Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF659 and GFF660 are separated by 2 nucleotides GFF660 and GFF661 are separated by 6 nucleotides GFF661 and GFF662 are separated by 82 nucleotides GFF662 and GFF663 are separated by 125 nucleotides
GFF659 - Phosphohistidine phosphatase SixA, at 658,973 to 659,515
GFF659
GFF660 - Acetyltransferase, GNAT family, at 659,518 to 660,042
GFF660
GFF661 - Transcriptional regulator PA2737, MerR family, at 660,049 to 660,393
GFF661
GFF662 - Integration host factor alpha subunit, at 660,476 to 660,772
GFF662
GFF663 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 660,898 to 661,863
GFF663
Position (kb) 660
661 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 659.075 kb on + strand, within GFF659 at 659.077 kb on + strand, within GFF659 at 659.105 kb on + strand, within GFF659 at 659.113 kb on - strand, within GFF659 at 659.133 kb on + strand, within GFF659 at 659.231 kb on + strand, within GFF659 at 659.231 kb on + strand, within GFF659 at 659.231 kb on + strand, within GFF659 at 659.272 kb on + strand, within GFF659 at 659.292 kb on - strand, within GFF659 at 659.302 kb on - strand, within GFF659 at 659.323 kb on - strand, within GFF659 at 659.331 kb on - strand, within GFF659 at 659.334 kb on + strand, within GFF659 at 659.340 kb on - strand, within GFF659 at 659.340 kb on - strand, within GFF659 at 659.374 kb on - strand, within GFF659 at 659.423 kb on - strand, within GFF659 at 659.428 kb on - strand, within GFF659 at 659.446 kb on + strand, within GFF659 at 659.446 kb on + strand, within GFF659 at 659.456 kb on + strand, within GFF659 at 659.456 kb on + strand, within GFF659 at 659.522 kb on - strand at 659.522 kb on - strand at 659.522 kb on - strand at 659.533 kb on - strand at 659.535 kb on - strand at 659.553 kb on - strand at 659.583 kb on - strand, within GFF660 at 659.603 kb on + strand, within GFF660 at 659.603 kb on + strand, within GFF660 at 659.608 kb on + strand, within GFF660 at 659.608 kb on + strand, within GFF660 at 659.626 kb on - strand, within GFF660 at 659.665 kb on + strand, within GFF660 at 659.667 kb on + strand, within GFF660 at 659.667 kb on + strand, within GFF660 at 659.704 kb on + strand, within GFF660 at 659.708 kb on - strand, within GFF660 at 659.712 kb on - strand, within GFF660 at 659.730 kb on - strand, within GFF660 at 659.734 kb on + strand, within GFF660 at 659.739 kb on + strand, within GFF660 at 659.741 kb on + strand, within GFF660 at 659.749 kb on - strand, within GFF660 at 659.749 kb on - strand, within GFF660 at 659.754 kb on - strand, within GFF660 at 659.859 kb on + strand, within GFF660 at 659.872 kb on - strand, within GFF660 at 659.940 kb on - strand, within GFF660 at 659.956 kb on + strand, within GFF660 at 659.957 kb on + strand, within GFF660 at 659.987 kb on + strand, within GFF660 at 660.012 kb on - strand at 660.017 kb on + strand at 660.037 kb on + strand at 660.055 kb on + strand at 660.081 kb on + strand at 660.206 kb on - strand, within GFF661 at 660.211 kb on - strand, within GFF661 at 660.211 kb on - strand, within GFF661 at 660.248 kb on + strand, within GFF661 at 660.257 kb on - strand, within GFF661 at 660.401 kb on + strand at 660.479 kb on + strand at 660.479 kb on + strand at 660.484 kb on + strand at 660.749 kb on + strand at 660.749 kb on + strand at 660.762 kb on + strand at 660.779 kb on + strand at 660.795 kb on - strand at 660.803 kb on - strand at 660.803 kb on - strand at 660.818 kb on - strand at 660.818 kb on - strand at 660.818 kb on - strand at 660.862 kb on + strand at 660.870 kb on - strand at 660.870 kb on - strand at 660.870 kb on - strand at 660.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 659,075 + GFF659 0.19 -1.8 659,077 + GFF659 0.19 -0.8 659,105 + GFF659 0.24 -1.9 659,113 - GFF659 0.26 -1.9 659,133 + GFF659 0.29 -0.7 659,231 + GFF659 0.48 -1.1 659,231 + GFF659 0.48 -0.1 659,231 + GFF659 0.48 -1.5 659,272 + GFF659 0.55 +0.0 659,292 - GFF659 0.59 +0.4 659,302 - GFF659 0.61 -0.2 659,323 - GFF659 0.64 -0.6 659,331 - GFF659 0.66 -0.8 659,334 + GFF659 0.66 -0.9 659,340 - GFF659 0.68 -0.5 659,340 - GFF659 0.68 +0.6 659,374 - GFF659 0.74 -0.3 659,423 - GFF659 0.83 -0.8 659,428 - GFF659 0.84 -1.3 659,446 + GFF659 0.87 -0.8 659,446 + GFF659 0.87 -0.7 659,456 + GFF659 0.89 -1.1 659,456 + GFF659 0.89 -2.8 659,522 - +0.1 659,522 - -0.2 659,522 - +0.0 659,533 - +1.4 659,535 - +1.3 659,553 - -1.8 659,583 - GFF660 0.12 +1.4 659,603 + GFF660 0.16 -0.5 659,603 + GFF660 0.16 -0.1 659,608 + GFF660 0.17 +1.0 659,608 + GFF660 0.17 -0.6 659,626 - GFF660 0.21 +1.4 659,665 + GFF660 0.28 +0.8 659,667 + GFF660 0.28 -0.3 659,667 + GFF660 0.28 -1.6 659,704 + GFF660 0.35 +0.2 659,708 - GFF660 0.36 -0.8 659,712 - GFF660 0.37 -0.2 659,730 - GFF660 0.40 +0.2 659,734 + GFF660 0.41 +0.3 659,739 + GFF660 0.42 +2.1 659,741 + GFF660 0.42 -0.2 659,749 - GFF660 0.44 +0.7 659,749 - GFF660 0.44 +0.4 659,754 - GFF660 0.45 +0.4 659,859 + GFF660 0.65 -0.8 659,872 - GFF660 0.67 -1.7 659,940 - GFF660 0.80 +1.1 659,956 + GFF660 0.83 -0.3 659,957 + GFF660 0.84 +0.0 659,987 + GFF660 0.89 +0.2 660,012 - +0.8 660,017 + -1.1 660,037 + -1.0 660,055 + +1.1 660,081 + +0.5 660,206 - GFF661 0.46 +0.9 660,211 - GFF661 0.47 +0.7 660,211 - GFF661 0.47 +0.1 660,248 + GFF661 0.58 -1.6 660,257 - GFF661 0.60 -0.1 660,401 + +0.2 660,479 + -0.5 660,479 + +1.5 660,484 + +0.6 660,749 + +2.2 660,749 + +0.7 660,762 + +1.2 660,779 + -0.3 660,795 - -0.2 660,803 - +1.3 660,803 - +0.0 660,818 - +0.3 660,818 - -0.2 660,818 - -0.9 660,862 + -2.8 660,870 - -1.8 660,870 - -0.9 660,870 - -0.3 660,875 - +0.7
Or see this region's nucleotide sequence