Strain Fitness in Sphingobium sp. HT1-2 around GFF680

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF678 and GFF679 are separated by 63 nucleotidesGFF679 and GFF680 are separated by 61 nucleotidesGFF680 and GFF681 are separated by 398 nucleotidesGFF681 and GFF682 are separated by 13 nucleotides GFF678 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 670,187 to 671,239 GFF678 GFF679 - hypothetical protein, at 671,303 to 671,680 GFF679 GFF680 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 671,742 to 673,640 GFF680 GFF681 - Uncharacterized glutathione S-transferase-like protein, at 674,039 to 674,233 GFF681 GFF682 - Uncharacterized glutathione S-transferase-like protein, at 674,247 to 674,903 GFF682 Position (kb) 671 672 673 674Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 671.250 kb on - strandat 671.250 kb on - strandat 671.295 kb on - strandat 671.314 kb on - strandat 671.315 kb on + strandat 671.316 kb on + strandat 671.323 kb on - strandat 671.330 kb on - strandat 671.330 kb on - strandat 671.330 kb on - strandat 671.355 kb on - strand, within GFF679at 671.374 kb on + strand, within GFF679at 671.382 kb on - strand, within GFF679at 671.400 kb on + strand, within GFF679at 671.403 kb on - strand, within GFF679at 671.406 kb on - strand, within GFF679at 671.406 kb on - strand, within GFF679at 671.406 kb on - strand, within GFF679at 671.406 kb on - strand, within GFF679at 671.408 kb on - strand, within GFF679at 671.408 kb on - strand, within GFF679at 671.408 kb on - strand, within GFF679at 671.413 kb on - strand, within GFF679at 671.413 kb on - strand, within GFF679at 671.461 kb on + strand, within GFF679at 671.469 kb on - strand, within GFF679at 671.533 kb on - strand, within GFF679at 671.539 kb on - strand, within GFF679at 671.556 kb on - strand, within GFF679at 671.580 kb on + strand, within GFF679at 671.580 kb on + strand, within GFF679at 671.583 kb on - strand, within GFF679at 671.588 kb on - strand, within GFF679at 671.629 kb on - strand, within GFF679at 671.629 kb on - strand, within GFF679at 671.630 kb on - strand, within GFF679at 671.633 kb on + strand, within GFF679at 671.636 kb on - strand, within GFF679at 671.643 kb on + strandat 671.677 kb on + strandat 671.682 kb on + strandat 671.683 kb on + strandat 671.683 kb on + strandat 671.685 kb on - strandat 671.689 kb on + strandat 671.690 kb on - strandat 671.690 kb on - strandat 671.691 kb on - strandat 671.715 kb on - strandat 671.715 kb on - strandat 671.726 kb on - strandat 671.733 kb on + strandat 671.741 kb on - strandat 671.741 kb on - strandat 673.757 kb on - strandat 673.757 kb on - strandat 673.782 kb on - strandat 673.782 kb on - strandat 673.825 kb on + strandat 673.859 kb on - strandat 673.871 kb on - strandat 673.949 kb on - strandat 673.969 kb on + strandat 673.986 kb on - strandat 673.988 kb on + strandat 673.989 kb on - strandat 673.989 kb on - strandat 673.991 kb on - strandat 673.991 kb on - strandat 673.991 kb on - strandat 673.996 kb on - strandat 674.005 kb on + strandat 674.007 kb on + strandat 674.013 kb on - strandat 674.024 kb on + strandat 674.109 kb on + strand, within GFF681at 674.109 kb on + strand, within GFF681at 674.117 kb on - strand, within GFF681at 674.117 kb on - strand, within GFF681at 674.117 kb on - strand, within GFF681at 674.141 kb on - strand, within GFF681at 674.141 kb on - strand, within GFF681at 674.154 kb on + strand, within GFF681at 674.169 kb on - strand, within GFF681at 674.171 kb on + strand, within GFF681at 674.171 kb on + strand, within GFF681at 674.179 kb on - strand, within GFF681at 674.179 kb on - strand, within GFF681at 674.198 kb on - strand, within GFF681at 674.203 kb on - strand, within GFF681at 674.222 kb on - strandat 674.224 kb on + strandat 674.224 kb on + strandat 674.224 kb on + strandat 674.224 kb on + strandat 674.224 kb on + strandat 674.224 kb on + strandat 674.232 kb on - strandat 674.244 kb on + strandat 674.244 kb on + strandat 674.252 kb on - strandat 674.252 kb on - strandat 674.262 kb on - strandat 674.263 kb on - strandat 674.265 kb on + strandat 674.265 kb on + strandat 674.268 kb on - strandat 674.280 kb on - strandat 674.289 kb on + strandat 674.289 kb on + strandat 674.289 kb on + strandat 674.289 kb on - strandat 674.313 kb on + strand, within GFF682at 674.318 kb on + strand, within GFF682at 674.320 kb on + strand, within GFF682at 674.328 kb on - strand, within GFF682at 674.347 kb on + strand, within GFF682at 674.410 kb on - strand, within GFF682at 674.410 kb on - strand, within GFF682at 674.428 kb on + strand, within GFF682at 674.462 kb on - strand, within GFF682at 674.465 kb on + strand, within GFF682at 674.465 kb on + strand, within GFF682at 674.467 kb on - strand, within GFF682at 674.471 kb on + strand, within GFF682at 674.479 kb on + strand, within GFF682at 674.479 kb on + strand, within GFF682at 674.487 kb on - strand, within GFF682at 674.497 kb on - strand, within GFF682at 674.538 kb on - strand, within GFF682at 674.602 kb on - strand, within GFF682at 674.608 kb on - strand, within GFF682at 674.640 kb on + strand, within GFF682

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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671,250 - -0.6
671,250 - +1.5
671,295 - +1.0
671,314 - -2.2
671,315 + +0.4
671,316 + -2.0
671,323 - +0.2
671,330 - -0.2
671,330 - +0.4
671,330 - -0.5
671,355 - GFF679 0.14 -0.7
671,374 + GFF679 0.19 +1.4
671,382 - GFF679 0.21 +0.0
671,400 + GFF679 0.26 +0.4
671,403 - GFF679 0.26 -0.7
671,406 - GFF679 0.27 -2.6
671,406 - GFF679 0.27 -0.1
671,406 - GFF679 0.27 +0.7
671,406 - GFF679 0.27 -0.9
671,408 - GFF679 0.28 -1.9
671,408 - GFF679 0.28 +0.4
671,408 - GFF679 0.28 -2.0
671,413 - GFF679 0.29 +0.7
671,413 - GFF679 0.29 +0.7
671,461 + GFF679 0.42 +0.1
671,469 - GFF679 0.44 -1.5
671,533 - GFF679 0.61 -0.4
671,539 - GFF679 0.62 +0.7
671,556 - GFF679 0.67 -0.5
671,580 + GFF679 0.73 +0.8
671,580 + GFF679 0.73 +0.8
671,583 - GFF679 0.74 -2.0
671,588 - GFF679 0.75 +1.4
671,629 - GFF679 0.86 -0.5
671,629 - GFF679 0.86 -1.3
671,630 - GFF679 0.87 +0.4
671,633 + GFF679 0.87 +0.9
671,636 - GFF679 0.88 +0.8
671,643 + -1.5
671,677 + +0.9
671,682 + -2.4
671,683 + -1.1
671,683 + -1.2
671,685 - +1.4
671,689 + -0.7
671,690 - -3.0
671,690 - -0.2
671,691 - -1.2
671,715 - -0.4
671,715 - +0.2
671,726 - -1.8
671,733 + +1.3
671,741 - +0.0
671,741 - -1.7
673,757 - +0.8
673,757 - -0.6
673,782 - +0.8
673,782 - +0.5
673,825 + +0.4
673,859 - -0.4
673,871 - -1.1
673,949 - -0.6
673,969 + -1.3
673,986 - +0.9
673,988 + -0.5
673,989 - +0.2
673,989 - -0.7
673,991 - -0.1
673,991 - +1.3
673,991 - -0.3
673,996 - +0.3
674,005 + +0.4
674,007 + +0.3
674,013 - -0.2
674,024 + +0.4
674,109 + GFF681 0.36 -1.1
674,109 + GFF681 0.36 -0.6
674,117 - GFF681 0.40 -0.9
674,117 - GFF681 0.40 +0.8
674,117 - GFF681 0.40 +1.2
674,141 - GFF681 0.52 +1.0
674,141 - GFF681 0.52 -0.6
674,154 + GFF681 0.59 -0.3
674,169 - GFF681 0.67 +1.4
674,171 + GFF681 0.68 -1.6
674,171 + GFF681 0.68 -1.4
674,179 - GFF681 0.72 -0.9
674,179 - GFF681 0.72 -2.3
674,198 - GFF681 0.82 -1.5
674,203 - GFF681 0.84 +1.0
674,222 - -2.2
674,224 + +0.5
674,224 + -0.1
674,224 + -0.8
674,224 + -1.9
674,224 + -0.1
674,224 + +0.7
674,232 - -0.3
674,244 + -0.6
674,244 + -0.1
674,252 - -1.1
674,252 - -1.2
674,262 - -0.2
674,263 - -1.1
674,265 + -0.0
674,265 + -1.0
674,268 - -0.2
674,280 - -1.2
674,289 + +1.4
674,289 + +0.5
674,289 + +0.0
674,289 - -0.0
674,313 + GFF682 0.10 -1.2
674,318 + GFF682 0.11 -1.3
674,320 + GFF682 0.11 +0.5
674,328 - GFF682 0.12 -1.0
674,347 + GFF682 0.15 +2.4
674,410 - GFF682 0.25 -0.4
674,410 - GFF682 0.25 -0.1
674,428 + GFF682 0.28 +0.9
674,462 - GFF682 0.33 +0.3
674,465 + GFF682 0.33 +0.3
674,465 + GFF682 0.33 +0.4
674,467 - GFF682 0.33 -1.2
674,471 + GFF682 0.34 -0.6
674,479 + GFF682 0.35 +0.3
674,479 + GFF682 0.35 +0.5
674,487 - GFF682 0.37 -0.7
674,497 - GFF682 0.38 +0.6
674,538 - GFF682 0.44 -0.1
674,602 - GFF682 0.54 -0.9
674,608 - GFF682 0.55 +1.2
674,640 + GFF682 0.60 +0.2

Or see this region's nucleotide sequence