Strain Fitness in Sphingobium sp. HT1-2 around GFF602

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF598 and GFF599 are separated by 170 nucleotidesGFF599 and GFF600 are separated by 32 nucleotidesGFF600 and GFF601 overlap by 4 nucleotidesGFF601 and GFF602 are separated by 35 nucleotidesGFF602 and GFF603 are separated by 41 nucleotidesGFF603 and GFF604 are separated by 4 nucleotides GFF598 - Protein-disulfide isomerase, at 602,260 to 602,970 GFF598 GFF599 - LSU ribosomal protein L34p, at 603,141 to 603,275 GFF599 GFF600 - Ribonuclease P protein component (EC 3.1.26.5), at 603,308 to 603,709 GFF600 GFF601 - Membrane protein insertion efficiency factor YidD, at 603,706 to 603,918 GFF601 GFF602 - Inner membrane protein translocase and chaperone YidC, long form, at 603,954 to 605,660 GFF602 GFF603 - GTP-binding protein EngB, at 605,702 to 606,349 GFF603 GFF604 - Protein PhnA, at 606,354 to 606,656 GFF604 Position (kb) 603 604 605 606Strain fitness (log2 ratio) -2 -1 0 1 2at 602.972 kb on + strandat 602.980 kb on - strandat 602.980 kb on - strandat 603.002 kb on + strandat 603.002 kb on + strandat 603.036 kb on - strandat 603.036 kb on - strandat 603.277 kb on - strandat 603.615 kb on - strand, within GFF600at 603.617 kb on - strand, within GFF600at 603.624 kb on + strand, within GFF600at 603.632 kb on + strand, within GFF600at 603.632 kb on + strand, within GFF600at 603.632 kb on + strand, within GFF600at 603.632 kb on + strand, within GFF600at 603.637 kb on + strand, within GFF600at 603.640 kb on - strand, within GFF600at 603.664 kb on + strand, within GFF600at 603.691 kb on - strandat 603.723 kb on + strandat 603.740 kb on + strand, within GFF601at 603.740 kb on + strand, within GFF601at 603.748 kb on - strand, within GFF601at 603.748 kb on - strand, within GFF601at 603.754 kb on - strand, within GFF601at 603.775 kb on + strand, within GFF601at 603.777 kb on - strand, within GFF601at 603.782 kb on + strand, within GFF601at 603.787 kb on + strand, within GFF601at 603.787 kb on + strand, within GFF601at 603.787 kb on + strand, within GFF601at 603.787 kb on + strand, within GFF601at 603.787 kb on + strand, within GFF601at 603.792 kb on + strand, within GFF601at 603.795 kb on - strand, within GFF601at 603.795 kb on - strand, within GFF601at 603.795 kb on - strand, within GFF601at 603.795 kb on - strand, within GFF601at 603.795 kb on - strand, within GFF601at 603.805 kb on - strand, within GFF601at 603.837 kb on + strand, within GFF601at 603.837 kb on + strand, within GFF601at 603.882 kb on + strand, within GFF601at 603.882 kb on + strand, within GFF601at 603.898 kb on + strandat 603.914 kb on + strandat 605.621 kb on + strandat 605.626 kb on + strandat 605.629 kb on - strandat 605.633 kb on + strandat 606.333 kb on - strandat 606.333 kb on - strandat 606.333 kb on - strandat 606.333 kb on - strandat 606.339 kb on + strandat 606.340 kb on - strandat 606.340 kb on - strandat 606.343 kb on + strandat 606.343 kb on + strandat 606.343 kb on + strandat 606.344 kb on + strandat 606.351 kb on - strandat 606.351 kb on - strandat 606.351 kb on - strandat 606.358 kb on - strandat 606.366 kb on + strandat 606.366 kb on + strandat 606.366 kb on + strandat 606.378 kb on - strandat 606.398 kb on + strand, within GFF604at 606.406 kb on - strand, within GFF604at 606.438 kb on - strand, within GFF604at 606.441 kb on + strand, within GFF604at 606.442 kb on + strand, within GFF604at 606.442 kb on + strand, within GFF604at 606.450 kb on - strand, within GFF604at 606.484 kb on - strand, within GFF604at 606.497 kb on - strand, within GFF604at 606.499 kb on - strand, within GFF604at 606.500 kb on + strand, within GFF604at 606.500 kb on + strand, within GFF604at 606.515 kb on + strand, within GFF604at 606.537 kb on - strand, within GFF604at 606.545 kb on + strand, within GFF604at 606.552 kb on + strand, within GFF604at 606.562 kb on - strand, within GFF604at 606.562 kb on - strand, within GFF604at 606.562 kb on - strand, within GFF604at 606.562 kb on - strand, within GFF604at 606.596 kb on - strand, within GFF604at 606.618 kb on + strand, within GFF604at 606.619 kb on + strand, within GFF604at 606.627 kb on - strandat 606.644 kb on - strandat 606.652 kb on + strandat 606.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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602,972 + +0.7
602,980 - -0.1
602,980 - +0.2
603,002 + +0.2
603,002 + +0.8
603,036 - -0.9
603,036 - +0.1
603,277 - +0.8
603,615 - GFF600 0.76 -0.1
603,617 - GFF600 0.77 +0.3
603,624 + GFF600 0.79 +2.0
603,632 + GFF600 0.81 -0.3
603,632 + GFF600 0.81 -1.1
603,632 + GFF600 0.81 -0.6
603,632 + GFF600 0.81 -1.0
603,637 + GFF600 0.82 -0.7
603,640 - GFF600 0.83 +0.1
603,664 + GFF600 0.89 -0.7
603,691 - -1.2
603,723 + -0.3
603,740 + GFF601 0.16 -0.9
603,740 + GFF601 0.16 -0.8
603,748 - GFF601 0.20 -1.0
603,748 - GFF601 0.20 -1.9
603,754 - GFF601 0.23 +0.4
603,775 + GFF601 0.32 -1.2
603,777 - GFF601 0.33 -1.2
603,782 + GFF601 0.36 +0.5
603,787 + GFF601 0.38 -2.3
603,787 + GFF601 0.38 +0.8
603,787 + GFF601 0.38 +1.0
603,787 + GFF601 0.38 -0.5
603,787 + GFF601 0.38 +0.5
603,792 + GFF601 0.40 +0.3
603,795 - GFF601 0.42 +0.3
603,795 - GFF601 0.42 -1.4
603,795 - GFF601 0.42 -2.0
603,795 - GFF601 0.42 +1.3
603,795 - GFF601 0.42 -0.2
603,805 - GFF601 0.46 +0.9
603,837 + GFF601 0.62 +0.3
603,837 + GFF601 0.62 -1.1
603,882 + GFF601 0.83 -2.0
603,882 + GFF601 0.83 -2.6
603,898 + +0.9
603,914 + +0.7
605,621 + -0.9
605,626 + +0.2
605,629 - -1.6
605,633 + -0.4
606,333 - -1.7
606,333 - -0.8
606,333 - +0.4
606,333 - -0.3
606,339 + -0.7
606,340 - -1.8
606,340 - +0.9
606,343 + -2.0
606,343 + -1.7
606,343 + -1.4
606,344 + -0.4
606,351 - +1.7
606,351 - +0.3
606,351 - -0.2
606,358 - -1.2
606,366 + +1.2
606,366 + -1.2
606,366 + -1.4
606,378 - -1.4
606,398 + GFF604 0.15 -0.1
606,406 - GFF604 0.17 -0.6
606,438 - GFF604 0.28 +1.1
606,441 + GFF604 0.29 -2.0
606,442 + GFF604 0.29 +0.7
606,442 + GFF604 0.29 -0.6
606,450 - GFF604 0.32 +0.8
606,484 - GFF604 0.43 -1.4
606,497 - GFF604 0.47 -0.2
606,499 - GFF604 0.48 -0.5
606,500 + GFF604 0.48 +1.6
606,500 + GFF604 0.48 +0.7
606,515 + GFF604 0.53 -1.6
606,537 - GFF604 0.60 -0.3
606,545 + GFF604 0.63 -0.2
606,552 + GFF604 0.65 -0.1
606,562 - GFF604 0.69 -2.4
606,562 - GFF604 0.69 -0.7
606,562 - GFF604 0.69 +0.9
606,562 - GFF604 0.69 +0.9
606,596 - GFF604 0.80 +1.8
606,618 + GFF604 0.87 +0.1
606,619 + GFF604 0.87 +1.0
606,627 - -0.1
606,644 - +1.0
606,652 + -0.1
606,658 - +0.1

Or see this region's nucleotide sequence