Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF806 and GFF807 are separated by 135 nucleotides GFF807 and GFF808 are separated by 179 nucleotides GFF808 and GFF809 are separated by 65 nucleotides
GFF806 - DnaJ-class molecular chaperone CbpA, at 794,740 to 795,660
GFF806
GFF807 - 'Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)' transl_table=11, at 795,796 to 796,371
GFF807
GFF808 - Na+/H+-dicarboxylate symporters, at 796,551 to 797,882
GFF808
GFF809 - hypothetical protein, at 797,948 to 798,832
GFF809
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 795.571 kb on + strand at 795.577 kb on - strand at 795.583 kb on - strand at 795.583 kb on - strand at 795.585 kb on + strand at 795.599 kb on + strand at 795.599 kb on + strand at 795.601 kb on + strand at 795.601 kb on + strand at 795.607 kb on - strand at 795.607 kb on - strand at 795.627 kb on + strand at 795.627 kb on + strand at 795.629 kb on + strand at 795.637 kb on - strand at 795.639 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.663 kb on + strand at 795.669 kb on + strand at 795.669 kb on - strand at 795.669 kb on - strand at 795.671 kb on + strand at 795.674 kb on + strand at 795.682 kb on - strand at 795.682 kb on - strand at 795.710 kb on + strand at 795.710 kb on + strand at 795.710 kb on + strand at 795.729 kb on - strand at 795.729 kb on - strand at 795.729 kb on - strand at 795.745 kb on - strand at 795.757 kb on + strand at 795.757 kb on + strand at 795.760 kb on + strand at 795.764 kb on + strand at 795.767 kb on + strand at 795.767 kb on + strand at 795.767 kb on - strand at 795.781 kb on + strand at 795.789 kb on - strand at 795.792 kb on + strand at 796.392 kb on - strand at 796.392 kb on - strand at 796.392 kb on - strand at 796.412 kb on + strand at 796.434 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.443 kb on - strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.449 kb on + strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.460 kb on + strand at 796.493 kb on + strand at 796.498 kb on + strand at 796.498 kb on + strand at 797.750 kb on + strand at 797.761 kb on + strand at 797.836 kb on + strand at 797.836 kb on + strand at 797.836 kb on + strand at 797.836 kb on + strand at 797.849 kb on - strand at 797.876 kb on + strand at 797.876 kb on + strand at 797.876 kb on + strand at 797.876 kb on + strand at 797.877 kb on + strand at 797.877 kb on + strand at 797.877 kb on + strand at 797.883 kb on + strand at 797.883 kb on + strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.885 kb on - strand at 797.885 kb on - strand at 797.885 kb on - strand at 797.891 kb on + strand at 797.891 kb on + strand at 797.899 kb on - strand at 797.899 kb on - strand at 797.899 kb on - strand at 797.915 kb on + strand at 797.946 kb on + strand at 797.946 kb on + strand at 797.951 kb on + strand at 797.956 kb on + strand at 797.956 kb on + strand at 797.959 kb on - strand at 797.959 kb on - strand at 797.959 kb on - strand at 797.964 kb on - strand at 797.965 kb on + strand at 797.966 kb on - strand at 797.981 kb on + strand at 797.981 kb on + strand at 798.042 kb on + strand, within GFF809 at 798.046 kb on + strand, within GFF809 at 798.061 kb on - strand, within GFF809 at 798.063 kb on - strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.088 kb on - strand, within GFF809 at 798.088 kb on - strand, within GFF809 at 798.088 kb on - strand, within GFF809 at 798.093 kb on - strand, within GFF809 at 798.093 kb on - strand, within GFF809 at 798.124 kb on - strand, within GFF809 at 798.127 kb on + strand, within GFF809 at 798.138 kb on - strand, within GFF809 at 798.145 kb on - strand, within GFF809 at 798.150 kb on + strand, within GFF809 at 798.162 kb on + strand, within GFF809 at 798.170 kb on - strand, within GFF809 at 798.215 kb on + strand, within GFF809 at 798.220 kb on + strand, within GFF809 at 798.244 kb on - strand, within GFF809 at 798.257 kb on - strand, within GFF809 at 798.259 kb on + strand, within GFF809 at 798.259 kb on + strand, within GFF809 at 798.264 kb on + strand, within GFF809 at 798.264 kb on + strand, within GFF809 at 798.272 kb on - strand, within GFF809 at 798.272 kb on - strand, within GFF809 at 798.314 kb on - strand, within GFF809 at 798.322 kb on - strand, within GFF809 at 798.322 kb on - strand, within GFF809 at 798.337 kb on - strand, within GFF809 at 798.337 kb on - strand, within GFF809 at 798.393 kb on + strand, within GFF809 at 798.404 kb on + strand, within GFF809 at 798.411 kb on + strand, within GFF809 at 798.417 kb on + strand, within GFF809 at 798.417 kb on + strand, within GFF809 at 798.419 kb on - strand, within GFF809 at 798.419 kb on - strand, within GFF809 at 798.419 kb on - strand, within GFF809 at 798.425 kb on - strand, within GFF809 at 798.427 kb on - strand, within GFF809 at 798.443 kb on + strand, within GFF809 at 798.448 kb on + strand, within GFF809 at 798.448 kb on - strand, within GFF809 at 798.451 kb on - strand, within GFF809 at 798.452 kb on - strand, within GFF809 at 798.477 kb on + strand, within GFF809 at 798.485 kb on - strand, within GFF809 at 798.514 kb on + strand, within GFF809 at 798.527 kb on - strand, within GFF809 at 798.541 kb on - strand, within GFF809 at 798.541 kb on - strand, within GFF809 at 798.570 kb on + strand, within GFF809 at 798.574 kb on + strand, within GFF809 at 798.574 kb on + strand, within GFF809 at 798.582 kb on - strand, within GFF809 at 798.591 kb on + strand, within GFF809 at 798.591 kb on + strand, within GFF809 at 798.596 kb on + strand, within GFF809 at 798.603 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.637 kb on + strand, within GFF809 at 798.637 kb on + strand, within GFF809 at 798.639 kb on - strand, within GFF809 at 798.642 kb on + strand, within GFF809 at 798.645 kb on - strand, within GFF809 at 798.660 kb on + strand, within GFF809 at 798.660 kb on + strand, within GFF809 at 798.660 kb on - strand, within GFF809 at 798.668 kb on - strand, within GFF809 at 798.668 kb on - strand, within GFF809 at 798.668 kb on - strand, within GFF809 at 798.681 kb on + strand, within GFF809 at 798.710 kb on - strand, within GFF809 at 798.711 kb on + strand, within GFF809 at 798.711 kb on + strand, within GFF809 at 798.727 kb on + strand, within GFF809 at 798.729 kb on - strand, within GFF809 at 798.738 kb on + strand, within GFF809 at 798.750 kb on - strand at 798.755 kb on - strand at 798.756 kb on + strand at 798.760 kb on - strand at 798.760 kb on - strand at 798.760 kb on - strand at 798.764 kb on - strand at 798.764 kb on - strand at 798.787 kb on + strand at 798.787 kb on + strand at 798.795 kb on - strand at 798.795 kb on - strand at 798.795 kb on - strand at 798.807 kb on + strand at 798.808 kb on + strand at 798.813 kb on + strand at 798.839 kb on - strand at 798.874 kb on + strand at 798.876 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 795,571 + -1.3 795,577 - +0.2 795,583 - -0.7 795,583 - -0.0 795,585 + -1.7 795,599 + +1.1 795,599 + +0.7 795,601 + -0.4 795,601 + +1.2 795,607 - -0.4 795,607 - -3.3 795,627 + -0.2 795,627 + +0.4 795,629 + -1.5 795,637 - +0.2 795,639 + +0.2 795,661 + -0.3 795,661 + +0.4 795,663 + -1.1 795,669 + +0.1 795,669 - -1.2 795,669 - -2.7 795,671 + -0.1 795,674 + +1.0 795,682 - -1.1 795,682 - -1.3 795,710 + +0.4 795,710 + -0.5 795,710 + -0.8 795,729 - -1.4 795,729 - -1.2 795,729 - -0.9 795,745 - +0.7 795,757 + -1.6 795,757 + -0.5 795,760 + -1.3 795,764 + +0.7 795,767 + +0.9 795,767 + +0.3 795,767 - +1.0 795,781 + +1.7 795,789 - -1.2 795,792 + +0.1 796,392 - -1.3 796,392 - +1.1 796,392 - -0.8 796,412 + -0.5 796,434 + -1.9 796,435 + +0.0 796,435 + -0.3 796,435 + -0.6 796,435 + -1.4 796,435 + -1.5 796,435 + +0.1 796,443 - -1.1 796,445 + -1.2 796,445 + -1.1 796,445 + -1.0 796,445 + -0.6 796,445 + +0.3 796,445 + +0.6 796,445 + -1.3 796,445 + -0.1 796,445 + -0.0 796,445 + -1.7 796,445 + -0.4 796,445 + -1.1 796,445 + -1.7 796,445 + +0.9 796,445 + -0.6 796,445 + -0.9 796,445 + -1.6 796,445 + -0.3 796,445 + +0.2 796,445 + +0.3 796,445 + -0.2 796,445 + -1.2 796,445 + -1.5 796,445 + +0.2 796,445 + -0.8 796,445 + -0.5 796,445 + -0.5 796,445 + -0.1 796,445 + +0.3 796,445 + +0.1 796,445 + -0.3 796,445 + -0.2 796,445 + -0.2 796,445 + -0.2 796,445 + -1.7 796,445 + -1.7 796,445 + +0.5 796,445 + +1.8 796,445 + -1.6 796,445 + -1.3 796,445 + -1.4 796,445 + -1.2 796,445 + +0.9 796,445 + -1.0 796,445 + -0.5 796,445 + -0.1 796,445 + +0.0 796,445 + +0.3 796,445 + -0.8 796,445 + -1.1 796,445 + -1.1 796,445 + -0.4 796,445 + -0.5 796,445 + +0.8 796,445 + +0.1 796,445 + -0.0 796,445 + -0.0 796,445 + +0.0 796,445 + -1.0 796,445 + -0.4 796,445 + +0.0 796,445 + +1.6 796,445 + +0.5 796,445 + -0.6 796,445 + -0.8 796,445 + -0.1 796,445 + -0.4 796,445 + -0.1 796,445 + +0.1 796,445 + +0.4 796,445 + +0.3 796,445 + +0.8 796,445 + -0.5 796,445 + -0.5 796,445 + -0.3 796,445 + -0.5 796,445 + +0.3 796,445 + +0.3 796,445 + +0.9 796,445 + +0.2 796,449 + +0.8 796,453 - +1.3 796,453 - -1.2 796,453 - -0.5 796,453 - +1.3 796,453 - -1.7 796,453 - -0.1 796,453 - -1.9 796,453 - -0.3 796,453 - -1.3 796,453 - -0.0 796,453 - +1.1 796,453 - +0.4 796,453 - -2.0 796,453 - +0.6 796,453 - +0.9 796,453 - -0.3 796,453 - -0.6 796,453 - -1.9 796,453 - +1.0 796,453 - -0.6 796,453 - +0.2 796,453 - -2.7 796,453 - -2.6 796,453 - +1.1 796,453 - +0.1 796,453 - -0.3 796,453 - +1.1 796,453 - -0.0 796,453 - -0.0 796,453 - -1.3 796,453 - +0.7 796,453 - -1.2 796,453 - -1.8 796,453 - -1.2 796,453 - -1.4 796,453 - +0.5 796,453 - -1.4 796,453 - -1.9 796,453 - +0.5 796,453 - -1.9 796,453 - -1.1 796,453 - -1.5 796,453 - -0.6 796,453 - -2.4 796,453 - +0.6 796,453 - -0.5 796,453 - +2.4 796,453 - -2.1 796,453 - -0.5 796,453 - -2.4 796,453 - -0.3 796,453 - -1.1 796,453 - -1.4 796,460 + +0.4 796,493 + -0.2 796,498 + -2.8 796,498 + +0.3 797,750 + +0.1 797,761 + +0.0 797,836 + -0.1 797,836 + -1.1 797,836 + -1.8 797,836 + -1.7 797,849 - -0.3 797,876 + +1.0 797,876 + +0.1 797,876 + +0.8 797,876 + -0.2 797,877 + -0.7 797,877 + -0.3 797,877 + -0.2 797,883 + -0.4 797,883 + +0.1 797,884 - -1.9 797,884 - -0.1 797,884 - +1.2 797,884 - -0.4 797,884 - +0.7 797,884 - -0.9 797,884 - -2.4 797,885 - -1.1 797,885 - -0.5 797,885 - -0.1 797,891 + +0.8 797,891 + +0.5 797,899 - -0.5 797,899 - -0.2 797,899 - -1.3 797,915 + +0.4 797,946 + +1.3 797,946 + -0.2 797,951 + -1.6 797,956 + -1.2 797,956 + +0.8 797,959 - +0.8 797,959 - +0.3 797,959 - -2.1 797,964 - +0.6 797,965 + -0.4 797,966 - +0.9 797,981 + -0.4 797,981 + -0.4 798,042 + GFF809 0.11 +0.8 798,046 + GFF809 0.11 -1.5 798,061 - GFF809 0.13 -1.9 798,063 - GFF809 0.13 -1.1 798,080 + GFF809 0.15 +0.2 798,080 + GFF809 0.15 +0.4 798,080 + GFF809 0.15 -0.5 798,080 + GFF809 0.15 +0.8 798,088 - GFF809 0.16 +0.9 798,088 - GFF809 0.16 -1.6 798,088 - GFF809 0.16 -3.4 798,093 - GFF809 0.16 +1.1 798,093 - GFF809 0.16 +0.8 798,124 - GFF809 0.20 -1.2 798,127 + GFF809 0.20 +0.3 798,138 - GFF809 0.21 -1.1 798,145 - GFF809 0.22 +0.5 798,150 + GFF809 0.23 -1.6 798,162 + GFF809 0.24 -1.3 798,170 - GFF809 0.25 +1.2 798,215 + GFF809 0.30 -1.5 798,220 + GFF809 0.31 -1.6 798,244 - GFF809 0.33 +0.8 798,257 - GFF809 0.35 +1.0 798,259 + GFF809 0.35 -1.5 798,259 + GFF809 0.35 +0.5 798,264 + GFF809 0.36 -1.6 798,264 + GFF809 0.36 +0.1 798,272 - GFF809 0.37 +0.4 798,272 - GFF809 0.37 -0.5 798,314 - GFF809 0.41 -1.3 798,322 - GFF809 0.42 -0.4 798,322 - GFF809 0.42 -0.8 798,337 - GFF809 0.44 +0.5 798,337 - GFF809 0.44 +0.6 798,393 + GFF809 0.50 +0.1 798,404 + GFF809 0.52 -0.0 798,411 + GFF809 0.52 -0.3 798,417 + GFF809 0.53 -1.2 798,417 + GFF809 0.53 -1.1 798,419 - GFF809 0.53 -1.3 798,419 - GFF809 0.53 -0.7 798,419 - GFF809 0.53 +0.3 798,425 - GFF809 0.54 +0.9 798,427 - GFF809 0.54 +0.5 798,443 + GFF809 0.56 +0.6 798,448 + GFF809 0.56 +0.3 798,448 - GFF809 0.56 -2.1 798,451 - GFF809 0.57 +0.4 798,452 - GFF809 0.57 -0.1 798,477 + GFF809 0.60 -0.7 798,485 - GFF809 0.61 -0.7 798,514 + GFF809 0.64 +0.4 798,527 - GFF809 0.65 -0.9 798,541 - GFF809 0.67 -0.2 798,541 - GFF809 0.67 -1.4 798,570 + GFF809 0.70 -2.2 798,574 + GFF809 0.71 -0.2 798,574 + GFF809 0.71 -1.1 798,582 - GFF809 0.72 -0.2 798,591 + GFF809 0.73 -1.9 798,591 + GFF809 0.73 +0.6 798,596 + GFF809 0.73 +0.3 798,603 + GFF809 0.74 -0.2 798,622 + GFF809 0.76 -0.3 798,622 + GFF809 0.76 -1.3 798,622 + GFF809 0.76 -0.7 798,622 + GFF809 0.76 +0.3 798,622 + GFF809 0.76 -0.9 798,622 + GFF809 0.76 +0.2 798,622 + GFF809 0.76 -0.2 798,630 - GFF809 0.77 +0.3 798,630 - GFF809 0.77 +0.9 798,630 - GFF809 0.77 +0.3 798,630 - GFF809 0.77 -1.8 798,630 - GFF809 0.77 -2.0 798,630 - GFF809 0.77 -0.1 798,630 - GFF809 0.77 -1.4 798,630 - GFF809 0.77 -2.6 798,637 + GFF809 0.78 +0.1 798,637 + GFF809 0.78 +0.3 798,639 - GFF809 0.78 -0.1 798,642 + GFF809 0.78 -1.8 798,645 - GFF809 0.79 +1.2 798,660 + GFF809 0.80 -1.8 798,660 + GFF809 0.80 +0.0 798,660 - GFF809 0.80 +0.4 798,668 - GFF809 0.81 -1.0 798,668 - GFF809 0.81 +0.7 798,668 - GFF809 0.81 -0.9 798,681 + GFF809 0.83 +0.8 798,710 - GFF809 0.86 -1.1 798,711 + GFF809 0.86 -0.9 798,711 + GFF809 0.86 -0.2 798,727 + GFF809 0.88 -0.1 798,729 - GFF809 0.88 +0.5 798,738 + GFF809 0.89 -0.1 798,750 - -1.4 798,755 - +1.3 798,756 + -2.9 798,760 - +0.3 798,760 - +0.6 798,760 - -1.2 798,764 - +0.7 798,764 - +0.3 798,787 + +0.9 798,787 + -0.9 798,795 - +1.5 798,795 - -0.5 798,795 - +0.4 798,807 + -0.4 798,808 + +0.3 798,813 + -1.0 798,839 - +0.2 798,874 + -1.3 798,876 + -1.2
Or see this region's nucleotide sequence