Strain Fitness in Sphingobium sp. HT1-2 around GFF628

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF626 and GFF627 are separated by 7 nucleotidesGFF627 and GFF628 are separated by 179 nucleotidesGFF628 and GFF629 are separated by 24 nucleotidesGFF629 and GFF630 are separated by 113 nucleotides GFF626 - Efflux ABC transporter, permease/ATP-binding protein, at 624,469 to 626,193 GFF626 GFF627 - hypothetical protein, at 626,201 to 626,524 GFF627 GFF628 - Biopolymer transport protein ExbD/TolR, at 626,704 to 627,126 GFF628 GFF629 - Biopolymer transport protein ExbD/TolR, at 627,151 to 627,639 GFF629 GFF630 - MotA/TolQ/ExbB proton channel family protein, at 627,753 to 628,508 GFF630 Position (kb) 626 627 628Strain fitness (log2 ratio) -2 -1 0 1 2at 625.707 kb on - strand, within GFF626at 625.710 kb on - strand, within GFF626at 625.710 kb on - strand, within GFF626at 625.710 kb on - strand, within GFF626at 625.710 kb on - strand, within GFF626at 625.719 kb on - strand, within GFF626at 625.779 kb on + strand, within GFF626at 625.779 kb on + strand, within GFF626at 625.787 kb on - strand, within GFF626at 625.787 kb on - strand, within GFF626at 625.787 kb on - strand, within GFF626at 625.787 kb on - strand, within GFF626at 625.792 kb on - strand, within GFF626at 625.807 kb on + strand, within GFF626at 625.813 kb on + strand, within GFF626at 625.815 kb on - strand, within GFF626at 625.830 kb on + strand, within GFF626at 625.838 kb on - strand, within GFF626at 625.838 kb on - strand, within GFF626at 625.845 kb on - strand, within GFF626at 625.845 kb on - strand, within GFF626at 625.855 kb on + strand, within GFF626at 625.855 kb on + strand, within GFF626at 625.865 kb on + strand, within GFF626at 625.865 kb on + strand, within GFF626at 625.865 kb on + strand, within GFF626at 625.872 kb on + strand, within GFF626at 625.872 kb on + strand, within GFF626at 625.872 kb on + strand, within GFF626at 625.873 kb on - strand, within GFF626at 625.873 kb on - strand, within GFF626at 625.880 kb on - strand, within GFF626at 625.915 kb on + strand, within GFF626at 625.915 kb on + strand, within GFF626at 625.917 kb on + strand, within GFF626at 625.923 kb on - strand, within GFF626at 625.925 kb on - strand, within GFF626at 625.925 kb on - strand, within GFF626at 625.928 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.986 kb on + strand, within GFF626at 625.994 kb on - strand, within GFF626at 625.994 kb on - strand, within GFF626at 625.994 kb on - strand, within GFF626at 626.004 kb on - strand, within GFF626at 626.011 kb on + strand, within GFF626at 626.054 kb on - strandat 626.054 kb on - strandat 626.068 kb on + strandat 626.124 kb on + strandat 626.152 kb on + strandat 626.160 kb on - strandat 626.162 kb on - strandat 626.179 kb on + strandat 626.217 kb on - strandat 626.217 kb on - strandat 626.222 kb on - strandat 626.251 kb on - strand, within GFF627at 626.252 kb on - strand, within GFF627at 626.268 kb on + strand, within GFF627at 626.276 kb on - strand, within GFF627at 626.322 kb on + strand, within GFF627at 626.325 kb on - strand, within GFF627at 626.325 kb on - strand, within GFF627at 626.325 kb on - strand, within GFF627at 626.327 kb on + strand, within GFF627at 626.332 kb on + strand, within GFF627at 626.337 kb on + strand, within GFF627at 626.340 kb on - strand, within GFF627at 626.357 kb on + strand, within GFF627at 626.373 kb on - strand, within GFF627at 626.373 kb on - strand, within GFF627at 626.380 kb on + strand, within GFF627at 626.380 kb on + strand, within GFF627at 626.426 kb on + strand, within GFF627at 626.426 kb on + strand, within GFF627at 626.431 kb on + strand, within GFF627at 626.434 kb on - strand, within GFF627at 626.446 kb on + strand, within GFF627at 626.446 kb on + strand, within GFF627at 626.446 kb on + strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.454 kb on - strand, within GFF627at 626.456 kb on + strand, within GFF627at 626.456 kb on + strand, within GFF627at 626.456 kb on + strand, within GFF627at 626.463 kb on + strand, within GFF627at 626.464 kb on - strand, within GFF627at 626.464 kb on - strand, within GFF627at 626.466 kb on - strand, within GFF627at 626.509 kb on + strandat 626.517 kb on - strandat 626.517 kb on - strandat 626.526 kb on + strandat 626.533 kb on - strandat 626.534 kb on - strandat 626.534 kb on - strandat 626.541 kb on + strandat 626.551 kb on + strandat 626.559 kb on - strandat 626.565 kb on + strandat 626.565 kb on + strandat 626.569 kb on + strandat 626.623 kb on + strandat 626.623 kb on + strandat 626.636 kb on - strandat 626.671 kb on + strandat 626.679 kb on - strandat 626.679 kb on - strandat 626.686 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.711 kb on + strandat 626.713 kb on + strandat 626.719 kb on - strandat 626.719 kb on - strandat 626.719 kb on - strandat 626.719 kb on - strandat 626.719 kb on - strandat 627.138 kb on - strandat 627.647 kb on + strandat 627.647 kb on + strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.661 kb on - strandat 627.683 kb on + strandat 627.695 kb on + strandat 627.699 kb on - strandat 627.699 kb on - strandat 627.700 kb on + strandat 627.703 kb on - strandat 627.708 kb on - strandat 627.717 kb on - strandat 627.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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625,707 - GFF626 0.72 -0.0
625,710 - GFF626 0.72 -1.9
625,710 - GFF626 0.72 +0.9
625,710 - GFF626 0.72 -1.6
625,710 - GFF626 0.72 -0.1
625,719 - GFF626 0.72 -0.2
625,779 + GFF626 0.76 -0.6
625,779 + GFF626 0.76 +0.2
625,787 - GFF626 0.76 -1.1
625,787 - GFF626 0.76 -1.2
625,787 - GFF626 0.76 -1.6
625,787 - GFF626 0.76 -2.2
625,792 - GFF626 0.77 -1.0
625,807 + GFF626 0.78 -1.1
625,813 + GFF626 0.78 -0.1
625,815 - GFF626 0.78 -0.3
625,830 + GFF626 0.79 -0.6
625,838 - GFF626 0.79 +0.4
625,838 - GFF626 0.79 -0.6
625,845 - GFF626 0.80 -0.3
625,845 - GFF626 0.80 +1.1
625,855 + GFF626 0.80 -2.0
625,855 + GFF626 0.80 -1.1
625,865 + GFF626 0.81 +0.9
625,865 + GFF626 0.81 -0.4
625,865 + GFF626 0.81 -0.5
625,872 + GFF626 0.81 +0.5
625,872 + GFF626 0.81 -0.5
625,872 + GFF626 0.81 +0.5
625,873 - GFF626 0.81 -2.3
625,873 - GFF626 0.81 -1.6
625,880 - GFF626 0.82 -0.0
625,915 + GFF626 0.84 -0.6
625,915 + GFF626 0.84 -0.6
625,917 + GFF626 0.84 +1.1
625,923 - GFF626 0.84 -0.1
625,925 - GFF626 0.84 -1.6
625,925 - GFF626 0.84 -0.2
625,928 + GFF626 0.85 -0.6
625,986 + GFF626 0.88 +0.4
625,986 + GFF626 0.88 -0.8
625,986 + GFF626 0.88 +0.0
625,986 + GFF626 0.88 -0.1
625,986 + GFF626 0.88 -0.2
625,986 + GFF626 0.88 -1.6
625,994 - GFF626 0.88 -1.9
625,994 - GFF626 0.88 -0.3
625,994 - GFF626 0.88 +0.2
626,004 - GFF626 0.89 -1.1
626,011 + GFF626 0.89 +0.5
626,054 - +0.8
626,054 - -0.5
626,068 + -1.6
626,124 + -0.4
626,152 + -0.5
626,160 - +0.2
626,162 - -0.7
626,179 + -0.9
626,217 - +1.1
626,217 - -2.3
626,222 - -0.1
626,251 - GFF627 0.15 -1.9
626,252 - GFF627 0.16 -1.2
626,268 + GFF627 0.21 -1.0
626,276 - GFF627 0.23 +0.4
626,322 + GFF627 0.37 -0.6
626,325 - GFF627 0.38 -1.1
626,325 - GFF627 0.38 +1.0
626,325 - GFF627 0.38 +0.6
626,327 + GFF627 0.39 -1.6
626,332 + GFF627 0.40 -0.8
626,337 + GFF627 0.42 +0.4
626,340 - GFF627 0.43 -0.5
626,357 + GFF627 0.48 -0.9
626,373 - GFF627 0.53 -1.5
626,373 - GFF627 0.53 -0.1
626,380 + GFF627 0.55 +1.3
626,380 + GFF627 0.55 +0.0
626,426 + GFF627 0.69 -0.6
626,426 + GFF627 0.69 +0.9
626,431 + GFF627 0.71 +0.1
626,434 - GFF627 0.72 +0.4
626,446 + GFF627 0.76 -1.2
626,446 + GFF627 0.76 -0.7
626,446 + GFF627 0.76 -1.8
626,454 - GFF627 0.78 -0.7
626,454 - GFF627 0.78 +0.2
626,454 - GFF627 0.78 +1.1
626,454 - GFF627 0.78 +0.1
626,454 - GFF627 0.78 -0.6
626,456 + GFF627 0.79 -1.6
626,456 + GFF627 0.79 -1.1
626,456 + GFF627 0.79 -1.3
626,463 + GFF627 0.81 -0.6
626,464 - GFF627 0.81 -0.1
626,464 - GFF627 0.81 +0.8
626,466 - GFF627 0.82 -1.9
626,509 + +0.2
626,517 - +0.4
626,517 - -0.2
626,526 + -1.6
626,533 - -0.7
626,534 - -1.2
626,534 - +0.8
626,541 + -0.4
626,551 + +1.2
626,559 - -0.3
626,565 + -0.5
626,565 + -0.0
626,569 + +0.3
626,623 + -0.2
626,623 + -2.0
626,636 - -0.9
626,671 + -0.5
626,679 - +0.1
626,679 - -0.3
626,686 + -0.5
626,711 + +1.1
626,711 + -0.5
626,711 + +0.1
626,711 + +0.8
626,711 + -0.7
626,711 + +0.2
626,711 + -0.0
626,711 + -0.6
626,713 + -0.1
626,719 - -2.1
626,719 - +1.6
626,719 - -0.1
626,719 - -1.9
626,719 - +0.0
627,138 - -0.5
627,647 + -1.6
627,647 + +0.0
627,655 - -1.5
627,655 - -0.1
627,655 - +1.1
627,655 - -1.6
627,655 - -0.1
627,655 - -1.4
627,661 - +0.0
627,683 + -1.1
627,695 + +0.5
627,699 - +0.4
627,699 - -0.4
627,700 + +0.3
627,703 - +0.1
627,708 - +2.6
627,717 - +0.5
627,804 - -1.1

Or see this region's nucleotide sequence