Strain Fitness in Sphingobium sp. HT1-2 around GFF656

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF654 and GFF655 are separated by 173 nucleotidesGFF655 and GFF656 are separated by 187 nucleotidesGFF656 and GFF657 are separated by 131 nucleotidesGFF657 and GFF658 are separated by 49 nucleotides GFF654 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 652,486 to 653,163 GFF654 GFF655 - hypothetical protein, at 653,337 to 653,807 GFF655 GFF656 - Lysyl-tRNA synthetase (class I) (EC 6.1.1.6), at 653,995 to 655,575 GFF656 GFF657 - hypothetical protein, at 655,707 to 656,078 GFF657 GFF658 - DinG family ATP-dependent helicase YoaA, at 656,128 to 658,881 GFF658 Position (kb) 653 654 655 656Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 653.032 kb on + strand, within GFF654at 653.035 kb on - strand, within GFF654at 653.038 kb on + strand, within GFF654at 653.048 kb on + strand, within GFF654at 653.050 kb on - strand, within GFF654at 653.057 kb on - strand, within GFF654at 653.073 kb on + strand, within GFF654at 653.073 kb on + strand, within GFF654at 653.073 kb on + strand, within GFF654at 653.073 kb on + strand, within GFF654at 653.075 kb on + strand, within GFF654at 653.075 kb on + strand, within GFF654at 653.075 kb on + strand, within GFF654at 653.075 kb on + strand, within GFF654at 653.075 kb on + strand, within GFF654at 653.081 kb on - strand, within GFF654at 653.081 kb on - strand, within GFF654at 653.081 kb on - strand, within GFF654at 653.081 kb on - strand, within GFF654at 653.081 kb on - strand, within GFF654at 653.081 kb on - strand, within GFF654at 653.081 kb on - strand, within GFF654at 653.083 kb on - strand, within GFF654at 653.083 kb on - strand, within GFF654at 653.083 kb on - strand, within GFF654at 653.083 kb on - strand, within GFF654at 653.083 kb on - strand, within GFF654at 653.083 kb on - strand, within GFF654at 653.083 kb on - strand, within GFF654at 653.083 kb on - strand, within GFF654at 653.090 kb on - strand, within GFF654at 653.148 kb on + strandat 653.148 kb on + strandat 653.156 kb on - strandat 653.156 kb on - strandat 653.156 kb on - strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.180 kb on + strandat 653.186 kb on - strandat 653.188 kb on - strandat 653.188 kb on - strandat 653.188 kb on - strandat 653.188 kb on - strandat 653.188 kb on - strandat 653.208 kb on + strandat 653.208 kb on + strandat 653.208 kb on + strandat 653.208 kb on + strandat 653.216 kb on - strandat 653.216 kb on - strandat 653.216 kb on - strandat 653.216 kb on - strandat 653.216 kb on - strandat 653.282 kb on - strandat 653.294 kb on + strandat 653.346 kb on + strandat 653.353 kb on + strandat 653.353 kb on + strandat 653.367 kb on - strandat 653.376 kb on + strandat 653.384 kb on - strand, within GFF655at 653.384 kb on - strand, within GFF655at 653.397 kb on + strand, within GFF655at 653.405 kb on - strand, within GFF655at 653.405 kb on - strand, within GFF655at 653.410 kb on - strand, within GFF655at 653.436 kb on - strand, within GFF655at 653.440 kb on + strand, within GFF655at 653.440 kb on + strand, within GFF655at 653.443 kb on - strand, within GFF655at 653.445 kb on + strand, within GFF655at 653.446 kb on - strand, within GFF655at 653.453 kb on - strand, within GFF655at 653.453 kb on - strand, within GFF655at 653.453 kb on - strand, within GFF655at 653.461 kb on + strand, within GFF655at 653.466 kb on + strand, within GFF655at 653.466 kb on + strand, within GFF655at 653.466 kb on + strand, within GFF655at 653.466 kb on + strand, within GFF655at 653.466 kb on + strand, within GFF655at 653.466 kb on + strand, within GFF655at 653.469 kb on - strand, within GFF655at 653.471 kb on + strand, within GFF655at 653.471 kb on + strand, within GFF655at 653.471 kb on + strand, within GFF655at 653.471 kb on + strand, within GFF655at 653.471 kb on + strand, within GFF655at 653.474 kb on - strand, within GFF655at 653.474 kb on - strand, within GFF655at 653.474 kb on - strand, within GFF655at 653.474 kb on - strand, within GFF655at 653.474 kb on - strand, within GFF655at 653.474 kb on - strand, within GFF655at 653.479 kb on - strand, within GFF655at 653.479 kb on - strand, within GFF655at 653.479 kb on - strand, within GFF655at 653.479 kb on - strand, within GFF655at 653.479 kb on - strand, within GFF655at 653.484 kb on - strand, within GFF655at 653.496 kb on + strand, within GFF655at 653.514 kb on - strand, within GFF655at 653.522 kb on - strand, within GFF655at 653.522 kb on - strand, within GFF655at 653.548 kb on + strand, within GFF655at 653.552 kb on + strand, within GFF655at 653.552 kb on + strand, within GFF655at 653.594 kb on + strand, within GFF655at 653.604 kb on - strand, within GFF655at 653.649 kb on + strand, within GFF655at 653.653 kb on + strand, within GFF655at 653.653 kb on + strand, within GFF655at 653.657 kb on - strand, within GFF655at 653.657 kb on - strand, within GFF655at 653.661 kb on - strand, within GFF655at 653.661 kb on - strand, within GFF655at 653.661 kb on - strand, within GFF655at 653.674 kb on - strand, within GFF655at 653.694 kb on + strand, within GFF655at 653.694 kb on + strand, within GFF655at 653.694 kb on + strand, within GFF655at 653.694 kb on + strand, within GFF655at 653.694 kb on + strand, within GFF655at 653.702 kb on - strand, within GFF655at 653.702 kb on - strand, within GFF655at 653.702 kb on - strand, within GFF655at 653.702 kb on - strand, within GFF655at 653.728 kb on - strand, within GFF655at 653.728 kb on - strand, within GFF655at 653.728 kb on - strand, within GFF655at 653.743 kb on - strand, within GFF655at 653.750 kb on - strand, within GFF655at 653.751 kb on - strand, within GFF655at 653.774 kb on + strandat 653.774 kb on + strandat 653.777 kb on - strandat 653.782 kb on - strandat 653.830 kb on + strandat 653.838 kb on - strandat 653.845 kb on + strandat 653.845 kb on + strandat 653.853 kb on - strandat 653.853 kb on - strandat 653.864 kb on - strandat 653.865 kb on + strandat 653.872 kb on - strandat 653.937 kb on + strandat 653.937 kb on + strandat 653.945 kb on - strandat 655.585 kb on + strandat 655.664 kb on + strandat 655.670 kb on + strandat 655.672 kb on - strandat 655.678 kb on - strandat 655.684 kb on + strandat 655.690 kb on + strandat 655.692 kb on - strandat 655.692 kb on - strandat 655.698 kb on - strandat 655.701 kb on + strandat 655.704 kb on + strandat 655.712 kb on + strandat 655.712 kb on - strandat 655.716 kb on + strandat 655.724 kb on - strandat 655.767 kb on + strand, within GFF657at 655.767 kb on + strand, within GFF657at 655.775 kb on - strand, within GFF657at 655.775 kb on - strand, within GFF657at 655.775 kb on - strand, within GFF657at 655.775 kb on - strand, within GFF657at 655.775 kb on - strand, within GFF657at 655.777 kb on + strand, within GFF657at 655.777 kb on + strand, within GFF657at 655.777 kb on + strand, within GFF657at 655.785 kb on - strand, within GFF657at 655.785 kb on - strand, within GFF657at 655.821 kb on + strand, within GFF657at 655.821 kb on + strand, within GFF657at 655.821 kb on + strand, within GFF657at 655.843 kb on + strand, within GFF657at 655.859 kb on + strand, within GFF657at 655.873 kb on + strand, within GFF657at 655.873 kb on + strand, within GFF657at 655.873 kb on + strand, within GFF657at 655.873 kb on + strand, within GFF657at 655.880 kb on - strand, within GFF657at 655.881 kb on - strand, within GFF657at 655.883 kb on + strand, within GFF657at 655.891 kb on - strand, within GFF657at 655.891 kb on - strand, within GFF657at 655.891 kb on - strand, within GFF657at 655.900 kb on + strand, within GFF657at 655.900 kb on + strand, within GFF657at 655.900 kb on + strand, within GFF657at 655.900 kb on + strand, within GFF657at 655.900 kb on + strand, within GFF657at 655.900 kb on + strand, within GFF657at 655.900 kb on + strand, within GFF657at 655.900 kb on + strand, within GFF657at 655.908 kb on - strand, within GFF657at 655.908 kb on - strand, within GFF657at 655.908 kb on - strand, within GFF657at 655.910 kb on + strand, within GFF657at 655.910 kb on + strand, within GFF657at 655.913 kb on - strand, within GFF657at 655.933 kb on + strand, within GFF657at 655.933 kb on + strand, within GFF657at 655.941 kb on - strand, within GFF657at 655.941 kb on - strand, within GFF657at 655.941 kb on - strand, within GFF657at 655.941 kb on - strand, within GFF657at 655.941 kb on - strand, within GFF657at 655.946 kb on - strand, within GFF657at 655.967 kb on + strand, within GFF657at 655.967 kb on + strand, within GFF657at 655.975 kb on - strand, within GFF657at 655.975 kb on - strand, within GFF657at 656.039 kb on - strand, within GFF657at 656.041 kb on + strandat 656.041 kb on + strandat 656.044 kb on - strandat 656.049 kb on - strandat 656.107 kb on + strandat 656.112 kb on + strandat 656.120 kb on - strandat 656.120 kb on - strandat 656.120 kb on - strandat 656.120 kb on - strandat 656.120 kb on - strandat 656.120 kb on - strandat 656.130 kb on + strandat 656.143 kb on + strandat 656.143 kb on + strandat 656.151 kb on - strandat 656.151 kb on - strandat 656.161 kb on - strandat 656.167 kb on - strandat 656.174 kb on + strandat 656.174 kb on + strandat 656.192 kb on - strandat 656.195 kb on + strandat 656.207 kb on - strandat 656.218 kb on + strandat 656.218 kb on + strandat 656.225 kb on + strandat 656.226 kb on - strandat 656.226 kb on - strandat 656.226 kb on - strandat 656.226 kb on - strandat 656.226 kb on - strandat 656.226 kb on - strandat 656.259 kb on + strandat 656.259 kb on + strandat 656.262 kb on - strandat 656.264 kb on + strandat 656.267 kb on - strandat 656.272 kb on - strandat 656.272 kb on - strandat 656.279 kb on + strandat 656.281 kb on - strandat 656.294 kb on + strandat 656.294 kb on + strandat 656.302 kb on - strandat 656.302 kb on - strandat 656.309 kb on + strandat 656.317 kb on - strandat 656.317 kb on - strandat 656.317 kb on - strandat 656.317 kb on - strandat 656.317 kb on - strandat 656.317 kb on - strandat 656.325 kb on + strandat 656.326 kb on + strandat 656.327 kb on - strandat 656.333 kb on - strandat 656.334 kb on - strandat 656.336 kb on - strandat 656.361 kb on + strandat 656.369 kb on - strandat 656.386 kb on + strandat 656.387 kb on + strandat 656.394 kb on - strandat 656.394 kb on - strandat 656.395 kb on - strandat 656.428 kb on + strand, within GFF658at 656.431 kb on - strand, within GFF658at 656.455 kb on + strand, within GFF658at 656.455 kb on + strand, within GFF658at 656.463 kb on - strand, within GFF658at 656.469 kb on + strand, within GFF658at 656.518 kb on + strand, within GFF658at 656.518 kb on + strand, within GFF658at 656.526 kb on - strand, within GFF658at 656.538 kb on + strand, within GFF658at 656.540 kb on - strand, within GFF658at 656.540 kb on - strand, within GFF658at 656.540 kb on - strand, within GFF658at 656.540 kb on - strand, within GFF658at 656.543 kb on + strand, within GFF658

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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653,032 + GFF654 0.81 -1.5
653,035 - GFF654 0.81 +0.3
653,038 + GFF654 0.81 +0.1
653,048 + GFF654 0.83 -0.8
653,050 - GFF654 0.83 +0.4
653,057 - GFF654 0.84 +1.1
653,073 + GFF654 0.87 -0.4
653,073 + GFF654 0.87 -1.5
653,073 + GFF654 0.87 -1.7
653,073 + GFF654 0.87 +0.2
653,075 + GFF654 0.87 -3.1
653,075 + GFF654 0.87 +0.5
653,075 + GFF654 0.87 -1.4
653,075 + GFF654 0.87 -0.7
653,075 + GFF654 0.87 -0.5
653,081 - GFF654 0.88 -0.1
653,081 - GFF654 0.88 +0.3
653,081 - GFF654 0.88 +0.8
653,081 - GFF654 0.88 -0.4
653,081 - GFF654 0.88 +0.4
653,081 - GFF654 0.88 -1.6
653,081 - GFF654 0.88 +0.1
653,083 - GFF654 0.88 -0.2
653,083 - GFF654 0.88 +1.1
653,083 - GFF654 0.88 -1.4
653,083 - GFF654 0.88 +0.2
653,083 - GFF654 0.88 -0.1
653,083 - GFF654 0.88 -0.5
653,083 - GFF654 0.88 -0.7
653,083 - GFF654 0.88 +1.3
653,090 - GFF654 0.89 -0.5
653,148 + -0.1
653,148 + -0.3
653,156 - -0.4
653,156 - -0.7
653,156 - -1.0
653,180 + +0.5
653,180 + +0.2
653,180 + -0.6
653,180 + -0.3
653,180 + +0.2
653,180 + +0.5
653,180 + -1.0
653,180 + +1.0
653,180 + +1.2
653,180 + +1.1
653,180 + -0.9
653,180 + +0.3
653,180 + +0.1
653,180 + -1.4
653,180 + +0.2
653,186 - +0.0
653,188 - +0.9
653,188 - -0.6
653,188 - +2.0
653,188 - +0.3
653,188 - -1.0
653,208 + +0.0
653,208 + -0.9
653,208 + +1.2
653,208 + -0.3
653,216 - +1.1
653,216 - -2.7
653,216 - -0.5
653,216 - +0.3
653,216 - -0.7
653,282 - -0.3
653,294 + +0.8
653,346 + +1.6
653,353 + +1.2
653,353 + -1.2
653,367 - -1.4
653,376 + +0.3
653,384 - GFF655 0.10 -0.2
653,384 - GFF655 0.10 -0.9
653,397 + GFF655 0.13 -0.7
653,405 - GFF655 0.14 -0.8
653,405 - GFF655 0.14 +0.9
653,410 - GFF655 0.15 +0.1
653,436 - GFF655 0.21 -0.9
653,440 + GFF655 0.22 -0.1
653,440 + GFF655 0.22 +1.3
653,443 - GFF655 0.23 -0.2
653,445 + GFF655 0.23 +0.4
653,446 - GFF655 0.23 +0.3
653,453 - GFF655 0.25 -1.6
653,453 - GFF655 0.25 -0.8
653,453 - GFF655 0.25 -0.5
653,461 + GFF655 0.26 -0.5
653,466 + GFF655 0.27 +0.3
653,466 + GFF655 0.27 +0.2
653,466 + GFF655 0.27 +0.5
653,466 + GFF655 0.27 +0.4
653,466 + GFF655 0.27 -0.4
653,466 + GFF655 0.27 -0.5
653,469 - GFF655 0.28 +0.8
653,471 + GFF655 0.28 +1.1
653,471 + GFF655 0.28 -2.5
653,471 + GFF655 0.28 -0.4
653,471 + GFF655 0.28 -1.0
653,471 + GFF655 0.28 +0.2
653,474 - GFF655 0.29 -0.2
653,474 - GFF655 0.29 +0.3
653,474 - GFF655 0.29 -1.6
653,474 - GFF655 0.29 +0.6
653,474 - GFF655 0.29 -1.3
653,474 - GFF655 0.29 -2.4
653,479 - GFF655 0.30 -1.2
653,479 - GFF655 0.30 +0.9
653,479 - GFF655 0.30 +0.4
653,479 - GFF655 0.30 -0.3
653,479 - GFF655 0.30 -0.8
653,484 - GFF655 0.31 -1.7
653,496 + GFF655 0.34 -0.3
653,514 - GFF655 0.38 -3.5
653,522 - GFF655 0.39 -1.9
653,522 - GFF655 0.39 -1.3
653,548 + GFF655 0.45 -1.1
653,552 + GFF655 0.46 -1.1
653,552 + GFF655 0.46 +1.2
653,594 + GFF655 0.55 -1.6
653,604 - GFF655 0.57 -0.2
653,649 + GFF655 0.66 +1.4
653,653 + GFF655 0.67 +1.1
653,653 + GFF655 0.67 -1.7
653,657 - GFF655 0.68 +0.4
653,657 - GFF655 0.68 -0.3
653,661 - GFF655 0.69 +0.6
653,661 - GFF655 0.69 +0.5
653,661 - GFF655 0.69 +1.5
653,674 - GFF655 0.72 -0.2
653,694 + GFF655 0.76 -0.1
653,694 + GFF655 0.76 +0.2
653,694 + GFF655 0.76 +0.0
653,694 + GFF655 0.76 +0.9
653,694 + GFF655 0.76 +0.3
653,702 - GFF655 0.77 +0.9
653,702 - GFF655 0.77 -0.8
653,702 - GFF655 0.77 -0.0
653,702 - GFF655 0.77 +0.6
653,728 - GFF655 0.83 -0.8
653,728 - GFF655 0.83 -1.0
653,728 - GFF655 0.83 -0.1
653,743 - GFF655 0.86 +0.6
653,750 - GFF655 0.88 +0.1
653,751 - GFF655 0.88 +0.3
653,774 + -1.3
653,774 + +0.5
653,777 - -0.5
653,782 - -0.6
653,830 + -0.7
653,838 - -0.9
653,845 + -0.3
653,845 + +0.0
653,853 - -1.0
653,853 - -1.2
653,864 - -0.3
653,865 + +0.5
653,872 - -2.9
653,937 + -1.3
653,937 + +0.6
653,945 - -0.6
655,585 + -0.5
655,664 + +1.3
655,670 + +0.1
655,672 - +0.5
655,678 - +1.2
655,684 + -1.7
655,690 + +0.9
655,692 - -1.0
655,692 - +0.6
655,698 - -0.4
655,701 + -0.2
655,704 + -2.9
655,712 + +0.7
655,712 - +0.0
655,716 + -0.1
655,724 - -1.1
655,767 + GFF657 0.16 +0.5
655,767 + GFF657 0.16 -1.1
655,775 - GFF657 0.18 -0.8
655,775 - GFF657 0.18 +0.0
655,775 - GFF657 0.18 +0.5
655,775 - GFF657 0.18 +0.1
655,775 - GFF657 0.18 +0.1
655,777 + GFF657 0.19 +1.3
655,777 + GFF657 0.19 +0.0
655,777 + GFF657 0.19 -1.2
655,785 - GFF657 0.21 -0.2
655,785 - GFF657 0.21 -1.4
655,821 + GFF657 0.31 +0.4
655,821 + GFF657 0.31 +0.3
655,821 + GFF657 0.31 -1.9
655,843 + GFF657 0.37 +0.6
655,859 + GFF657 0.41 -0.8
655,873 + GFF657 0.45 +0.2
655,873 + GFF657 0.45 +0.3
655,873 + GFF657 0.45 -0.8
655,873 + GFF657 0.45 -0.5
655,880 - GFF657 0.47 -0.3
655,881 - GFF657 0.47 +0.0
655,883 + GFF657 0.47 -0.7
655,891 - GFF657 0.49 -0.8
655,891 - GFF657 0.49 -2.4
655,891 - GFF657 0.49 -0.1
655,900 + GFF657 0.52 -0.0
655,900 + GFF657 0.52 -0.4
655,900 + GFF657 0.52 +0.3
655,900 + GFF657 0.52 -0.2
655,900 + GFF657 0.52 -1.3
655,900 + GFF657 0.52 +1.2
655,900 + GFF657 0.52 +0.9
655,900 + GFF657 0.52 -1.2
655,908 - GFF657 0.54 +1.2
655,908 - GFF657 0.54 -0.9
655,908 - GFF657 0.54 +0.4
655,910 + GFF657 0.55 -0.3
655,910 + GFF657 0.55 -0.8
655,913 - GFF657 0.55 +0.6
655,933 + GFF657 0.61 -1.1
655,933 + GFF657 0.61 +0.0
655,941 - GFF657 0.63 -0.9
655,941 - GFF657 0.63 +1.0
655,941 - GFF657 0.63 -0.4
655,941 - GFF657 0.63 -2.8
655,941 - GFF657 0.63 -1.0
655,946 - GFF657 0.64 +0.3
655,967 + GFF657 0.70 -1.5
655,967 + GFF657 0.70 +0.8
655,975 - GFF657 0.72 -0.5
655,975 - GFF657 0.72 -2.0
656,039 - GFF657 0.89 -0.6
656,041 + +0.3
656,041 + +0.6
656,044 - -0.7
656,049 - -1.7
656,107 + -0.4
656,112 + -2.2
656,120 - -0.6
656,120 - -0.6
656,120 - -1.7
656,120 - +0.4
656,120 - -0.2
656,120 - -0.8
656,130 + -1.0
656,143 + -2.1
656,143 + -2.0
656,151 - -2.0
656,151 - -0.7
656,161 - -0.1
656,167 - -0.8
656,174 + -0.2
656,174 + -0.4
656,192 - -1.2
656,195 + -0.1
656,207 - -0.1
656,218 + -2.2
656,218 + -0.7
656,225 + -0.1
656,226 - -0.5
656,226 - +0.0
656,226 - +0.2
656,226 - -0.2
656,226 - +1.8
656,226 - +0.1
656,259 + -0.5
656,259 + -1.1
656,262 - -0.7
656,264 + +1.0
656,267 - -2.8
656,272 - -1.5
656,272 - -0.5
656,279 + -1.5
656,281 - +0.3
656,294 + -1.4
656,294 + +0.6
656,302 - -0.1
656,302 - +0.3
656,309 + +0.5
656,317 - -1.6
656,317 - -1.4
656,317 - +0.7
656,317 - +0.6
656,317 - +0.2
656,317 - +0.5
656,325 + -2.1
656,326 + +0.1
656,327 - -0.4
656,333 - -1.0
656,334 - +0.3
656,336 - +0.3
656,361 + +0.1
656,369 - -2.6
656,386 + -1.6
656,387 + +0.0
656,394 - -0.2
656,394 - -3.0
656,395 - -0.9
656,428 + GFF658 0.11 -0.5
656,431 - GFF658 0.11 -0.1
656,455 + GFF658 0.12 -0.4
656,455 + GFF658 0.12 -0.9
656,463 - GFF658 0.12 +0.2
656,469 + GFF658 0.12 -0.2
656,518 + GFF658 0.14 -1.0
656,518 + GFF658 0.14 -0.8
656,526 - GFF658 0.14 -1.4
656,538 + GFF658 0.15 +0.6
656,540 - GFF658 0.15 +0.5
656,540 - GFF658 0.15 +1.1
656,540 - GFF658 0.15 -0.6
656,540 - GFF658 0.15 -0.3
656,543 + GFF658 0.15 -0.7

Or see this region's nucleotide sequence