Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF573 and GFF574 overlap by 44 nucleotides GFF574 and GFF575 are separated by 90 nucleotides GFF575 and GFF576 are separated by 121 nucleotides GFF576 and GFF577 are separated by 174 nucleotides
GFF573 - hypothetical protein, at 570,629 to 571,000
GFF573
GFF574 - hypothetical protein, at 570,957 to 571,745
GFF574
GFF575 - oligopeptide transporter, at 571,836 to 573,800
GFF575
GFF576 - hypothetical protein, at 573,922 to 574,044
GFF576
GFF577 - TonB-dependent receptor, at 574,219 to 577,011
GFF577
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 570.836 kb on - strand, within GFF573 at 570.839 kb on - strand, within GFF573 at 570.862 kb on + strand, within GFF573 at 570.862 kb on + strand, within GFF573 at 570.870 kb on - strand, within GFF573 at 570.870 kb on - strand, within GFF573 at 570.909 kb on + strand, within GFF573 at 570.909 kb on + strand, within GFF573 at 570.912 kb on - strand, within GFF573 at 570.946 kb on + strand, within GFF573 at 570.994 kb on + strand at 570.994 kb on + strand at 570.997 kb on - strand at 570.999 kb on + strand at 570.999 kb on + strand at 571.007 kb on - strand at 571.017 kb on + strand at 571.017 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.025 kb on - strand at 571.029 kb on + strand at 571.032 kb on - strand at 571.032 kb on - strand at 571.032 kb on - strand at 571.032 kb on - strand at 571.032 kb on - strand at 571.042 kb on - strand, within GFF574 at 571.055 kb on + strand, within GFF574 at 571.055 kb on + strand, within GFF574 at 571.063 kb on - strand, within GFF574 at 571.071 kb on - strand, within GFF574 at 571.084 kb on + strand, within GFF574 at 571.092 kb on - strand, within GFF574 at 571.094 kb on + strand, within GFF574 at 571.099 kb on + strand, within GFF574 at 571.099 kb on + strand, within GFF574 at 571.100 kb on + strand, within GFF574 at 571.102 kb on - strand, within GFF574 at 571.102 kb on - strand, within GFF574 at 571.102 kb on - strand, within GFF574 at 571.117 kb on - strand, within GFF574 at 571.117 kb on - strand, within GFF574 at 571.117 kb on - strand, within GFF574 at 571.117 kb on - strand, within GFF574 at 571.125 kb on + strand, within GFF574 at 571.125 kb on + strand, within GFF574 at 571.127 kb on - strand, within GFF574 at 571.182 kb on + strand, within GFF574 at 571.202 kb on + strand, within GFF574 at 571.202 kb on + strand, within GFF574 at 571.213 kb on + strand, within GFF574 at 571.221 kb on - strand, within GFF574 at 571.221 kb on - strand, within GFF574 at 571.221 kb on - strand, within GFF574 at 571.235 kb on + strand, within GFF574 at 571.235 kb on + strand, within GFF574 at 571.235 kb on + strand, within GFF574 at 571.236 kb on + strand, within GFF574 at 571.243 kb on - strand, within GFF574 at 571.246 kb on + strand, within GFF574 at 571.266 kb on - strand, within GFF574 at 571.266 kb on - strand, within GFF574 at 571.294 kb on + strand, within GFF574 at 571.294 kb on + strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.310 kb on - strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.346 kb on + strand, within GFF574 at 571.360 kb on + strand, within GFF574 at 571.393 kb on + strand, within GFF574 at 571.397 kb on + strand, within GFF574 at 571.397 kb on + strand, within GFF574 at 571.400 kb on - strand, within GFF574 at 571.400 kb on - strand, within GFF574 at 571.405 kb on - strand, within GFF574 at 571.405 kb on - strand, within GFF574 at 571.416 kb on + strand, within GFF574 at 571.417 kb on + strand, within GFF574 at 571.417 kb on + strand, within GFF574 at 571.421 kb on + strand, within GFF574 at 571.430 kb on - strand, within GFF574 at 571.436 kb on + strand, within GFF574 at 571.450 kb on + strand, within GFF574 at 571.454 kb on - strand, within GFF574 at 571.458 kb on - strand, within GFF574 at 571.458 kb on - strand, within GFF574 at 571.477 kb on + strand, within GFF574 at 571.479 kb on + strand, within GFF574 at 571.483 kb on + strand, within GFF574 at 571.483 kb on + strand, within GFF574 at 571.483 kb on + strand, within GFF574 at 571.483 kb on + strand, within GFF574 at 571.487 kb on - strand, within GFF574 at 571.487 kb on - strand, within GFF574 at 571.487 kb on - strand, within GFF574 at 571.539 kb on + strand, within GFF574 at 571.550 kb on + strand, within GFF574 at 571.557 kb on + strand, within GFF574 at 571.602 kb on + strand, within GFF574 at 571.621 kb on - strand, within GFF574 at 571.623 kb on + strand, within GFF574 at 571.623 kb on + strand, within GFF574 at 571.626 kb on - strand, within GFF574 at 571.628 kb on + strand, within GFF574 at 571.628 kb on + strand, within GFF574 at 571.631 kb on - strand, within GFF574 at 571.631 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.663 kb on + strand, within GFF574 at 571.663 kb on + strand, within GFF574 at 571.671 kb on - strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.679 kb on - strand at 571.683 kb on - strand at 571.683 kb on - strand at 571.683 kb on - strand at 571.683 kb on - strand at 571.685 kb on + strand at 571.693 kb on - strand at 571.693 kb on - strand at 571.693 kb on - strand at 571.695 kb on + strand at 571.696 kb on + strand at 571.696 kb on + strand at 571.696 kb on + strand at 571.704 kb on - strand at 571.705 kb on + strand at 571.708 kb on - strand at 571.708 kb on - strand at 571.710 kb on + strand at 571.713 kb on - strand at 571.713 kb on - strand at 571.715 kb on + strand at 571.718 kb on - strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.769 kb on - strand at 571.769 kb on - strand at 571.769 kb on - strand at 571.774 kb on - strand at 571.850 kb on + strand at 571.850 kb on + strand at 572.087 kb on + strand, within GFF575 at 572.677 kb on - strand, within GFF575 at 573.064 kb on + strand, within GFF575 at 573.079 kb on + strand, within GFF575 at 573.154 kb on - strand, within GFF575 at 573.495 kb on + strand, within GFF575 at 573.764 kb on - strand at 573.786 kb on - strand at 573.815 kb on - strand at 573.826 kb on - strand at 573.828 kb on + strand at 573.831 kb on - strand at 573.879 kb on - strand at 573.898 kb on + strand at 573.900 kb on - strand at 573.906 kb on + strand at 573.906 kb on + strand at 573.914 kb on - strand at 573.922 kb on - strand at 573.924 kb on + strand at 573.938 kb on - strand, within GFF576 at 573.991 kb on + strand, within GFF576 at 574.041 kb on + strand at 574.046 kb on + strand at 574.051 kb on + strand at 574.051 kb on + strand at 574.056 kb on + strand at 574.065 kb on - strand at 574.088 kb on - strand at 574.091 kb on + strand at 574.096 kb on + strand at 574.098 kb on - strand at 574.099 kb on - strand at 574.100 kb on - strand at 574.104 kb on - strand at 574.106 kb on + strand at 574.122 kb on - strand at 574.124 kb on + strand at 574.192 kb on - strand at 574.200 kb on + strand at 574.213 kb on - strand at 574.213 kb on - strand at 574.218 kb on - strand at 574.225 kb on + strand at 574.261 kb on - strand at 574.269 kb on + strand at 574.285 kb on + strand at 574.285 kb on + strand at 574.290 kb on + strand at 574.298 kb on - strand at 574.306 kb on - strand at 574.320 kb on - strand at 574.320 kb on - strand at 574.320 kb on - strand at 574.332 kb on - strand at 574.339 kb on + strand at 574.341 kb on + strand at 574.346 kb on + strand at 574.346 kb on + strand at 574.353 kb on + strand at 574.400 kb on + strand at 574.400 kb on + strand at 574.441 kb on + strand at 574.449 kb on - strand at 574.465 kb on + strand at 574.473 kb on - strand at 574.484 kb on - strand at 574.586 kb on - strand, within GFF577 at 574.622 kb on + strand, within GFF577 at 574.623 kb on - strand, within GFF577 at 574.624 kb on + strand, within GFF577 at 574.624 kb on + strand, within GFF577 at 574.624 kb on + strand, within GFF577 at 574.632 kb on - strand, within GFF577 at 574.632 kb on - strand, within GFF577 at 574.653 kb on - strand, within GFF577 at 574.665 kb on - strand, within GFF577 at 574.702 kb on - strand, within GFF577 at 574.702 kb on - strand, within GFF577 at 574.716 kb on + strand, within GFF577 at 574.717 kb on + strand, within GFF577 at 574.717 kb on + strand, within GFF577 at 574.725 kb on - strand, within GFF577 at 574.738 kb on - strand, within GFF577 at 574.751 kb on + strand, within GFF577 at 574.759 kb on - strand, within GFF577 at 574.768 kb on + strand, within GFF577
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 570,836 - GFF573 0.56 -0.6 570,839 - GFF573 0.56 +0.8 570,862 + GFF573 0.63 +2.0 570,862 + GFF573 0.63 -0.1 570,870 - GFF573 0.65 -1.4 570,870 - GFF573 0.65 -0.7 570,909 + GFF573 0.75 +0.5 570,909 + GFF573 0.75 -1.4 570,912 - GFF573 0.76 -2.2 570,946 + GFF573 0.85 -1.5 570,994 + +0.2 570,994 + +0.0 570,997 - +0.4 570,999 + -1.1 570,999 + +0.7 571,007 - -1.7 571,017 + -0.2 571,017 + -2.0 571,024 + +0.5 571,024 + -0.5 571,024 + -1.7 571,024 + -1.3 571,024 + -0.5 571,024 + -0.8 571,024 + -0.6 571,024 + -0.9 571,025 - -1.4 571,029 + -0.0 571,032 - -0.1 571,032 - +0.1 571,032 - -0.3 571,032 - -0.0 571,032 - +1.1 571,042 - GFF574 0.11 -0.7 571,055 + GFF574 0.12 -1.9 571,055 + GFF574 0.12 -1.0 571,063 - GFF574 0.13 +1.6 571,071 - GFF574 0.14 +0.1 571,084 + GFF574 0.16 +1.5 571,092 - GFF574 0.17 -0.7 571,094 + GFF574 0.17 +0.4 571,099 + GFF574 0.18 +1.2 571,099 + GFF574 0.18 -0.5 571,100 + GFF574 0.18 -0.1 571,102 - GFF574 0.18 -0.7 571,102 - GFF574 0.18 -0.4 571,102 - GFF574 0.18 -0.9 571,117 - GFF574 0.20 +0.3 571,117 - GFF574 0.20 -0.5 571,117 - GFF574 0.20 -0.4 571,117 - GFF574 0.20 +0.9 571,125 + GFF574 0.21 +0.1 571,125 + GFF574 0.21 -0.7 571,127 - GFF574 0.22 -0.5 571,182 + GFF574 0.29 +0.0 571,202 + GFF574 0.31 +0.6 571,202 + GFF574 0.31 -0.7 571,213 + GFF574 0.32 +0.4 571,221 - GFF574 0.33 +1.0 571,221 - GFF574 0.33 +0.6 571,221 - GFF574 0.33 -0.4 571,235 + GFF574 0.35 -1.8 571,235 + GFF574 0.35 -1.2 571,235 + GFF574 0.35 +0.1 571,236 + GFF574 0.35 +0.5 571,243 - GFF574 0.36 +0.3 571,246 + GFF574 0.37 -1.1 571,266 - GFF574 0.39 -1.5 571,266 - GFF574 0.39 -0.6 571,294 + GFF574 0.43 +0.1 571,294 + GFF574 0.43 -0.4 571,302 - GFF574 0.44 -0.5 571,302 - GFF574 0.44 -1.1 571,302 - GFF574 0.44 +0.3 571,302 - GFF574 0.44 -0.1 571,302 - GFF574 0.44 -0.9 571,302 - GFF574 0.44 -1.5 571,310 - GFF574 0.45 +0.8 571,328 + GFF574 0.47 -1.8 571,328 + GFF574 0.47 -2.0 571,328 + GFF574 0.47 -0.2 571,328 + GFF574 0.47 +0.8 571,328 + GFF574 0.47 +0.9 571,328 + GFF574 0.47 +0.2 571,328 + GFF574 0.47 -1.1 571,336 - GFF574 0.48 -1.2 571,336 - GFF574 0.48 -2.0 571,336 - GFF574 0.48 -0.9 571,336 - GFF574 0.48 +0.1 571,336 - GFF574 0.48 +0.7 571,346 + GFF574 0.49 -0.5 571,360 + GFF574 0.51 +1.1 571,393 + GFF574 0.55 -1.3 571,397 + GFF574 0.56 +0.4 571,397 + GFF574 0.56 -2.6 571,400 - GFF574 0.56 -0.2 571,400 - GFF574 0.56 -0.3 571,405 - GFF574 0.57 -2.3 571,405 - GFF574 0.57 -2.9 571,416 + GFF574 0.58 +0.0 571,417 + GFF574 0.58 +1.0 571,417 + GFF574 0.58 +0.1 571,421 + GFF574 0.59 +0.5 571,430 - GFF574 0.60 -1.0 571,436 + GFF574 0.61 +0.4 571,450 + GFF574 0.62 +0.6 571,454 - GFF574 0.63 -0.1 571,458 - GFF574 0.63 -0.5 571,458 - GFF574 0.63 +0.4 571,477 + GFF574 0.66 -0.8 571,479 + GFF574 0.66 -0.6 571,483 + GFF574 0.67 -1.2 571,483 + GFF574 0.67 -1.5 571,483 + GFF574 0.67 +0.4 571,483 + GFF574 0.67 -1.6 571,487 - GFF574 0.67 -1.4 571,487 - GFF574 0.67 -1.0 571,487 - GFF574 0.67 -1.1 571,539 + GFF574 0.74 -0.6 571,550 + GFF574 0.75 -1.3 571,557 + GFF574 0.76 -0.4 571,602 + GFF574 0.82 +0.0 571,621 - GFF574 0.84 -0.5 571,623 + GFF574 0.84 -0.7 571,623 + GFF574 0.84 +0.8 571,626 - GFF574 0.85 -0.2 571,628 + GFF574 0.85 +1.1 571,628 + GFF574 0.85 -2.0 571,631 - GFF574 0.85 -0.1 571,631 - GFF574 0.85 -1.2 571,636 - GFF574 0.86 -0.9 571,636 - GFF574 0.86 -0.2 571,636 - GFF574 0.86 +0.1 571,636 - GFF574 0.86 -0.2 571,636 - GFF574 0.86 +0.6 571,636 - GFF574 0.86 +2.0 571,663 + GFF574 0.89 +0.5 571,663 + GFF574 0.89 +0.3 571,671 - -0.8 571,675 + +1.3 571,675 + +0.1 571,675 + -0.5 571,675 + +0.4 571,675 + -0.1 571,675 + +0.0 571,675 + +0.8 571,679 - +1.3 571,683 - +0.2 571,683 - -0.1 571,683 - -0.5 571,683 - -1.1 571,685 + -0.6 571,693 - -1.5 571,693 - +1.0 571,693 - -0.8 571,695 + +0.0 571,696 + -0.8 571,696 + -0.5 571,696 + -1.1 571,704 - +0.9 571,705 + -1.7 571,708 - -0.7 571,708 - +0.6 571,710 + +0.5 571,713 - +1.5 571,713 - -1.7 571,715 + -2.0 571,718 - -1.4 571,761 + +0.9 571,761 + -0.4 571,761 + -1.1 571,761 + -0.1 571,761 + +0.0 571,761 + +0.3 571,769 - -1.6 571,769 - -0.7 571,769 - -2.0 571,774 - -1.5 571,850 + +0.0 571,850 + -1.6 572,087 + GFF575 0.13 -0.1 572,677 - GFF575 0.43 -1.4 573,064 + GFF575 0.62 -1.6 573,079 + GFF575 0.63 +0.6 573,154 - GFF575 0.67 -0.1 573,495 + GFF575 0.84 -1.4 573,764 - -1.2 573,786 - -0.7 573,815 - -0.2 573,826 - -1.1 573,828 + +0.7 573,831 - -0.3 573,879 - -1.0 573,898 + -1.1 573,900 - -1.9 573,906 + -0.6 573,906 + +1.5 573,914 - -1.1 573,922 - -0.2 573,924 + +0.3 573,938 - GFF576 0.13 +0.8 573,991 + GFF576 0.56 -0.5 574,041 + +0.4 574,046 + -0.5 574,051 + +0.6 574,051 + +0.6 574,056 + -1.1 574,065 - -0.1 574,088 - +0.9 574,091 + -0.5 574,096 + +0.5 574,098 - -0.4 574,099 - +0.5 574,100 - -1.7 574,104 - +0.1 574,106 + +0.0 574,122 - -1.1 574,124 + -0.2 574,192 - -1.5 574,200 + +0.9 574,213 - +0.6 574,213 - +1.6 574,218 - -1.4 574,225 + +0.6 574,261 - -0.6 574,269 + +0.9 574,285 + +0.4 574,285 + -2.2 574,290 + -0.2 574,298 - -1.1 574,306 - +0.0 574,320 - +0.3 574,320 - +0.8 574,320 - -0.3 574,332 - +0.9 574,339 + -1.2 574,341 + +0.9 574,346 + -1.1 574,346 + -1.4 574,353 + -0.4 574,400 + -0.5 574,400 + -0.1 574,441 + +0.8 574,449 - -0.0 574,465 + +1.5 574,473 - -1.6 574,484 - -0.4 574,586 - GFF577 0.13 -1.0 574,622 + GFF577 0.14 -1.1 574,623 - GFF577 0.14 -0.7 574,624 + GFF577 0.15 +0.2 574,624 + GFF577 0.15 -0.1 574,624 + GFF577 0.15 +0.5 574,632 - GFF577 0.15 -0.9 574,632 - GFF577 0.15 +0.7 574,653 - GFF577 0.16 -1.6 574,665 - GFF577 0.16 -0.1 574,702 - GFF577 0.17 +1.3 574,702 - GFF577 0.17 -0.3 574,716 + GFF577 0.18 -1.1 574,717 + GFF577 0.18 -0.3 574,717 + GFF577 0.18 -1.4 574,725 - GFF577 0.18 -0.4 574,738 - GFF577 0.19 +0.9 574,751 + GFF577 0.19 -2.2 574,759 - GFF577 0.19 +1.1 574,768 + GFF577 0.20 +0.0
Or see this region's nucleotide sequence