Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF806 and GFF807 are separated by 135 nucleotides GFF807 and GFF808 are separated by 179 nucleotides
GFF806 - DnaJ-class molecular chaperone CbpA, at 794,740 to 795,660
GFF806
GFF807 - 'Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)' transl_table=11, at 795,796 to 796,371
GFF807
GFF808 - Na+/H+-dicarboxylate symporters, at 796,551 to 797,882
GFF808
Position (kb) 795
796
797 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 794.800 kb on - strand at 794.801 kb on - strand at 794.822 kb on + strand at 794.835 kb on - strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.837 kb on + strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.845 kb on - strand, within GFF806 at 794.852 kb on - strand, within GFF806 at 794.854 kb on + strand, within GFF806 at 794.854 kb on + strand, within GFF806 at 794.859 kb on + strand, within GFF806 at 794.859 kb on + strand, within GFF806 at 794.872 kb on + strand, within GFF806 at 794.892 kb on + strand, within GFF806 at 794.893 kb on + strand, within GFF806 at 794.900 kb on + strand, within GFF806 at 794.905 kb on + strand, within GFF806 at 794.908 kb on - strand, within GFF806 at 794.910 kb on + strand, within GFF806 at 794.915 kb on + strand, within GFF806 at 794.918 kb on - strand, within GFF806 at 794.918 kb on - strand, within GFF806 at 794.932 kb on + strand, within GFF806 at 794.937 kb on - strand, within GFF806 at 794.940 kb on - strand, within GFF806 at 794.942 kb on - strand, within GFF806 at 794.942 kb on - strand, within GFF806 at 794.954 kb on + strand, within GFF806 at 794.960 kb on + strand, within GFF806 at 794.968 kb on - strand, within GFF806 at 794.968 kb on - strand, within GFF806 at 794.969 kb on + strand, within GFF806 at 794.974 kb on + strand, within GFF806 at 794.983 kb on - strand, within GFF806 at 794.988 kb on + strand, within GFF806 at 795.040 kb on - strand, within GFF806 at 795.046 kb on - strand, within GFF806 at 795.064 kb on + strand, within GFF806 at 795.065 kb on - strand, within GFF806 at 795.086 kb on - strand, within GFF806 at 795.097 kb on + strand, within GFF806 at 795.097 kb on + strand, within GFF806 at 795.105 kb on - strand, within GFF806 at 795.134 kb on + strand, within GFF806 at 795.141 kb on - strand, within GFF806 at 795.141 kb on - strand, within GFF806 at 795.153 kb on + strand, within GFF806 at 795.153 kb on + strand, within GFF806 at 795.153 kb on + strand, within GFF806 at 795.161 kb on - strand, within GFF806 at 795.161 kb on - strand, within GFF806 at 795.161 kb on - strand, within GFF806 at 795.161 kb on - strand, within GFF806 at 795.174 kb on - strand, within GFF806 at 795.177 kb on + strand, within GFF806 at 795.177 kb on + strand, within GFF806 at 795.177 kb on + strand, within GFF806 at 795.178 kb on + strand, within GFF806 at 795.183 kb on + strand, within GFF806 at 795.183 kb on + strand, within GFF806 at 795.185 kb on + strand, within GFF806 at 795.186 kb on - strand, within GFF806 at 795.191 kb on - strand, within GFF806 at 795.193 kb on - strand, within GFF806 at 795.193 kb on - strand, within GFF806 at 795.193 kb on - strand, within GFF806 at 795.220 kb on + strand, within GFF806 at 795.231 kb on - strand, within GFF806 at 795.242 kb on - strand, within GFF806 at 795.254 kb on + strand, within GFF806 at 795.256 kb on - strand, within GFF806 at 795.286 kb on + strand, within GFF806 at 795.336 kb on - strand, within GFF806 at 795.364 kb on + strand, within GFF806 at 795.420 kb on + strand, within GFF806 at 795.421 kb on + strand, within GFF806 at 795.429 kb on - strand, within GFF806 at 795.455 kb on + strand, within GFF806 at 795.470 kb on + strand, within GFF806 at 795.487 kb on - strand, within GFF806 at 795.487 kb on - strand, within GFF806 at 795.487 kb on - strand, within GFF806 at 795.509 kb on - strand, within GFF806 at 795.509 kb on - strand, within GFF806 at 795.509 kb on - strand, within GFF806 at 795.514 kb on + strand, within GFF806 at 795.514 kb on + strand, within GFF806 at 795.571 kb on + strand at 795.577 kb on - strand at 795.583 kb on - strand at 795.583 kb on - strand at 795.585 kb on + strand at 795.599 kb on + strand at 795.599 kb on + strand at 795.601 kb on + strand at 795.601 kb on + strand at 795.607 kb on - strand at 795.607 kb on - strand at 795.627 kb on + strand at 795.627 kb on + strand at 795.629 kb on + strand at 795.637 kb on - strand at 795.639 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.663 kb on + strand at 795.669 kb on + strand at 795.669 kb on - strand at 795.669 kb on - strand at 795.671 kb on + strand at 795.674 kb on + strand at 795.682 kb on - strand at 795.682 kb on - strand at 795.710 kb on + strand at 795.710 kb on + strand at 795.710 kb on + strand at 795.729 kb on - strand at 795.729 kb on - strand at 795.729 kb on - strand at 795.745 kb on - strand at 795.757 kb on + strand at 795.757 kb on + strand at 795.760 kb on + strand at 795.764 kb on + strand at 795.767 kb on + strand at 795.767 kb on + strand at 795.767 kb on - strand at 795.781 kb on + strand at 795.789 kb on - strand at 795.792 kb on + strand at 796.392 kb on - strand at 796.392 kb on - strand at 796.392 kb on - strand at 796.412 kb on + strand at 796.434 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.435 kb on + strand at 796.443 kb on - strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.445 kb on + strand at 796.449 kb on + strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.453 kb on - strand at 796.460 kb on + strand at 796.493 kb on + strand at 796.498 kb on + strand at 796.498 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 794,800 - +0.2 794,801 - -1.9 794,822 + -1.0 794,835 - GFF806 0.10 +0.8 794,837 + GFF806 0.11 +0.1 794,837 + GFF806 0.11 -0.1 794,837 + GFF806 0.11 -1.4 794,837 + GFF806 0.11 +0.2 794,837 + GFF806 0.11 +1.0 794,837 + GFF806 0.11 -1.0 794,837 + GFF806 0.11 -1.3 794,845 - GFF806 0.11 -0.6 794,845 - GFF806 0.11 +0.2 794,845 - GFF806 0.11 -2.4 794,845 - GFF806 0.11 -0.5 794,845 - GFF806 0.11 -2.0 794,845 - GFF806 0.11 +0.0 794,845 - GFF806 0.11 +0.7 794,852 - GFF806 0.12 -1.3 794,854 + GFF806 0.12 -0.9 794,854 + GFF806 0.12 +0.4 794,859 + GFF806 0.13 -0.7 794,859 + GFF806 0.13 -1.1 794,872 + GFF806 0.14 +0.5 794,892 + GFF806 0.17 +1.1 794,893 + GFF806 0.17 -2.5 794,900 + GFF806 0.17 -0.4 794,905 + GFF806 0.18 +0.4 794,908 - GFF806 0.18 +0.0 794,910 + GFF806 0.18 -0.2 794,915 + GFF806 0.19 -0.3 794,918 - GFF806 0.19 +0.8 794,918 - GFF806 0.19 -1.5 794,932 + GFF806 0.21 +0.5 794,937 - GFF806 0.21 -0.3 794,940 - GFF806 0.22 -0.1 794,942 - GFF806 0.22 +1.0 794,942 - GFF806 0.22 +0.5 794,954 + GFF806 0.23 -0.8 794,960 + GFF806 0.24 -0.7 794,968 - GFF806 0.25 -0.6 794,968 - GFF806 0.25 +0.3 794,969 + GFF806 0.25 -0.5 794,974 + GFF806 0.25 -2.1 794,983 - GFF806 0.26 +0.3 794,988 + GFF806 0.27 -0.1 795,040 - GFF806 0.33 -0.7 795,046 - GFF806 0.33 -0.5 795,064 + GFF806 0.35 -0.6 795,065 - GFF806 0.35 +0.7 795,086 - GFF806 0.38 -1.3 795,097 + GFF806 0.39 -1.2 795,097 + GFF806 0.39 +0.5 795,105 - GFF806 0.40 -0.9 795,134 + GFF806 0.43 -0.6 795,141 - GFF806 0.44 -0.8 795,141 - GFF806 0.44 -0.4 795,153 + GFF806 0.45 +2.3 795,153 + GFF806 0.45 +0.3 795,153 + GFF806 0.45 -0.4 795,161 - GFF806 0.46 -1.2 795,161 - GFF806 0.46 +0.5 795,161 - GFF806 0.46 -0.0 795,161 - GFF806 0.46 -0.1 795,174 - GFF806 0.47 -0.5 795,177 + GFF806 0.47 -0.5 795,177 + GFF806 0.47 -1.3 795,177 + GFF806 0.47 -0.1 795,178 + GFF806 0.48 +0.0 795,183 + GFF806 0.48 +0.9 795,183 + GFF806 0.48 -1.1 795,185 + GFF806 0.48 -0.8 795,186 - GFF806 0.48 -0.4 795,191 - GFF806 0.49 -0.7 795,193 - GFF806 0.49 -0.0 795,193 - GFF806 0.49 -0.4 795,193 - GFF806 0.49 -0.5 795,220 + GFF806 0.52 +0.0 795,231 - GFF806 0.53 +0.3 795,242 - GFF806 0.55 -2.0 795,254 + GFF806 0.56 -0.2 795,256 - GFF806 0.56 -1.0 795,286 + GFF806 0.59 -0.7 795,336 - GFF806 0.65 +1.8 795,364 + GFF806 0.68 -0.8 795,420 + GFF806 0.74 -1.1 795,421 + GFF806 0.74 -1.3 795,429 - GFF806 0.75 +0.6 795,455 + GFF806 0.78 -1.3 795,470 + GFF806 0.79 +1.0 795,487 - GFF806 0.81 -1.0 795,487 - GFF806 0.81 +0.9 795,487 - GFF806 0.81 -0.1 795,509 - GFF806 0.83 -2.8 795,509 - GFF806 0.83 -0.3 795,509 - GFF806 0.83 -1.2 795,514 + GFF806 0.84 -1.2 795,514 + GFF806 0.84 -2.1 795,571 + -1.3 795,577 - +0.2 795,583 - -0.7 795,583 - -0.0 795,585 + -1.7 795,599 + +1.1 795,599 + +0.7 795,601 + -0.4 795,601 + +1.2 795,607 - -0.4 795,607 - -3.3 795,627 + -0.2 795,627 + +0.4 795,629 + -1.5 795,637 - +0.2 795,639 + +0.2 795,661 + -0.3 795,661 + +0.4 795,663 + -1.1 795,669 + +0.1 795,669 - -1.2 795,669 - -2.7 795,671 + -0.1 795,674 + +1.0 795,682 - -1.1 795,682 - -1.3 795,710 + +0.4 795,710 + -0.5 795,710 + -0.8 795,729 - -1.4 795,729 - -1.2 795,729 - -0.9 795,745 - +0.7 795,757 + -1.6 795,757 + -0.5 795,760 + -1.3 795,764 + +0.7 795,767 + +0.9 795,767 + +0.3 795,767 - +1.0 795,781 + +1.7 795,789 - -1.2 795,792 + +0.1 796,392 - -1.3 796,392 - +1.1 796,392 - -0.8 796,412 + -0.5 796,434 + -1.9 796,435 + +0.0 796,435 + -0.3 796,435 + -0.6 796,435 + -1.4 796,435 + -1.5 796,435 + +0.1 796,443 - -1.1 796,445 + -1.2 796,445 + -1.1 796,445 + -1.0 796,445 + -0.6 796,445 + +0.3 796,445 + +0.6 796,445 + -1.3 796,445 + -0.1 796,445 + -0.0 796,445 + -1.7 796,445 + -0.4 796,445 + -1.1 796,445 + -1.7 796,445 + +0.9 796,445 + -0.6 796,445 + -0.9 796,445 + -1.6 796,445 + -0.3 796,445 + +0.2 796,445 + +0.3 796,445 + -0.2 796,445 + -1.2 796,445 + -1.5 796,445 + +0.2 796,445 + -0.8 796,445 + -0.5 796,445 + -0.5 796,445 + -0.1 796,445 + +0.3 796,445 + +0.1 796,445 + -0.3 796,445 + -0.2 796,445 + -0.2 796,445 + -0.2 796,445 + -1.7 796,445 + -1.7 796,445 + +0.5 796,445 + +1.8 796,445 + -1.6 796,445 + -1.3 796,445 + -1.4 796,445 + -1.2 796,445 + +0.9 796,445 + -1.0 796,445 + -0.5 796,445 + -0.1 796,445 + +0.0 796,445 + +0.3 796,445 + -0.8 796,445 + -1.1 796,445 + -1.1 796,445 + -0.4 796,445 + -0.5 796,445 + +0.8 796,445 + +0.1 796,445 + -0.0 796,445 + -0.0 796,445 + +0.0 796,445 + -1.0 796,445 + -0.4 796,445 + +0.0 796,445 + +1.6 796,445 + +0.5 796,445 + -0.6 796,445 + -0.8 796,445 + -0.1 796,445 + -0.4 796,445 + -0.1 796,445 + +0.1 796,445 + +0.4 796,445 + +0.3 796,445 + +0.8 796,445 + -0.5 796,445 + -0.5 796,445 + -0.3 796,445 + -0.5 796,445 + +0.3 796,445 + +0.3 796,445 + +0.9 796,445 + +0.2 796,449 + +0.8 796,453 - +1.3 796,453 - -1.2 796,453 - -0.5 796,453 - +1.3 796,453 - -1.7 796,453 - -0.1 796,453 - -1.9 796,453 - -0.3 796,453 - -1.3 796,453 - -0.0 796,453 - +1.1 796,453 - +0.4 796,453 - -2.0 796,453 - +0.6 796,453 - +0.9 796,453 - -0.3 796,453 - -0.6 796,453 - -1.9 796,453 - +1.0 796,453 - -0.6 796,453 - +0.2 796,453 - -2.7 796,453 - -2.6 796,453 - +1.1 796,453 - +0.1 796,453 - -0.3 796,453 - +1.1 796,453 - -0.0 796,453 - -0.0 796,453 - -1.3 796,453 - +0.7 796,453 - -1.2 796,453 - -1.8 796,453 - -1.2 796,453 - -1.4 796,453 - +0.5 796,453 - -1.4 796,453 - -1.9 796,453 - +0.5 796,453 - -1.9 796,453 - -1.1 796,453 - -1.5 796,453 - -0.6 796,453 - -2.4 796,453 - +0.6 796,453 - -0.5 796,453 - +2.4 796,453 - -2.1 796,453 - -0.5 796,453 - -2.4 796,453 - -0.3 796,453 - -1.1 796,453 - -1.4 796,460 + +0.4 796,493 + -0.2 796,498 + -2.8 796,498 + +0.3
Or see this region's nucleotide sequence