Strain Fitness in Sphingobium sp. HT1-2 around GFF701

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF700 and GFF701 are separated by 108 nucleotidesGFF701 and GFF702 are separated by 34 nucleotidesGFF702 and GFF703 are separated by 12 nucleotidesGFF703 and GFF704 are separated by 51 nucleotides GFF700 - Excinuclease ABC subunit B, at 691,435 to 693,618 GFF700 GFF701 - Toxin HigB, at 693,727 to 694,011 GFF701 GFF702 - Antitoxin HigA, at 694,046 to 694,303 GFF702 GFF703 - hypothetical protein, at 694,316 to 694,627 GFF703 GFF704 - hypothetical protein, at 694,679 to 695,125 GFF704 Position (kb) 693 694 695Strain fitness (log2 ratio) -3 -2 -1 0 1at 692.728 kb on + strand, within GFF700at 692.733 kb on + strand, within GFF700at 692.736 kb on - strand, within GFF700at 692.741 kb on - strand, within GFF700at 692.741 kb on - strand, within GFF700at 692.763 kb on - strand, within GFF700at 692.765 kb on + strand, within GFF700at 692.768 kb on + strand, within GFF700at 692.768 kb on + strand, within GFF700at 692.776 kb on - strand, within GFF700at 692.776 kb on - strand, within GFF700at 692.792 kb on - strand, within GFF700at 692.804 kb on - strand, within GFF700at 692.824 kb on + strand, within GFF700at 692.829 kb on + strand, within GFF700at 692.855 kb on - strand, within GFF700at 692.857 kb on + strand, within GFF700at 692.857 kb on + strand, within GFF700at 692.857 kb on + strand, within GFF700at 692.859 kb on + strand, within GFF700at 692.862 kb on + strand, within GFF700at 692.867 kb on - strand, within GFF700at 692.867 kb on - strand, within GFF700at 692.867 kb on - strand, within GFF700at 692.867 kb on - strand, within GFF700at 692.869 kb on + strand, within GFF700at 692.876 kb on + strand, within GFF700at 692.876 kb on + strand, within GFF700at 692.884 kb on - strand, within GFF700at 692.884 kb on - strand, within GFF700at 692.924 kb on - strand, within GFF700at 692.942 kb on - strand, within GFF700at 692.978 kb on + strand, within GFF700at 692.986 kb on - strand, within GFF700at 692.991 kb on - strand, within GFF700at 692.991 kb on - strand, within GFF700at 693.004 kb on - strand, within GFF700at 693.019 kb on - strand, within GFF700at 693.022 kb on - strand, within GFF700at 693.049 kb on + strand, within GFF700at 693.049 kb on + strand, within GFF700at 693.049 kb on + strand, within GFF700at 693.049 kb on + strand, within GFF700at 693.049 kb on + strand, within GFF700at 693.049 kb on + strand, within GFF700at 693.057 kb on - strand, within GFF700at 693.057 kb on - strand, within GFF700at 693.057 kb on - strand, within GFF700at 693.057 kb on - strand, within GFF700at 693.057 kb on - strand, within GFF700at 693.058 kb on - strand, within GFF700at 693.062 kb on - strand, within GFF700at 693.064 kb on - strand, within GFF700at 693.065 kb on + strand, within GFF700at 693.119 kb on + strand, within GFF700at 693.119 kb on + strand, within GFF700at 693.124 kb on + strand, within GFF700at 693.160 kb on + strand, within GFF700at 693.160 kb on + strand, within GFF700at 693.160 kb on + strand, within GFF700at 693.168 kb on - strand, within GFF700at 693.168 kb on - strand, within GFF700at 693.168 kb on - strand, within GFF700at 693.177 kb on + strand, within GFF700at 693.177 kb on + strand, within GFF700at 693.177 kb on + strand, within GFF700at 693.182 kb on + strand, within GFF700at 693.185 kb on - strand, within GFF700at 693.191 kb on + strand, within GFF700at 693.227 kb on - strand, within GFF700at 693.265 kb on - strand, within GFF700at 693.272 kb on + strand, within GFF700at 693.273 kb on - strand, within GFF700at 693.322 kb on - strand, within GFF700at 693.332 kb on + strand, within GFF700at 693.334 kb on + strand, within GFF700at 693.334 kb on + strand, within GFF700at 693.334 kb on + strand, within GFF700at 693.334 kb on + strand, within GFF700at 693.339 kb on + strand, within GFF700at 693.339 kb on + strand, within GFF700at 693.339 kb on + strand, within GFF700at 693.345 kb on + strand, within GFF700at 693.347 kb on - strand, within GFF700at 693.347 kb on - strand, within GFF700at 693.363 kb on + strand, within GFF700at 693.363 kb on + strand, within GFF700at 693.363 kb on + strand, within GFF700at 693.363 kb on + strand, within GFF700at 693.363 kb on + strand, within GFF700at 693.363 kb on + strand, within GFF700at 693.363 kb on + strand, within GFF700at 693.363 kb on + strand, within GFF700at 693.368 kb on + strand, within GFF700at 693.376 kb on - strand, within GFF700at 693.376 kb on - strand, within GFF700at 693.376 kb on - strand, within GFF700at 693.383 kb on + strand, within GFF700at 693.420 kb on + strandat 693.442 kb on + strandat 693.442 kb on + strandat 693.444 kb on + strandat 693.450 kb on + strandat 693.450 kb on - strandat 693.502 kb on + strandat 693.507 kb on + strandat 693.510 kb on - strandat 693.511 kb on - strandat 693.528 kb on + strandat 693.538 kb on + strandat 693.557 kb on + strandat 693.561 kb on - strandat 693.561 kb on - strandat 693.576 kb on + strandat 693.580 kb on + strandat 693.605 kb on + strandat 693.634 kb on - strandat 693.635 kb on + strandat 693.641 kb on - strandat 693.650 kb on + strandat 693.678 kb on + strandat 693.686 kb on - strandat 693.714 kb on + strandat 693.737 kb on - strandat 693.772 kb on + strand, within GFF701at 693.772 kb on + strand, within GFF701at 693.772 kb on + strand, within GFF701at 693.772 kb on + strand, within GFF701at 693.772 kb on + strand, within GFF701at 693.780 kb on - strand, within GFF701at 693.780 kb on - strand, within GFF701at 693.792 kb on + strand, within GFF701at 693.792 kb on + strand, within GFF701at 693.800 kb on - strand, within GFF701at 693.800 kb on - strand, within GFF701at 693.802 kb on + strand, within GFF701at 693.802 kb on + strand, within GFF701at 693.802 kb on + strand, within GFF701at 693.802 kb on + strand, within GFF701at 693.810 kb on - strand, within GFF701at 693.810 kb on - strand, within GFF701at 693.810 kb on - strand, within GFF701at 693.810 kb on - strand, within GFF701at 693.810 kb on - strand, within GFF701at 693.810 kb on - strand, within GFF701at 693.832 kb on - strand, within GFF701at 693.864 kb on + strand, within GFF701at 693.864 kb on + strand, within GFF701at 693.870 kb on - strand, within GFF701at 693.872 kb on - strand, within GFF701at 693.872 kb on - strand, within GFF701at 693.897 kb on + strand, within GFF701at 693.899 kb on - strand, within GFF701at 693.952 kb on - strand, within GFF701at 693.953 kb on - strand, within GFF701at 693.954 kb on - strand, within GFF701at 693.999 kb on + strandat 694.006 kb on + strandat 694.007 kb on - strandat 694.014 kb on - strandat 694.254 kb on + strand, within GFF702at 694.276 kb on + strand, within GFF702at 694.281 kb on + strandat 694.321 kb on + strandat 694.328 kb on + strandat 694.339 kb on - strandat 694.377 kb on - strand, within GFF703at 694.432 kb on + strand, within GFF703at 694.464 kb on + strand, within GFF703at 694.465 kb on - strand, within GFF703at 694.494 kb on + strand, within GFF703at 694.494 kb on + strand, within GFF703at 694.494 kb on + strand, within GFF703at 694.494 kb on + strand, within GFF703at 694.494 kb on + strand, within GFF703at 694.502 kb on - strand, within GFF703at 694.502 kb on - strand, within GFF703at 694.502 kb on - strand, within GFF703at 694.502 kb on - strand, within GFF703at 694.502 kb on - strand, within GFF703at 694.504 kb on + strand, within GFF703at 694.504 kb on + strand, within GFF703at 694.504 kb on + strand, within GFF703at 694.504 kb on + strand, within GFF703at 694.504 kb on + strand, within GFF703at 694.504 kb on + strand, within GFF703at 694.509 kb on + strand, within GFF703at 694.509 kb on + strand, within GFF703at 694.509 kb on + strand, within GFF703at 694.509 kb on + strand, within GFF703at 694.512 kb on - strand, within GFF703at 694.512 kb on - strand, within GFF703at 694.512 kb on - strand, within GFF703at 694.512 kb on - strand, within GFF703at 694.512 kb on - strand, within GFF703at 694.517 kb on - strand, within GFF703at 694.517 kb on - strand, within GFF703at 694.533 kb on - strand, within GFF703at 694.579 kb on + strand, within GFF703at 694.599 kb on + strandat 694.604 kb on + strandat 694.624 kb on + strandat 694.632 kb on - strandat 694.632 kb on - strandat 694.634 kb on - strandat 694.647 kb on - strandat 694.677 kb on + strandat 694.677 kb on - strandat 694.691 kb on + strandat 694.696 kb on - strandat 694.717 kb on + strandat 694.717 kb on + strandat 694.725 kb on - strand, within GFF704at 694.725 kb on - strand, within GFF704at 694.735 kb on - strand, within GFF704at 694.740 kb on - strand, within GFF704at 694.742 kb on + strand, within GFF704at 694.742 kb on + strand, within GFF704at 694.754 kb on - strand, within GFF704at 694.782 kb on + strand, within GFF704at 694.784 kb on - strand, within GFF704at 694.794 kb on + strand, within GFF704at 694.795 kb on - strand, within GFF704at 694.797 kb on - strand, within GFF704at 694.822 kb on + strand, within GFF704at 694.827 kb on + strand, within GFF704at 694.835 kb on - strand, within GFF704at 694.835 kb on - strand, within GFF704at 694.837 kb on - strand, within GFF704at 694.861 kb on + strand, within GFF704at 694.867 kb on - strand, within GFF704at 694.881 kb on + strand, within GFF704at 694.881 kb on + strand, within GFF704at 694.881 kb on + strand, within GFF704at 694.884 kb on - strand, within GFF704at 694.889 kb on - strand, within GFF704at 694.889 kb on - strand, within GFF704at 694.889 kb on - strand, within GFF704at 694.889 kb on - strand, within GFF704at 694.889 kb on - strand, within GFF704at 694.899 kb on + strand, within GFF704at 694.907 kb on - strand, within GFF704at 694.907 kb on - strand, within GFF704at 694.907 kb on - strand, within GFF704at 694.907 kb on - strand, within GFF704at 694.913 kb on - strand, within GFF704at 694.926 kb on + strand, within GFF704at 694.928 kb on - strand, within GFF704at 694.980 kb on + strand, within GFF704at 694.986 kb on + strand, within GFF704at 694.986 kb on + strand, within GFF704at 694.986 kb on + strand, within GFF704at 694.993 kb on - strand, within GFF704at 694.994 kb on - strand, within GFF704at 695.000 kb on - strand, within GFF704at 695.010 kb on - strand, within GFF704at 695.010 kb on - strand, within GFF704

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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692,728 + GFF700 0.59 -0.6
692,733 + GFF700 0.59 +0.6
692,736 - GFF700 0.60 -0.5
692,741 - GFF700 0.60 -1.5
692,741 - GFF700 0.60 +0.2
692,763 - GFF700 0.61 +1.4
692,765 + GFF700 0.61 -2.0
692,768 + GFF700 0.61 +0.9
692,768 + GFF700 0.61 -0.5
692,776 - GFF700 0.61 +0.4
692,776 - GFF700 0.61 -0.7
692,792 - GFF700 0.62 +0.6
692,804 - GFF700 0.63 -0.2
692,824 + GFF700 0.64 -1.3
692,829 + GFF700 0.64 -1.2
692,855 - GFF700 0.65 -1.1
692,857 + GFF700 0.65 +0.4
692,857 + GFF700 0.65 -1.5
692,857 + GFF700 0.65 +0.7
692,859 + GFF700 0.65 -0.1
692,862 + GFF700 0.65 -1.0
692,867 - GFF700 0.66 -0.0
692,867 - GFF700 0.66 -2.2
692,867 - GFF700 0.66 +0.0
692,867 - GFF700 0.66 -0.1
692,869 + GFF700 0.66 -0.9
692,876 + GFF700 0.66 +0.0
692,876 + GFF700 0.66 -0.1
692,884 - GFF700 0.66 -0.0
692,884 - GFF700 0.66 +0.8
692,924 - GFF700 0.68 -1.0
692,942 - GFF700 0.69 +0.1
692,978 + GFF700 0.71 -1.1
692,986 - GFF700 0.71 +1.2
692,991 - GFF700 0.71 -0.6
692,991 - GFF700 0.71 -1.4
693,004 - GFF700 0.72 -1.0
693,019 - GFF700 0.73 -0.2
693,022 - GFF700 0.73 +0.3
693,049 + GFF700 0.74 -0.4
693,049 + GFF700 0.74 -0.0
693,049 + GFF700 0.74 -0.4
693,049 + GFF700 0.74 +0.5
693,049 + GFF700 0.74 -1.0
693,049 + GFF700 0.74 +1.0
693,057 - GFF700 0.74 +1.1
693,057 - GFF700 0.74 -0.0
693,057 - GFF700 0.74 +0.0
693,057 - GFF700 0.74 +0.7
693,057 - GFF700 0.74 +0.4
693,058 - GFF700 0.74 -1.5
693,062 - GFF700 0.74 -1.5
693,064 - GFF700 0.75 -3.1
693,065 + GFF700 0.75 -0.8
693,119 + GFF700 0.77 +0.8
693,119 + GFF700 0.77 -0.7
693,124 + GFF700 0.77 +1.7
693,160 + GFF700 0.79 +1.4
693,160 + GFF700 0.79 -1.1
693,160 + GFF700 0.79 +0.6
693,168 - GFF700 0.79 +0.0
693,168 - GFF700 0.79 -2.5
693,168 - GFF700 0.79 -0.8
693,177 + GFF700 0.80 -0.4
693,177 + GFF700 0.80 -1.6
693,177 + GFF700 0.80 -2.1
693,182 + GFF700 0.80 +0.7
693,185 - GFF700 0.80 -0.3
693,191 + GFF700 0.80 -0.4
693,227 - GFF700 0.82 +0.8
693,265 - GFF700 0.84 -0.2
693,272 + GFF700 0.84 -2.4
693,273 - GFF700 0.84 -0.9
693,322 - GFF700 0.86 -0.8
693,332 + GFF700 0.87 -1.0
693,334 + GFF700 0.87 -0.7
693,334 + GFF700 0.87 +0.9
693,334 + GFF700 0.87 +0.5
693,334 + GFF700 0.87 -0.4
693,339 + GFF700 0.87 -1.4
693,339 + GFF700 0.87 +0.8
693,339 + GFF700 0.87 -0.1
693,345 + GFF700 0.87 +1.2
693,347 - GFF700 0.88 -0.1
693,347 - GFF700 0.88 +0.3
693,363 + GFF700 0.88 +1.0
693,363 + GFF700 0.88 -0.0
693,363 + GFF700 0.88 +0.5
693,363 + GFF700 0.88 +0.2
693,363 + GFF700 0.88 -0.9
693,363 + GFF700 0.88 -0.2
693,363 + GFF700 0.88 -1.3
693,363 + GFF700 0.88 -0.6
693,368 + GFF700 0.89 -1.0
693,376 - GFF700 0.89 -0.9
693,376 - GFF700 0.89 +1.6
693,376 - GFF700 0.89 -0.5
693,383 + GFF700 0.89 -1.0
693,420 + +0.5
693,442 + -0.4
693,442 + +0.4
693,444 + +0.2
693,450 + -0.0
693,450 - -1.1
693,502 + +0.6
693,507 + -1.2
693,510 - -0.6
693,511 - +0.4
693,528 + -1.7
693,538 + -0.7
693,557 + -1.1
693,561 - -0.2
693,561 - -0.6
693,576 + -1.3
693,580 + +0.4
693,605 + -1.5
693,634 - -0.4
693,635 + +0.7
693,641 - +0.0
693,650 + -0.6
693,678 + -0.0
693,686 - +0.6
693,714 + +0.0
693,737 - +0.3
693,772 + GFF701 0.16 +0.5
693,772 + GFF701 0.16 +0.9
693,772 + GFF701 0.16 -0.5
693,772 + GFF701 0.16 -0.3
693,772 + GFF701 0.16 +0.3
693,780 - GFF701 0.19 -1.2
693,780 - GFF701 0.19 +0.3
693,792 + GFF701 0.23 -0.2
693,792 + GFF701 0.23 +0.3
693,800 - GFF701 0.26 +0.4
693,800 - GFF701 0.26 -1.2
693,802 + GFF701 0.26 -1.8
693,802 + GFF701 0.26 +0.5
693,802 + GFF701 0.26 -0.4
693,802 + GFF701 0.26 +0.2
693,810 - GFF701 0.29 -1.9
693,810 - GFF701 0.29 -0.4
693,810 - GFF701 0.29 -0.2
693,810 - GFF701 0.29 -1.0
693,810 - GFF701 0.29 -0.2
693,810 - GFF701 0.29 -0.2
693,832 - GFF701 0.37 -0.4
693,864 + GFF701 0.48 +0.5
693,864 + GFF701 0.48 -0.3
693,870 - GFF701 0.50 +0.4
693,872 - GFF701 0.51 -1.3
693,872 - GFF701 0.51 +0.7
693,897 + GFF701 0.60 -1.5
693,899 - GFF701 0.60 -0.7
693,952 - GFF701 0.79 -1.4
693,953 - GFF701 0.79 +0.5
693,954 - GFF701 0.80 +0.4
693,999 + -0.7
694,006 + -1.7
694,007 - +0.5
694,014 - -1.8
694,254 + GFF702 0.81 -0.3
694,276 + GFF702 0.89 +0.3
694,281 + -0.4
694,321 + +0.8
694,328 + +0.2
694,339 - +0.8
694,377 - GFF703 0.20 -0.4
694,432 + GFF703 0.37 -2.0
694,464 + GFF703 0.47 -0.4
694,465 - GFF703 0.48 -0.2
694,494 + GFF703 0.57 -0.6
694,494 + GFF703 0.57 +0.5
694,494 + GFF703 0.57 -0.3
694,494 + GFF703 0.57 +0.9
694,494 + GFF703 0.57 +0.0
694,502 - GFF703 0.60 -0.7
694,502 - GFF703 0.60 -1.8
694,502 - GFF703 0.60 +1.4
694,502 - GFF703 0.60 +0.6
694,502 - GFF703 0.60 -1.0
694,504 + GFF703 0.60 +0.9
694,504 + GFF703 0.60 -1.6
694,504 + GFF703 0.60 +1.1
694,504 + GFF703 0.60 +0.5
694,504 + GFF703 0.60 +1.0
694,504 + GFF703 0.60 -1.4
694,509 + GFF703 0.62 -0.3
694,509 + GFF703 0.62 +0.1
694,509 + GFF703 0.62 +0.6
694,509 + GFF703 0.62 -1.0
694,512 - GFF703 0.63 -0.5
694,512 - GFF703 0.63 -0.5
694,512 - GFF703 0.63 -0.2
694,512 - GFF703 0.63 +0.2
694,512 - GFF703 0.63 +0.0
694,517 - GFF703 0.64 +0.3
694,517 - GFF703 0.64 -0.1
694,533 - GFF703 0.70 +0.2
694,579 + GFF703 0.84 +0.7
694,599 + +0.4
694,604 + -1.0
694,624 + -1.6
694,632 - -0.8
694,632 - +0.3
694,634 - -0.4
694,647 - -1.4
694,677 + +0.0
694,677 - +0.7
694,691 + +0.3
694,696 - +0.0
694,717 + +0.1
694,717 + -1.8
694,725 - GFF704 0.10 +0.1
694,725 - GFF704 0.10 -0.2
694,735 - GFF704 0.13 -1.3
694,740 - GFF704 0.14 -0.5
694,742 + GFF704 0.14 -0.9
694,742 + GFF704 0.14 +0.1
694,754 - GFF704 0.17 +0.6
694,782 + GFF704 0.23 +1.4
694,784 - GFF704 0.23 -1.3
694,794 + GFF704 0.26 +0.4
694,795 - GFF704 0.26 -0.6
694,797 - GFF704 0.26 -0.2
694,822 + GFF704 0.32 -0.5
694,827 + GFF704 0.33 +0.1
694,835 - GFF704 0.35 +0.6
694,835 - GFF704 0.35 +0.5
694,837 - GFF704 0.35 -0.7
694,861 + GFF704 0.41 +0.8
694,867 - GFF704 0.42 -1.4
694,881 + GFF704 0.45 -0.4
694,881 + GFF704 0.45 -0.9
694,881 + GFF704 0.45 -1.3
694,884 - GFF704 0.46 +0.9
694,889 - GFF704 0.47 +0.6
694,889 - GFF704 0.47 -0.9
694,889 - GFF704 0.47 -2.5
694,889 - GFF704 0.47 +1.3
694,889 - GFF704 0.47 -1.8
694,899 + GFF704 0.49 -1.1
694,907 - GFF704 0.51 -1.0
694,907 - GFF704 0.51 -1.1
694,907 - GFF704 0.51 -0.2
694,907 - GFF704 0.51 -0.2
694,913 - GFF704 0.52 +0.9
694,926 + GFF704 0.55 -1.3
694,928 - GFF704 0.56 +1.4
694,980 + GFF704 0.67 +0.4
694,986 + GFF704 0.69 +0.9
694,986 + GFF704 0.69 -0.5
694,986 + GFF704 0.69 +1.0
694,993 - GFF704 0.70 -0.2
694,994 - GFF704 0.70 -0.5
695,000 - GFF704 0.72 -0.4
695,010 - GFF704 0.74 -0.1
695,010 - GFF704 0.74 +0.4

Or see this region's nucleotide sequence