Strain Fitness in Sphingobium sp. HT1-2 around GFF87

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF85 and GFF86 overlap by 4 nucleotidesGFF86 and GFF87 are separated by 133 nucleotidesGFF87 and GFF88 are separated by 7 nucleotides GFF85 - Cytochrome c heme lyase subunit CcmL, at 73,959 to 74,372 GFF85 GFF86 - Cytochrome c heme lyase subunit CcmH, at 74,369 to 75,010 GFF86 GFF87 - Kup system potassium uptake protein, at 75,144 to 77,066 GFF87 GFF88 - Radical SAM domain protein, at 77,074 to 78,141 GFF88 Position (kb) 75 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 74.356 kb on - strandat 74.356 kb on - strandat 74.361 kb on - strandat 74.361 kb on - strandat 74.414 kb on + strandat 74.414 kb on + strandat 74.419 kb on + strandat 74.420 kb on - strandat 74.424 kb on + strandat 74.424 kb on + strandat 74.424 kb on + strandat 74.424 kb on + strandat 74.424 kb on + strandat 74.432 kb on - strandat 74.437 kb on + strand, within GFF86at 74.479 kb on + strand, within GFF86at 74.492 kb on + strand, within GFF86at 74.496 kb on + strand, within GFF86at 74.500 kb on - strand, within GFF86at 74.504 kb on - strand, within GFF86at 74.529 kb on + strand, within GFF86at 74.547 kb on - strand, within GFF86at 74.572 kb on + strand, within GFF86at 74.574 kb on + strand, within GFF86at 74.582 kb on + strand, within GFF86at 74.595 kb on + strand, within GFF86at 74.603 kb on - strand, within GFF86at 74.603 kb on - strand, within GFF86at 74.603 kb on - strand, within GFF86at 74.603 kb on - strand, within GFF86at 74.603 kb on - strand, within GFF86at 74.607 kb on + strand, within GFF86at 74.615 kb on - strand, within GFF86at 74.622 kb on + strand, within GFF86at 74.635 kb on - strand, within GFF86at 74.669 kb on - strand, within GFF86at 74.677 kb on + strand, within GFF86at 74.692 kb on - strand, within GFF86at 74.692 kb on - strand, within GFF86at 74.692 kb on - strand, within GFF86at 74.692 kb on - strand, within GFF86at 74.721 kb on - strand, within GFF86at 74.743 kb on - strand, within GFF86at 74.752 kb on + strand, within GFF86at 74.763 kb on + strand, within GFF86at 74.769 kb on - strand, within GFF86at 74.796 kb on - strand, within GFF86at 74.829 kb on + strand, within GFF86at 74.837 kb on - strand, within GFF86at 74.853 kb on + strand, within GFF86at 74.853 kb on + strand, within GFF86at 74.853 kb on + strand, within GFF86at 74.853 kb on + strand, within GFF86at 74.858 kb on + strand, within GFF86at 74.858 kb on + strand, within GFF86at 74.861 kb on - strand, within GFF86at 74.861 kb on - strand, within GFF86at 74.863 kb on + strand, within GFF86at 74.863 kb on + strand, within GFF86at 74.863 kb on + strand, within GFF86at 74.865 kb on - strand, within GFF86at 74.869 kb on + strand, within GFF86at 74.871 kb on - strand, within GFF86at 74.871 kb on - strand, within GFF86at 74.871 kb on - strand, within GFF86at 74.871 kb on - strand, within GFF86at 74.886 kb on - strand, within GFF86at 74.886 kb on - strand, within GFF86at 74.938 kb on + strand, within GFF86at 74.938 kb on + strand, within GFF86at 74.956 kb on + strandat 74.956 kb on + strandat 74.956 kb on + strandat 74.956 kb on + strandat 74.964 kb on - strandat 74.964 kb on - strandat 75.000 kb on - strandat 75.004 kb on + strandat 75.017 kb on - strandat 75.022 kb on - strandat 75.032 kb on + strandat 75.042 kb on + strandat 75.044 kb on + strandat 75.051 kb on + strandat 75.066 kb on + strandat 75.101 kb on + strandat 75.101 kb on + strandat 75.109 kb on - strandat 75.109 kb on - strandat 75.119 kb on + strandat 77.094 kb on - strandat 77.104 kb on - strandat 77.105 kb on + strandat 77.110 kb on + strandat 77.110 kb on + strandat 77.110 kb on + strandat 77.113 kb on - strandat 77.113 kb on - strandat 77.115 kb on + strandat 77.118 kb on - strandat 77.118 kb on - strandat 77.118 kb on - strandat 77.131 kb on + strandat 77.147 kb on + strandat 77.148 kb on + strandat 77.155 kb on - strandat 77.170 kb on + strandat 77.185 kb on + strand, within GFF88at 77.185 kb on + strand, within GFF88at 77.185 kb on + strand, within GFF88at 77.185 kb on + strand, within GFF88at 77.185 kb on + strand, within GFF88at 77.190 kb on + strand, within GFF88at 77.193 kb on - strand, within GFF88at 77.193 kb on - strand, within GFF88at 77.193 kb on - strand, within GFF88at 77.193 kb on - strand, within GFF88at 77.198 kb on - strand, within GFF88at 77.198 kb on - strand, within GFF88at 77.198 kb on - strand, within GFF88at 77.198 kb on - strand, within GFF88at 77.202 kb on + strand, within GFF88at 77.252 kb on + strand, within GFF88at 77.259 kb on + strand, within GFF88at 77.267 kb on - strand, within GFF88at 77.297 kb on + strand, within GFF88at 77.297 kb on + strand, within GFF88at 77.305 kb on - strand, within GFF88at 77.306 kb on - strand, within GFF88at 77.318 kb on + strand, within GFF88at 77.318 kb on + strand, within GFF88at 77.326 kb on - strand, within GFF88at 77.362 kb on + strand, within GFF88at 77.386 kb on - strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.529 kb on + strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.537 kb on - strand, within GFF88at 77.547 kb on + strand, within GFF88at 77.607 kb on - strand, within GFF88at 77.616 kb on + strand, within GFF88at 77.616 kb on + strand, within GFF88at 77.616 kb on + strand, within GFF88at 77.631 kb on + strand, within GFF88at 77.708 kb on + strand, within GFF88at 77.708 kb on + strand, within GFF88at 77.716 kb on - strand, within GFF88at 77.738 kb on - strand, within GFF88at 77.763 kb on + strand, within GFF88at 77.771 kb on + strand, within GFF88at 77.776 kb on - strand, within GFF88at 77.793 kb on - strand, within GFF88at 77.797 kb on + strand, within GFF88at 77.800 kb on + strand, within GFF88at 77.805 kb on - strand, within GFF88at 77.862 kb on + strand, within GFF88at 77.862 kb on + strand, within GFF88at 77.862 kb on + strand, within GFF88at 77.862 kb on + strand, within GFF88at 77.870 kb on - strand, within GFF88at 77.870 kb on - strand, within GFF88at 77.871 kb on - strand, within GFF88at 77.899 kb on - strand, within GFF88at 77.901 kb on - strand, within GFF88at 77.905 kb on + strand, within GFF88at 77.913 kb on - strand, within GFF88at 77.937 kb on + strand, within GFF88at 77.981 kb on - strand, within GFF88at 77.981 kb on - strand, within GFF88at 77.990 kb on - strand, within GFF88at 78.024 kb on - strand, within GFF88at 78.047 kb on + strandat 78.047 kb on - strandat 78.047 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
74,356 - -2.5
74,356 - -2.5
74,361 - +0.1
74,361 - -0.2
74,414 + -1.9
74,414 + +0.7
74,419 + -0.5
74,420 - -1.6
74,424 + -0.9
74,424 + -1.8
74,424 + -1.0
74,424 + -1.8
74,424 + -0.7
74,432 - -1.1
74,437 + GFF86 0.11 -0.6
74,479 + GFF86 0.17 -1.4
74,492 + GFF86 0.19 -2.0
74,496 + GFF86 0.20 -2.5
74,500 - GFF86 0.20 -1.0
74,504 - GFF86 0.21 -0.7
74,529 + GFF86 0.25 -0.6
74,547 - GFF86 0.28 -0.4
74,572 + GFF86 0.32 +0.5
74,574 + GFF86 0.32 -0.5
74,582 + GFF86 0.33 -0.1
74,595 + GFF86 0.35 -1.0
74,603 - GFF86 0.36 +0.9
74,603 - GFF86 0.36 -1.3
74,603 - GFF86 0.36 +0.6
74,603 - GFF86 0.36 +0.3
74,603 - GFF86 0.36 -1.1
74,607 + GFF86 0.37 -0.5
74,615 - GFF86 0.38 -0.7
74,622 + GFF86 0.39 -0.8
74,635 - GFF86 0.41 +0.0
74,669 - GFF86 0.47 +0.1
74,677 + GFF86 0.48 +0.6
74,692 - GFF86 0.50 +0.1
74,692 - GFF86 0.50 +1.7
74,692 - GFF86 0.50 -1.4
74,692 - GFF86 0.50 -1.7
74,721 - GFF86 0.55 -1.3
74,743 - GFF86 0.58 -1.3
74,752 + GFF86 0.60 -1.1
74,763 + GFF86 0.61 +0.1
74,769 - GFF86 0.62 -1.5
74,796 - GFF86 0.67 -2.1
74,829 + GFF86 0.72 -2.7
74,837 - GFF86 0.73 -1.1
74,853 + GFF86 0.75 -1.4
74,853 + GFF86 0.75 +0.1
74,853 + GFF86 0.75 -0.2
74,853 + GFF86 0.75 -0.6
74,858 + GFF86 0.76 -1.5
74,858 + GFF86 0.76 -0.8
74,861 - GFF86 0.77 -1.1
74,861 - GFF86 0.77 -1.8
74,863 + GFF86 0.77 -0.1
74,863 + GFF86 0.77 -0.5
74,863 + GFF86 0.77 -0.4
74,865 - GFF86 0.77 +1.9
74,869 + GFF86 0.78 -0.5
74,871 - GFF86 0.78 +0.7
74,871 - GFF86 0.78 -1.5
74,871 - GFF86 0.78 -0.9
74,871 - GFF86 0.78 -2.0
74,886 - GFF86 0.81 -1.3
74,886 - GFF86 0.81 +0.9
74,938 + GFF86 0.89 -0.4
74,938 + GFF86 0.89 -0.9
74,956 + -1.5
74,956 + -0.2
74,956 + -0.3
74,956 + +0.2
74,964 - +0.2
74,964 - -0.2
75,000 - -1.6
75,004 + +0.0
75,017 - -0.2
75,022 - -0.2
75,032 + -1.5
75,042 + +0.9
75,044 + -0.5
75,051 + -1.4
75,066 + -1.1
75,101 + -0.1
75,101 + +0.4
75,109 - +0.9
75,109 - -1.1
75,119 + -1.9
77,094 - -0.1
77,104 - -0.5
77,105 + -2.6
77,110 + -0.9
77,110 + +0.2
77,110 + +0.5
77,113 - +1.0
77,113 - -0.4
77,115 + -0.1
77,118 - -0.7
77,118 - -0.1
77,118 - -1.1
77,131 + -0.1
77,147 + +0.4
77,148 + -1.0
77,155 - +0.4
77,170 + +0.5
77,185 + GFF88 0.10 +0.6
77,185 + GFF88 0.10 -1.2
77,185 + GFF88 0.10 +0.3
77,185 + GFF88 0.10 +0.1
77,185 + GFF88 0.10 -0.1
77,190 + GFF88 0.11 -1.0
77,193 - GFF88 0.11 -0.8
77,193 - GFF88 0.11 +0.3
77,193 - GFF88 0.11 -0.3
77,193 - GFF88 0.11 -2.0
77,198 - GFF88 0.12 +0.5
77,198 - GFF88 0.12 -0.7
77,198 - GFF88 0.12 -1.1
77,198 - GFF88 0.12 -1.7
77,202 + GFF88 0.12 -1.3
77,252 + GFF88 0.17 +0.3
77,259 + GFF88 0.17 -0.8
77,267 - GFF88 0.18 -3.0
77,297 + GFF88 0.21 -1.9
77,297 + GFF88 0.21 -1.2
77,305 - GFF88 0.22 -0.2
77,306 - GFF88 0.22 +1.1
77,318 + GFF88 0.23 -0.3
77,318 + GFF88 0.23 -0.9
77,326 - GFF88 0.24 -0.8
77,362 + GFF88 0.27 -1.7
77,386 - GFF88 0.29 -1.1
77,529 + GFF88 0.43 +0.8
77,529 + GFF88 0.43 +0.1
77,529 + GFF88 0.43 -1.1
77,529 + GFF88 0.43 -0.5
77,529 + GFF88 0.43 -0.7
77,529 + GFF88 0.43 -0.4
77,529 + GFF88 0.43 +1.7
77,529 + GFF88 0.43 -1.5
77,529 + GFF88 0.43 -1.3
77,529 + GFF88 0.43 -1.0
77,537 - GFF88 0.43 -1.5
77,537 - GFF88 0.43 -0.6
77,537 - GFF88 0.43 -0.2
77,537 - GFF88 0.43 -0.5
77,537 - GFF88 0.43 +0.2
77,537 - GFF88 0.43 +0.2
77,547 + GFF88 0.44 +0.5
77,607 - GFF88 0.50 -0.4
77,616 + GFF88 0.51 -0.3
77,616 + GFF88 0.51 -0.6
77,616 + GFF88 0.51 +0.9
77,631 + GFF88 0.52 -0.4
77,708 + GFF88 0.59 -0.2
77,708 + GFF88 0.59 +0.0
77,716 - GFF88 0.60 -0.6
77,738 - GFF88 0.62 -0.2
77,763 + GFF88 0.65 -0.4
77,771 + GFF88 0.65 -2.5
77,776 - GFF88 0.66 -0.7
77,793 - GFF88 0.67 +0.4
77,797 + GFF88 0.68 -0.1
77,800 + GFF88 0.68 +1.6
77,805 - GFF88 0.68 +1.2
77,862 + GFF88 0.74 +0.3
77,862 + GFF88 0.74 -1.7
77,862 + GFF88 0.74 +0.1
77,862 + GFF88 0.74 -0.1
77,870 - GFF88 0.75 -0.3
77,870 - GFF88 0.75 +0.3
77,871 - GFF88 0.75 -0.9
77,899 - GFF88 0.77 +0.1
77,901 - GFF88 0.77 -1.6
77,905 + GFF88 0.78 +0.1
77,913 - GFF88 0.79 -1.6
77,937 + GFF88 0.81 +0.5
77,981 - GFF88 0.85 -1.1
77,981 - GFF88 0.85 +0.5
77,990 - GFF88 0.86 -1.6
78,024 - GFF88 0.89 -1.2
78,047 + -0.3
78,047 - +1.0
78,047 - -0.2

Or see this region's nucleotide sequence