Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF597 and GFF598 are separated by 53 nucleotides GFF598 and GFF599 are separated by 170 nucleotides GFF599 and GFF600 are separated by 32 nucleotides GFF600 and GFF601 overlap by 4 nucleotides GFF601 and GFF602 are separated by 35 nucleotides
GFF597 - Bll4295 protein, at 600,860 to 602,206
GFF597
GFF598 - Protein-disulfide isomerase, at 602,260 to 602,970
GFF598
GFF599 - LSU ribosomal protein L34p, at 603,141 to 603,275
GFF599
GFF600 - Ribonuclease P protein component (EC 3.1.26.5), at 603,308 to 603,709
GFF600
GFF601 - Membrane protein insertion efficiency factor YidD, at 603,706 to 603,918
GFF601
GFF602 - Inner membrane protein translocase and chaperone YidC, long form, at 603,954 to 605,660
GFF602
Position (kb) 602
603 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 601.271 kb on - strand, within GFF597 at 601.271 kb on - strand, within GFF597 at 601.284 kb on + strand, within GFF597 at 601.297 kb on - strand, within GFF597 at 601.320 kb on - strand, within GFF597 at 601.383 kb on + strand, within GFF597 at 601.383 kb on + strand, within GFF597 at 601.383 kb on + strand, within GFF597 at 601.383 kb on + strand, within GFF597 at 601.397 kb on + strand, within GFF597 at 601.410 kb on - strand, within GFF597 at 601.415 kb on - strand, within GFF597 at 601.462 kb on + strand, within GFF597 at 601.470 kb on - strand, within GFF597 at 601.497 kb on - strand, within GFF597 at 601.504 kb on + strand, within GFF597 at 601.504 kb on + strand, within GFF597 at 601.521 kb on + strand, within GFF597 at 601.522 kb on + strand, within GFF597 at 601.522 kb on + strand, within GFF597 at 601.524 kb on - strand, within GFF597 at 601.525 kb on + strand, within GFF597 at 601.525 kb on + strand, within GFF597 at 601.530 kb on - strand, within GFF597 at 601.530 kb on - strand, within GFF597 at 601.553 kb on - strand, within GFF597 at 601.555 kb on + strand, within GFF597 at 601.555 kb on + strand, within GFF597 at 601.588 kb on + strand, within GFF597 at 601.588 kb on + strand, within GFF597 at 601.588 kb on + strand, within GFF597 at 601.588 kb on + strand, within GFF597 at 601.596 kb on - strand, within GFF597 at 601.596 kb on - strand, within GFF597 at 601.596 kb on - strand, within GFF597 at 601.596 kb on - strand, within GFF597 at 601.603 kb on + strand, within GFF597 at 601.634 kb on + strand, within GFF597 at 601.642 kb on - strand, within GFF597 at 601.644 kb on - strand, within GFF597 at 601.744 kb on + strand, within GFF597 at 601.750 kb on - strand, within GFF597 at 601.759 kb on + strand, within GFF597 at 601.787 kb on + strand, within GFF597 at 601.845 kb on - strand, within GFF597 at 601.887 kb on + strand, within GFF597 at 601.887 kb on + strand, within GFF597 at 601.895 kb on - strand, within GFF597 at 601.895 kb on - strand, within GFF597 at 601.897 kb on + strand, within GFF597 at 601.900 kb on - strand, within GFF597 at 601.905 kb on - strand, within GFF597 at 601.994 kb on - strand, within GFF597 at 602.036 kb on + strand, within GFF597 at 602.041 kb on + strand, within GFF597 at 602.041 kb on + strand, within GFF597 at 602.041 kb on + strand, within GFF597 at 602.041 kb on + strand, within GFF597 at 602.041 kb on + strand, within GFF597 at 602.041 kb on + strand, within GFF597 at 602.041 kb on + strand, within GFF597 at 602.044 kb on - strand, within GFF597 at 602.044 kb on - strand, within GFF597 at 602.044 kb on - strand, within GFF597 at 602.049 kb on - strand, within GFF597 at 602.049 kb on - strand, within GFF597 at 602.049 kb on - strand, within GFF597 at 602.049 kb on - strand, within GFF597 at 602.049 kb on - strand, within GFF597 at 602.049 kb on - strand, within GFF597 at 602.049 kb on - strand, within GFF597 at 602.079 kb on + strand at 602.079 kb on + strand at 602.084 kb on + strand at 602.084 kb on + strand at 602.087 kb on - strand at 602.089 kb on + strand at 602.094 kb on + strand at 602.152 kb on + strand at 602.164 kb on + strand at 602.165 kb on - strand at 602.199 kb on + strand at 602.209 kb on + strand at 602.217 kb on - strand at 602.217 kb on - strand at 602.217 kb on - strand at 602.236 kb on + strand at 602.244 kb on - strand at 602.262 kb on - strand at 602.368 kb on + strand, within GFF598 at 602.373 kb on + strand, within GFF598 at 602.373 kb on + strand, within GFF598 at 602.381 kb on + strand, within GFF598 at 602.429 kb on - strand, within GFF598 at 602.510 kb on + strand, within GFF598 at 602.569 kb on + strand, within GFF598 at 602.589 kb on + strand, within GFF598 at 602.607 kb on + strand, within GFF598 at 602.607 kb on + strand, within GFF598 at 602.607 kb on + strand, within GFF598 at 602.615 kb on - strand, within GFF598 at 602.616 kb on + strand, within GFF598 at 602.629 kb on + strand, within GFF598 at 602.637 kb on - strand, within GFF598 at 602.659 kb on - strand, within GFF598 at 602.697 kb on + strand, within GFF598 at 602.749 kb on - strand, within GFF598 at 602.762 kb on + strand, within GFF598 at 602.781 kb on + strand, within GFF598 at 602.838 kb on + strand, within GFF598 at 602.846 kb on - strand, within GFF598 at 602.893 kb on - strand, within GFF598 at 602.905 kb on + strand at 602.913 kb on - strand at 602.980 kb on - strand at 603.002 kb on + strand at 603.002 kb on + strand at 603.036 kb on - strand at 603.632 kb on + strand, within GFF600 at 603.632 kb on + strand, within GFF600 at 603.632 kb on + strand, within GFF600 at 603.691 kb on - strand at 603.723 kb on + strand at 603.740 kb on + strand, within GFF601 at 603.740 kb on + strand, within GFF601 at 603.748 kb on - strand, within GFF601 at 603.748 kb on - strand, within GFF601 at 603.768 kb on + strand, within GFF601 at 603.777 kb on - strand, within GFF601 at 603.777 kb on - strand, within GFF601 at 603.787 kb on + strand, within GFF601 at 603.787 kb on + strand, within GFF601 at 603.787 kb on + strand, within GFF601 at 603.792 kb on + strand, within GFF601 at 603.795 kb on - strand, within GFF601 at 603.795 kb on - strand, within GFF601 at 603.795 kb on - strand, within GFF601 at 603.795 kb on - strand, within GFF601 at 603.856 kb on + strand, within GFF601 at 603.882 kb on + strand, within GFF601 at 603.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 601,271 - GFF597 0.31 +0.0 601,271 - GFF597 0.31 -0.0 601,284 + GFF597 0.31 +0.1 601,297 - GFF597 0.32 -0.3 601,320 - GFF597 0.34 -0.6 601,383 + GFF597 0.39 +0.7 601,383 + GFF597 0.39 -0.4 601,383 + GFF597 0.39 -0.3 601,383 + GFF597 0.39 -1.5 601,397 + GFF597 0.40 +0.2 601,410 - GFF597 0.41 -1.5 601,415 - GFF597 0.41 +1.1 601,462 + GFF597 0.45 +2.0 601,470 - GFF597 0.45 +0.3 601,497 - GFF597 0.47 -1.2 601,504 + GFF597 0.48 -0.9 601,504 + GFF597 0.48 +0.8 601,521 + GFF597 0.49 -1.1 601,522 + GFF597 0.49 -0.5 601,522 + GFF597 0.49 +0.7 601,524 - GFF597 0.49 -1.1 601,525 + GFF597 0.49 -0.4 601,525 + GFF597 0.49 +0.1 601,530 - GFF597 0.50 -0.1 601,530 - GFF597 0.50 +1.3 601,553 - GFF597 0.51 +0.4 601,555 + GFF597 0.52 -0.5 601,555 + GFF597 0.52 -1.2 601,588 + GFF597 0.54 +0.9 601,588 + GFF597 0.54 -2.2 601,588 + GFF597 0.54 -0.2 601,588 + GFF597 0.54 -1.1 601,596 - GFF597 0.55 +0.1 601,596 - GFF597 0.55 -0.0 601,596 - GFF597 0.55 -0.6 601,596 - GFF597 0.55 -0.6 601,603 + GFF597 0.55 -1.2 601,634 + GFF597 0.57 +0.1 601,642 - GFF597 0.58 -0.1 601,644 - GFF597 0.58 +0.1 601,744 + GFF597 0.66 +0.5 601,750 - GFF597 0.66 -0.3 601,759 + GFF597 0.67 -1.4 601,787 + GFF597 0.69 -0.1 601,845 - GFF597 0.73 -2.6 601,887 + GFF597 0.76 -0.3 601,887 + GFF597 0.76 +0.2 601,895 - GFF597 0.77 -1.8 601,895 - GFF597 0.77 +0.5 601,897 + GFF597 0.77 +0.6 601,900 - GFF597 0.77 -0.7 601,905 - GFF597 0.78 -2.7 601,994 - GFF597 0.84 -0.6 602,036 + GFF597 0.87 -1.7 602,041 + GFF597 0.88 +1.1 602,041 + GFF597 0.88 -1.0 602,041 + GFF597 0.88 +0.8 602,041 + GFF597 0.88 -0.2 602,041 + GFF597 0.88 -0.1 602,041 + GFF597 0.88 -1.7 602,041 + GFF597 0.88 -0.5 602,044 - GFF597 0.88 +0.5 602,044 - GFF597 0.88 -1.3 602,044 - GFF597 0.88 -0.9 602,049 - GFF597 0.88 -1.3 602,049 - GFF597 0.88 +1.5 602,049 - GFF597 0.88 +0.7 602,049 - GFF597 0.88 -1.0 602,049 - GFF597 0.88 -0.4 602,049 - GFF597 0.88 -0.8 602,049 - GFF597 0.88 +0.0 602,079 + +0.8 602,079 + +0.3 602,084 + -1.0 602,084 + -1.7 602,087 - -0.5 602,089 + +1.1 602,094 + -0.5 602,152 + -0.8 602,164 + +0.1 602,165 - -0.3 602,199 + +0.2 602,209 + +0.2 602,217 - +1.7 602,217 - +1.1 602,217 - -0.9 602,236 + -0.5 602,244 - -0.1 602,262 - +0.2 602,368 + GFF598 0.15 -0.0 602,373 + GFF598 0.16 +1.7 602,373 + GFF598 0.16 +2.4 602,381 + GFF598 0.17 -0.4 602,429 - GFF598 0.24 -1.1 602,510 + GFF598 0.35 +0.6 602,569 + GFF598 0.43 -1.0 602,589 + GFF598 0.46 -0.7 602,607 + GFF598 0.49 +0.0 602,607 + GFF598 0.49 +1.1 602,607 + GFF598 0.49 -1.6 602,615 - GFF598 0.50 -0.1 602,616 + GFF598 0.50 -0.8 602,629 + GFF598 0.52 -0.2 602,637 - GFF598 0.53 +1.5 602,659 - GFF598 0.56 -1.6 602,697 + GFF598 0.61 -1.2 602,749 - GFF598 0.69 +0.1 602,762 + GFF598 0.71 +0.3 602,781 + GFF598 0.73 -0.0 602,838 + GFF598 0.81 -0.8 602,846 - GFF598 0.82 +0.3 602,893 - GFF598 0.89 +0.6 602,905 + +0.8 602,913 - -0.9 602,980 - +0.1 603,002 + +0.4 603,002 + +1.0 603,036 - +0.3 603,632 + GFF600 0.81 -0.1 603,632 + GFF600 0.81 -0.9 603,632 + GFF600 0.81 -0.8 603,691 - -1.1 603,723 + -0.1 603,740 + GFF601 0.16 -0.7 603,740 + GFF601 0.16 -0.6 603,748 - GFF601 0.20 -0.8 603,748 - GFF601 0.20 -1.7 603,768 + GFF601 0.29 +1.1 603,777 - GFF601 0.33 -1.1 603,777 - GFF601 0.33 -1.0 603,787 + GFF601 0.38 -2.1 603,787 + GFF601 0.38 -0.3 603,787 + GFF601 0.38 +0.6 603,792 + GFF601 0.40 +0.5 603,795 - GFF601 0.42 -1.2 603,795 - GFF601 0.42 -0.1 603,795 - GFF601 0.42 -1.8 603,795 - GFF601 0.42 +1.5 603,856 + GFF601 0.70 +2.9 603,882 + GFF601 0.83 -2.4 603,914 + +0.9
Or see this region's nucleotide sequence