Strain Fitness in Sphingobium sp. HT1-2 around GFF58

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF57 and GFF58 are separated by 134 nucleotidesGFF58 and GFF59 overlap by 1 nucleotides GFF57 - hypothetical protein, at 46,144 to 47,070 GFF57 GFF58 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 47,205 to 48,077 GFF58 GFF59 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 48,077 to 50,281 GFF59 Position (kb) 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 46.207 kb on + strandat 46.207 kb on + strandat 46.210 kb on - strandat 46.210 kb on - strandat 46.210 kb on - strandat 46.210 kb on - strandat 46.224 kb on + strandat 46.250 kb on + strand, within GFF57at 46.250 kb on + strand, within GFF57at 46.250 kb on + strand, within GFF57at 46.250 kb on + strand, within GFF57at 46.250 kb on + strand, within GFF57at 46.250 kb on + strand, within GFF57at 46.250 kb on + strand, within GFF57at 46.250 kb on + strand, within GFF57at 46.255 kb on + strand, within GFF57at 46.255 kb on + strand, within GFF57at 46.256 kb on + strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.258 kb on - strand, within GFF57at 46.260 kb on + strand, within GFF57at 46.264 kb on - strand, within GFF57at 46.280 kb on - strand, within GFF57at 46.284 kb on - strand, within GFF57at 46.310 kb on + strand, within GFF57at 46.326 kb on + strand, within GFF57at 46.334 kb on - strand, within GFF57at 46.337 kb on + strand, within GFF57at 46.345 kb on - strand, within GFF57at 46.389 kb on + strand, within GFF57at 46.389 kb on + strand, within GFF57at 46.396 kb on + strand, within GFF57at 46.402 kb on - strand, within GFF57at 46.402 kb on - strand, within GFF57at 46.402 kb on - strand, within GFF57at 46.402 kb on - strand, within GFF57at 46.407 kb on - strand, within GFF57at 46.412 kb on - strand, within GFF57at 46.422 kb on - strand, within GFF57at 46.437 kb on + strand, within GFF57at 46.443 kb on - strand, within GFF57at 46.444 kb on - strand, within GFF57at 46.464 kb on - strand, within GFF57at 46.464 kb on - strand, within GFF57at 46.485 kb on - strand, within GFF57at 46.514 kb on - strand, within GFF57at 46.514 kb on - strand, within GFF57at 46.519 kb on - strand, within GFF57at 46.588 kb on + strand, within GFF57at 46.598 kb on + strand, within GFF57at 46.623 kb on + strand, within GFF57at 46.623 kb on + strand, within GFF57at 46.631 kb on - strand, within GFF57at 46.631 kb on - strand, within GFF57at 46.643 kb on + strand, within GFF57at 46.652 kb on - strand, within GFF57at 46.663 kb on + strand, within GFF57at 46.674 kb on - strand, within GFF57at 46.677 kb on - strand, within GFF57at 46.677 kb on - strand, within GFF57at 46.727 kb on + strand, within GFF57at 46.732 kb on + strand, within GFF57at 46.740 kb on - strand, within GFF57at 46.773 kb on - strand, within GFF57at 46.773 kb on - strand, within GFF57at 46.774 kb on + strand, within GFF57at 46.836 kb on + strand, within GFF57at 46.856 kb on - strand, within GFF57at 46.859 kb on + strand, within GFF57at 46.859 kb on + strand, within GFF57at 46.874 kb on + strand, within GFF57at 46.898 kb on + strand, within GFF57at 46.898 kb on + strand, within GFF57at 46.898 kb on + strand, within GFF57at 46.898 kb on + strand, within GFF57at 46.898 kb on + strand, within GFF57at 46.898 kb on + strand, within GFF57at 46.898 kb on + strand, within GFF57at 46.906 kb on + strand, within GFF57at 46.906 kb on - strand, within GFF57at 46.906 kb on - strand, within GFF57at 46.906 kb on - strand, within GFF57at 46.911 kb on + strand, within GFF57at 46.927 kb on + strand, within GFF57at 46.936 kb on + strand, within GFF57at 46.939 kb on + strand, within GFF57at 46.944 kb on + strand, within GFF57at 46.944 kb on + strand, within GFF57at 46.944 kb on + strand, within GFF57at 46.944 kb on + strand, within GFF57at 46.944 kb on + strand, within GFF57at 46.944 kb on + strand, within GFF57at 46.944 kb on + strand, within GFF57at 46.944 kb on + strand, within GFF57at 46.944 kb on + strand, within GFF57at 46.947 kb on - strand, within GFF57at 46.947 kb on - strand, within GFF57at 46.952 kb on - strand, within GFF57at 46.952 kb on - strand, within GFF57at 46.952 kb on - strand, within GFF57at 46.952 kb on - strand, within GFF57at 46.952 kb on - strand, within GFF57at 46.958 kb on - strand, within GFF57at 46.969 kb on + strand, within GFF57at 46.969 kb on + strand, within GFF57at 46.977 kb on - strand, within GFF57at 46.977 kb on - strand, within GFF57at 46.977 kb on - strand, within GFF57at 46.977 kb on - strand, within GFF57at 46.984 kb on + strandat 46.994 kb on + strandat 46.996 kb on - strandat 47.002 kb on - strandat 47.002 kb on - strandat 47.004 kb on + strandat 47.004 kb on + strandat 47.006 kb on - strandat 47.007 kb on - strandat 47.007 kb on - strandat 47.012 kb on + strandat 47.042 kb on - strandat 47.064 kb on + strandat 47.074 kb on - strandat 47.074 kb on - strandat 47.074 kb on - strandat 47.082 kb on - strandat 47.085 kb on + strandat 47.100 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.109 kb on + strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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46,207 + +0.3
46,207 + -1.1
46,210 - +0.8
46,210 - -0.5
46,210 - -0.7
46,210 - +0.1
46,224 + -1.5
46,250 + GFF57 0.11 +0.5
46,250 + GFF57 0.11 +1.1
46,250 + GFF57 0.11 +0.1
46,250 + GFF57 0.11 +0.5
46,250 + GFF57 0.11 -1.8
46,250 + GFF57 0.11 +0.9
46,250 + GFF57 0.11 -0.4
46,250 + GFF57 0.11 -0.1
46,255 + GFF57 0.12 -0.4
46,255 + GFF57 0.12 -0.6
46,256 + GFF57 0.12 +1.0
46,258 - GFF57 0.12 +0.2
46,258 - GFF57 0.12 -0.5
46,258 - GFF57 0.12 +0.5
46,258 - GFF57 0.12 -1.6
46,258 - GFF57 0.12 -0.3
46,258 - GFF57 0.12 -0.6
46,258 - GFF57 0.12 -0.3
46,258 - GFF57 0.12 +1.4
46,258 - GFF57 0.12 -0.8
46,258 - GFF57 0.12 +0.2
46,260 + GFF57 0.13 -1.5
46,264 - GFF57 0.13 -0.8
46,280 - GFF57 0.15 -0.5
46,284 - GFF57 0.15 -1.0
46,310 + GFF57 0.18 -0.9
46,326 + GFF57 0.20 +0.6
46,334 - GFF57 0.20 +0.2
46,337 + GFF57 0.21 -0.2
46,345 - GFF57 0.22 -2.5
46,389 + GFF57 0.26 +0.3
46,389 + GFF57 0.26 +0.5
46,396 + GFF57 0.27 -0.7
46,402 - GFF57 0.28 +1.8
46,402 - GFF57 0.28 -0.8
46,402 - GFF57 0.28 -0.7
46,402 - GFF57 0.28 -0.6
46,407 - GFF57 0.28 -0.2
46,412 - GFF57 0.29 +0.9
46,422 - GFF57 0.30 +0.1
46,437 + GFF57 0.32 +0.7
46,443 - GFF57 0.32 +0.9
46,444 - GFF57 0.32 -1.5
46,464 - GFF57 0.35 -1.4
46,464 - GFF57 0.35 -0.2
46,485 - GFF57 0.37 -1.6
46,514 - GFF57 0.40 -2.3
46,514 - GFF57 0.40 +0.3
46,519 - GFF57 0.40 -0.1
46,588 + GFF57 0.48 -0.1
46,598 + GFF57 0.49 +0.2
46,623 + GFF57 0.52 +0.5
46,623 + GFF57 0.52 -0.7
46,631 - GFF57 0.53 -0.8
46,631 - GFF57 0.53 -0.1
46,643 + GFF57 0.54 -0.9
46,652 - GFF57 0.55 +0.6
46,663 + GFF57 0.56 -0.3
46,674 - GFF57 0.57 -1.7
46,677 - GFF57 0.57 +0.2
46,677 - GFF57 0.57 -1.2
46,727 + GFF57 0.63 +1.0
46,732 + GFF57 0.63 -1.4
46,740 - GFF57 0.64 -1.4
46,773 - GFF57 0.68 +0.4
46,773 - GFF57 0.68 +0.4
46,774 + GFF57 0.68 -1.0
46,836 + GFF57 0.75 +1.1
46,856 - GFF57 0.77 +1.1
46,859 + GFF57 0.77 +0.1
46,859 + GFF57 0.77 +0.0
46,874 + GFF57 0.79 +0.6
46,898 + GFF57 0.81 -0.2
46,898 + GFF57 0.81 -1.5
46,898 + GFF57 0.81 +0.5
46,898 + GFF57 0.81 -0.9
46,898 + GFF57 0.81 -0.8
46,898 + GFF57 0.81 -0.1
46,898 + GFF57 0.81 -0.7
46,906 + GFF57 0.82 -0.5
46,906 - GFF57 0.82 +0.6
46,906 - GFF57 0.82 -0.9
46,906 - GFF57 0.82 +0.5
46,911 + GFF57 0.83 +1.2
46,927 + GFF57 0.84 -0.9
46,936 + GFF57 0.85 +0.2
46,939 + GFF57 0.86 -1.6
46,944 + GFF57 0.86 -2.1
46,944 + GFF57 0.86 +0.0
46,944 + GFF57 0.86 -0.2
46,944 + GFF57 0.86 +0.2
46,944 + GFF57 0.86 -1.5
46,944 + GFF57 0.86 -0.3
46,944 + GFF57 0.86 +0.2
46,944 + GFF57 0.86 -1.2
46,944 + GFF57 0.86 -0.7
46,947 - GFF57 0.87 -0.5
46,947 - GFF57 0.87 -0.1
46,952 - GFF57 0.87 -0.7
46,952 - GFF57 0.87 +0.1
46,952 - GFF57 0.87 -0.0
46,952 - GFF57 0.87 +0.3
46,952 - GFF57 0.87 +0.7
46,958 - GFF57 0.88 +0.2
46,969 + GFF57 0.89 -0.1
46,969 + GFF57 0.89 -0.2
46,977 - GFF57 0.90 +0.2
46,977 - GFF57 0.90 -1.1
46,977 - GFF57 0.90 -0.5
46,977 - GFF57 0.90 -1.1
46,984 + +0.2
46,994 + -0.1
46,996 - -0.6
47,002 - -2.3
47,002 - -0.9
47,004 + -0.3
47,004 + +0.4
47,006 - +0.7
47,007 - -2.7
47,007 - +0.6
47,012 + -1.8
47,042 - -0.4
47,064 + +0.5
47,074 - -2.1
47,074 - -3.0
47,074 - +0.5
47,082 - +0.5
47,085 + -2.5
47,100 + +1.4
47,109 + -0.8
47,109 + -0.6
47,109 + -2.4
47,109 + -1.1
47,109 + -1.3
47,109 + +1.7
47,109 + -0.7
47,109 + -1.4
47,109 + -0.0
47,109 + -0.2
47,109 + -1.7
47,109 + -1.7
47,109 + -1.0
47,109 + -1.3
47,109 + -1.1
47,109 + -0.1
47,109 + +0.5
47,109 + -0.1
47,109 + +0.9
47,117 - -1.6
47,117 - +0.0
47,117 - +0.9
47,117 - -0.5
47,117 - +0.6
47,117 - -1.6
47,117 - -1.0
47,117 - +0.1
47,117 - +0.3
47,117 - +0.4
47,117 - +0.6
47,117 - -2.4
47,117 - -1.8
47,117 - +0.2
47,117 - +0.9
47,117 - -1.3
47,117 - -2.1
47,117 - +0.4
47,117 - -0.2
47,117 - -1.7
47,117 - +0.3
47,117 - +0.9
47,117 - -0.5
47,117 - -2.4
47,117 - -1.3
47,117 - +0.5

Or see this region's nucleotide sequence