+		GFF89	0.74	-0.1
78,610	-		GFF89	0.75	-1.1
78,616	+		GFF89	0.76	+0.3
78,616	+		GFF89	0.76	+0.1
78,616	+		GFF89	0.76	+1.2
78,624	-		GFF89	0.77	+0.6
78,633	+		GFF89	0.79	-2.0
78,633	+		GFF89	0.79	-1.4
78,641	-		GFF89	0.81	+0.0
78,667	-		GFF89	0.86	-1.2
78,669	+		GFF89	0.86	+1.4
78,685	-		GFF89	0.89	-0.1
78,685	-		GFF89	0.89	-0.3
78,717	-				-1.4
78,734	+				-0.6
78,742	-				+0.6
78,749	-				-0.7
78,753	-				-0.6
78,753	-				-1.0
78,755	+				-0.1
78,839	+				-0.5
78,955	-		GFF90	0.12	-0.6
78,978	+		GFF90	0.17	-2.2
78,979	-		GFF90	0.17	-2.1
78,979	-		GFF90	0.17	-0.2
78,998	-		GFF90	0.20	+0.0
79,012	-		GFF90	0.23	-1.1
79,015	+		GFF90	0.24	-0.8
79,016	+		GFF90	0.24	-2.4
79,016	+		GFF90	0.24	-0.2
79,023	-		GFF90	0.25	-0.8
79,038	-		GFF90	0.28	+0.9
79,078	+		GFF90	0.36	-0.3
79,078	+		GFF90	0.36	-1.3
79,086	-		GFF90	0.37	-1.9
79,086	-		GFF90	0.37	+1.1
79,091	-		GFF90	0.38	-0.4
79,094	+		GFF90	0.39	+1.4
79,105	-		GFF90	0.41	+0.5
79,127	+		GFF90	0.45	-0.9
79,127	+		GFF90	0.45	-1.1
79,127	+		GFF90	0.45	-0.4
79,127	+		GFF90	0.45	-1.3
79,130	-		GFF90	0.45	-0.6
79,134	+		GFF90	0.46	-0.3
79,135	-		GFF90	0.46	+0.6
79,135	-		GFF90	0.46	-0.2
79,139	+		GFF90	0.47	-2.7
79,147	-		GFF90	0.49	-0.4
79,168	-		GFF90	0.53	+0.3
79,168	-		GFF90	0.53	-0.9
79,178	+		GFF90	0.55	-0.8
79,191	-		GFF90	0.57	-1.5
79,196	-		GFF90	0.58	-1.3
79,221	+		GFF90	0.63	-0.4
79,226	+		GFF90	0.64	+0.2
79,234	-		GFF90	0.65	-0.8
79,281	+		GFF90	0.74	-0.0
79,285	+		GFF90	0.75	+1.3
79,285	+		GFF90	0.75	+0.1
79,286	+		GFF90	0.75	+1.3
79,286	+		GFF90	0.75	-0.9
79,286	+		GFF90	0.75	+1.2
79,286	+		GFF90	0.75	+0.3
79,286	+		GFF90	0.75	+0.2
79,286	+		GFF90	0.75	-0.4
79,286	+		GFF90	0.75	-0.6
79,289	-		GFF90	0.76	-0.8
79,293	-		GFF90	0.76	-0.1
79,294	-		GFF90	0.77	-0.2
79,294	-		GFF90	0.77	-1.0
79,294	-		GFF90	0.77	-1.8
79,294	-		GFF90	0.77	+0.3
79,294	-		GFF90	0.77	+0.6
79,294	-		GFF90	0.77	+0.9
79,294	-		GFF90	0.77	+0.7
79,312	+		GFF90	0.80	+0.0
79,341	+		GFF90	0.85	-1.3
79,345	+		GFF90	0.86	-0.7
79,345	+		GFF90	0.86	-1.1
79,345	+		GFF90	0.86	-2.0
79,345	+		GFF90	0.86	+1.7
79,353	-		GFF90	0.88	-0.4
79,353	-		GFF90	0.88	+0.7
79,353	-		GFF90	0.88	-0.8
79,353	-		GFF90	0.88	-0.4
79,353	-		GFF90	0.88	-0.7
79,353	-		GFF90	0.88	-0.9
79,353	-		GFF90	0.88	+1.3
79,355	-		GFF90	0.88	+1.2
79,364	+		GFF90	0.90	+0.2
79,369	+				-0.9
79,372	-				+0.2
79,372	-				-0.8
79,386	+				-1.3
79,394	+				+1.2
79,394	+				-1.5
79,395	+				-1.3
79,403	-				+0.0
79,403	-				-0.2
79,403	-				-0.0
79,410	+				-0.4
79,414	+				-1.4
79,418	-				+1.2
79,419	+				-0.4
79,427	-				-0.0
79,427	-				-2.0
79,429	+				-0.6
79,432	+				-2.1
79,447	+				-2.3
79,449	+				-1.8
79,462	-				+0.0
79,462	-				+1.2
79,481	-				-2.2
79,492	+				+0.9
79,498	+				-0.7
79,500	-				-2.4
79,505	+				-0.9
79,510	+				-0.7
79,513	-				-0.1
79,513	-				-0.3
79,515	+				+0.2
79,523	-				-0.4
79,523	-				-0.9
79,538	+				-0.8
79,538	+				-0.0
79,538	+				+0.3
79,546	-				+0.1
79,546	-				-1.1
79,554	+				-0.5
79,560	+				-0.1
79,571	-				+0.7
79,574	-				-1.4
79,588	+				-1.4
79,613	-		GFF91	0.11	-1.9
79,628	+		GFF91	0.12	-0.8
79,636	-		GFF91	0.12	+0.0
79,646	+		GFF91	0.13	-0.3
79,646	+		GFF91	0.13	-0.9
79,651	+		GFF91	0.13	-0.8
79,654	-		GFF91	0.13	+0.5
79,654	-		GFF91	0.13	-0.4
79,654	-		GFF91	0.13	-0.5
79,654	-		GFF91	0.13	-1.8
79,654	-		GFF91	0.13	-0.5
79,654	-		GFF91	0.13	+0.7
79,659	-		GFF91	0.14	-0.7
79,659	-		GFF91	0.14	-1.0
79,659	-		GFF91	0.14	-0.4
79,666	+		GFF91	0.14	-0.7
79,689	+		GFF91	0.15	+0.5
79,702	-		GFF91	0.16	+1.5
79,702	-		GFF91	0.16	+1.2
79,712	+		GFF91	0.16	-0.3
79,712	+		GFF91	0.16	-1.3
79,714	-		GFF91	0.17	+0.1
79,717	+		GFF91	0.17	+0.6
79,717	+		GFF91	0.17	-1.4
79,720	-		GFF91	0.17	-2.5
79,725	-		GFF91	0.17	+0.6
79,725	-		GFF91	0.17	+0.3
79,763	-		GFF91	0.19	-0.1
79,763	-		GFF91	0.19	-0.4
79,765	+		GFF91	0.19	+0.2
79,775	+		GFF91	0.20	-1.5
79,798	+		GFF91	0.21	+2.1
79,811	+		GFF91	0.22	-0.4
79,811	+		GFF91	0.22	+0.3
79,811	+		GFF91	0.22	-0.3
79,811	+		GFF91	0.22	-0.5
79,811	+		GFF91	0.22	-0.4
79,811	+		GFF91	0.22	-2.0
79,811	+		GFF91	0.22	-1.1
79,811	+		GFF91	0.22	-0.1
79,811	+		GFF91	0.22	-2.4
79,811	+		GFF91	0.22	+0.3
79,811	+		GFF91	0.22	-0.7
79,811	+		GFF91	0.22	-0.4
79,811	-		GFF91	0.22	+1.0
79,816	+		GFF91	0.22	-0.5
79,816	+		GFF91	0.22	+1.3
79,816	+		GFF91	0.22	-1.9
79,819	-		GFF91	0.22	+0.1
79,819	-		GFF91	0.22	+0.8
79,819	-		GFF91	0.22	-1.7
79,819	-		GFF91	0.22	-0.1
79,819	-		GFF91	0.22	+0.3
79,819	-		GFF91	0.22	+0.5
79,819	-		GFF91	0.22	-0.7
79,819	-		GFF91	0.22	-1.7
79,819	-		GFF91	0.22	-1.4
79,819	-		GFF91	0.22	-1.3
79,819	-		GFF91	0.22	+1.2
79,819	-		GFF91	0.22	-0.5
79,819	-		GFF91	0.22	-1.3
79,819	-		GFF91	0.22	-1.4
79,819	-		GFF91	0.22	-1.6
79,824	-		GFF91	0.23	-0.5
79,838	+		GFF91	0.24	-0.2
79,844	+		GFF91	0.24	-0.3
79,846	-		GFF91	0.24	-1.4
79,846	-		GFF91	0.24	-1.0
79,846	-		GFF91	0.24	+0.6
79,862	-		GFF91	0.25	+0.9
79,869	+		GFF91	0.25	-2.2
79,876	+		GFF91	0.26	+1.2
79,887	-		GFF91	0.26	+0.1
79,887	-		GFF91	0.26	-0.8
79,922	+		GFF91	0.28	+0.5
79,922	+		GFF91	0.28	+0.6
79,922	+		GFF91	0.28	-0.5
79,922	+		GFF91	0.28	-1.0
79,922	+		GFF91	0.28	-0.4
79,922	+		GFF91	0.28	+0.2
79,924	-		GFF91	0.28	-2.1
79,927	+		GFF91	0.29	-0.7
79,930	-		GFF91	0.29	-0.5
79,930	-		GFF91	0.29	+1.7
79,930	-		GFF91	0.29	-0.9
79,930	-		GFF91	0.29	-0.3
79,935	-		GFF91	0.29	-0.7
79,955	+		GFF91	0.30	+0.6
80,030	+		GFF91	0.34	-0.1
80,030	+		GFF91	0.34	+1.3
80,030	+		GFF91	0.34	-0.7
80,030	+		GFF91	0.34	-0.7
80,030	+		GFF91	0.34	-0.3
80,035	+		GFF91	0.35	-0.4
80,038	-		GFF91	0.35	+0.6
80,038	-		GFF91	0.35	+0.8
80,038	-		GFF91	0.35	-1.2
80,052	+		GFF91	0.36	+0.7
80,061	-		GFF91	0.36	+0.4
80,096	+		GFF91	0.38	-2.6
80,104	-		GFF91	0.38	-1.4
80,104	-		GFF91	0.38	-0.5
80,109	+		GFF91	0.39	+0.0
80,114	-		GFF91	0.39	+0.0
80,153	+		GFF91	0.41	-0.8
80,161	-		GFF91	0.42	+0.4
80,181	+		GFF91	0.43	+0.5
80,181	+		GFF91	0.43	-1.6
80,181	+		GFF91	0.43	+0.3
80,189	+		GFF91	0.43	-0.4
80,189	-		GFF91	0.43	-1.7
80,189	-		GFF91	0.43	-1.4
80,189	-		GFF91	0.43	+1.2
80,189	-		GFF91	0.43	+1.1
80,189	-		GFF91	0.43	+1.0
80,189	-		GFF91	0.43	-0.1
80,189	-		GFF91	0.43	+0.0
80,189	-		GFF91	0.43	+0.2
80,189	-		GFF91	0.43	-0.5
80,191	+		GFF91	0.43	+0.8
80,199	-		GFF91	0.44	+0.3
80,200	-		GFF91	0.44	-1.1
80,253	-		GFF91	0.47	-1.1
80,257	+		GFF91	0.47	+0.6
80,260	-		GFF91	0.47	-0.3
80,264	-		GFF91	0.47	-1.6
80,280	+		GFF91	0.48	-1.1
80,280	+		GFF91	0.48	-1.3
80,280	+		GFF91	0.48	-0.4
80,280	-		GFF91	0.48	-1.1
80,288	-		GFF91	0.49	-1.5
80,323	+		GFF91	0.51	-1.4
80,323	+		GFF91	0.51	-0.1
80,332	-		GFF91	0.51	+0.5
80,352	+		GFF91	0.52	-1.1
80,352	+		GFF91	0.52	-0.3
80,352	+		GFF91	0.52	+0.5
80,352	+		GFF91	0.52	-1.1
80,352	+		GFF91	0.52	-2.4
80,352	+		GFF91	0.52	+0.6
80,352	+		GFF91	0.52	-0.4
80,352	+		GFF91	0.52	-1.5
80,357	-		GFF91	0.53	-0.3
80,360	-		GFF91	0.53	-1.5
80,360	-		GFF91	0.53	-1.0
80,360	-		GFF91	0.53	+0.0
80,360	-		GFF91	0.53	-0.2
80,360	-		GFF91	0.53	-0.4
80,360	-		GFF91	0.53	+0.1
80,377	-		GFF91	0.54	+1.3
80,402	+		GFF91	0.55	-1.8